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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058466 ID=TCONS_00058466|Name=TCONS_00058466|organism=Clytia hemisphaerica|type=transcript|length=1571bp
gtttagaaaaaaaaaatcgcaaattttgcgtaaaactatattttttgcta
atttttatggaaaaatcTGTTGCAACTTTATTGACATTCGTGAGCAACCA
AAGTGAAAATTTATTGAACAAGAAAGACATGGTTATTCAAACAGTAGAAC
ATCTCTCATCTTCCAACATCAACAACCGCGCTCCAAAATGCGCTCGGTGT
CGTAACCACGGCATAGTCAACAGTCTCAAAGGTCACAAACATTTCTGCCA
ATGGAAGAACTGCACATGTGCGCGTTGTCAAGTTGTCGTTGAACGTCAAC
GAATAACAGCCTCGCGAGTCGCATCTTTACGTCAACAACGTAAAATTGTC
GGTGGTACCGAATCTTCAACGAGTAACAAAACGAGGAACGAATACGCATC
TTCGGATGATGAACGATCTCCCAGAACATTGATCAACCTCAACAACGTGA
AATATCTTGGTGAATTCCAACGCCGAAGATTTGTTGATAGTGATGACGAA
AGTGAACGAAGCGCACGATCAACTGGAACACCCGCCTCAATCTCCCCTCC
CATATCTccacccttgtccgttcgttctgATGATATCGACGTCCGCTCAA
GNGGCCCCCCCGCCTCTATCTCCCCGCCCATATCTccacccttgtccgtt
cgttctgATGATATTGACGTCCGCTCAAGATCCAGAACTACAATCCGAAA
ACCAGCCAGTTTCTGCAAAGATTCTGAATGTAACGAATGCTTAAAAATCT
CCGAATTCATGTTCAAAACAAGCATGAGCAAATTACGTCAAGAATTTCCA
CGATTCCCAACACGTGAAATAGAAATTGTTTTACAACAATCTAAAGGTGA
CTTCCTATCTGCTGCTCAGTGCTTGAGGAACCGAGAATTGGCCCAACAAC
GTGTCGTCCCAATCTACCGTGGCTTCACAGTGTCACCACCATCATGCGAC
TGCACAGAATGCAAAGAAGCAATCAAAATCAATCGTAAACGACACGTGGA
ATCCCCAATTTCCCGACCCTCTCCCGGACCAATCCAATACTCACCATTGA
GCAAACGACGCCGCCAAGTCTTAGAAAACGCCCTTAGTATCTCAAAACGT
GGCGCCTCACCGCCCTCCCTCATCAAGTATTGTGCTGACTGCTCATCTAG
TGTTCCACTTGAAGATCGCTTCTGTGGGAAATGCGGCTCCAACCAAACAA
TTTCCCAAAAGAAACTTTAAATTCACCAACAACCAATTAATGAACTaata
aaaatcgacaaaaattgaaattttacgtATACCATAGGCacattttgtat
atttttaagaGAAAATTAGAGATATTTAAATTTAAGattatttgactttt
tacatatttgaatattttttgtacaGCAGTTCTgttctttgttatttttt
aatgaataatttcttttggaagaattttttttgatattaaaattattaaa
attaatTTGGCGTTATATGTCAAAATAAATGAAagtaaatcaatcaatca
aaaaatcAATCATTTATTCAATTTAATCGTCCGCTTTTTTTCGCAACGCT
CTCTTCGTCTATTAGGCCCGC Run BLAST on NCBI protein sequence of TCONS_00058466-protein >TCONS_00058466-protein ID=TCONS_00058466-protein|Name=TCONS_00058466-protein|organism=Clytia hemisphaerica|type=polypeptide|length=405bp
LEKKNRKFCVKLYFLLIFMEKSVATLLTFVSNQSENLLNKKDMVIQTVEH
LSSSNINNRAPKCARCRNHGIVNSLKGHKHFCQWKNCTCARCQVVVERQR
ITASRVASLRQQRKIVGGTESSTSNKTRNEYASSDDERSPRTLINLNNVK
YLGEFQRRRFVDSDDESERSARSTGTPASISPPISPPLSVRSDDIDVRSX
GPPASISPPISPPLSVRSDDIDVRSRSRTTIRKPASFCKDSECNECLKIS
EFMFKTSMSKLRQEFPRFPTREIEIVLQQSKGDFLSAAQCLRNRELAQQR
VVPIYRGFTVSPPSCDCTECKEAIKINRKRHVESPISRPSPGPIQYSPLS
KRRRQVLENALSISKRGASPPSLIKYCADCSSSVPLEDRFCGKCGSNQTI
SQKKL Run BLAST on NCBI transcript from alignment at scaffold_311:777052..778967+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058466 ID=TCONS_00058466|Name=TCONS_00058466|organism=Clytia hemisphaerica|type=transcript|length=1916bp|location=Sequence derived from alignment at scaffold_311:777052..778967+ (Clytia hemisphaerica)
gtttagaaaaaaaaaatcgcaaattttgcgtaaaactatattttttgcta
atttttatggaaaaatcTGTTGCAACTTTATTGACATTCGTGAGCAACCA
AAGTGAAAATTTGTAAGTATCTTGAACTTTTTCTTTGAtgtatttttgtg
attttctgaGAGTACAACCCTAAGCTGAACTTATATTCTGACATTTTGAA
CTATTGATTTTTGTGCATTCATCTTTAatgtttcttttgttattttctta
CAGATTGAACAAGAAAGACATGGTTATTCAAACAGTAGAACATCTCTCAT
CTTCCAACATCAACAACCGCGCTCCAAAATGCGCTCGGTGTCGTAACCAC
GGCATAGTCAACAGTCTCAAAGGTCACAAACATTTCTGCCAATGGAAGAA
CTGCACATGTGCGCGTTGTCAAGTTGTCGTTGAACGTCAACGAATAACAG
CCTCGCGAGTCGCATCTTTACGTCAACAACGTAAAATTGTCGGTGGTACC
GAATCTTCAACGAGTAACAAAACGAGGAACGAATACGCATCTTCGGATGA
TGAACGATCTCCCAGAACATTGATCAACCTCAACAACGTGAAATATCTTG
GTGAATTCCAACGCCGAAGATTTGTTGATAGTGGTAAGTCTTCATTAACA
TTCTCTGATTCATTATTATTGTCTTTCGAATTCTTAAAGTGAAAAAACAT
TGTATATTTAATGTACTGTAGTTTTAAAAACCTATGCAGCTTTAACCTGG
ATTTAAGAAAATTAATATTCActcatttttcatgaaaatgtgcCTTCTAA
ACATCCACTTataatttgattctttttaaatttatagATGACGAAAGTGA
ACGAAGCGCACGATCAACTGGAACACCCGCCTCAATCTCCCCTCCCATAT
CTccacccttgtccgttcgttctgATGATATCGACGTCCGCTCAAGNGGC
CCCCCCGCCTCTATCTCCCCGCCCATATCTccacccttgtccgttcgttc
tgATGATATTGACGTCCGCTCAAGATCCAGAACTACAATCCGAAAACCAG
CCAGTTTCTGCAAAGATTCTGAATGTAACGAATGCTTAAAAATCTCCGAA
TTCATGTTCAAAACAAGCATGAGCAAATTACGTCAAGAATTTCCACGATT
CCCAACACGTGAAATAGAAATTGTTTTACAACAATCTAAAGGTGACTTCC
TATCTGCTGCTCAGTGCTTGAGGAACCGAGAATTGGCCCAACAACGTGTC
GTCCCAATCTACCGTGGCTTCACAGTGTCACCACCATCATGCGACTGCAC
AGAATGCAAAGAAGCAATCAAAATCAATCGTAAACGACACGTGGAATCCC
CAATTTCCCGACCCTCTCCCGGACCAATCCAATACTCACCATTGAGCAAA
CGACGCCGCCAAGTCTTAGAAAACGCCCTTAGTATCTCAAAACGTGGCGC
CTCACCGCCCTCCCTCATCAAGTATTGTGCTGACTGCTCATCTAGTGTTC
CACTTGAAGATCGCTTCTGTGGGAAATGCGGCTCCAACCAAACAATTTCC
CAAAAGAAACTTTAAATTCACCAACAACCAATTAATGAACTaataaaaat
cgacaaaaattgaaattttacgtATACCATAGGCacattttgtatatttt
taagaGAAAATTAGAGATATTTAAATTTAAGattatttgactttttacat
atttgaatattttttgtacaGCAGTTCTgttctttgttattttttaatga
ataatttcttttggaagaattttttttgatattaaaattattaaaattaa
tTTGGCGTTATATGTCAAAATAAATGAAagtaaatcaatcaatcaaaaaa
tcAATCATTTATTCAATTTAATCGTCCGCTTTTTTTCGCAACGCTCTCTT
CGTCTATTAGGCCCGC Coding sequence (CDS) from alignment at scaffold_311:777052..778967+ >TCONS_00058466 ID=TCONS_00058466|Name=TCONS_00058466|organism=Clytia hemisphaerica|type=CDS|length=3654bp|location=Sequence derived from alignment at scaffold_311:777052..778967+ (Clytia hemisphaerica)
ttagaaaaaaaaaatcgcaaattttgcgtaaaactatattttttgctaat
ttttatggaaaaatcTGTTGCAACTTTATTGACATTCGTGAGCAACCAAA
GTGAAAATTTATTGAACAAGAAAGACATGGTTATTCAAACAGTAGAACAT
CTCTCATCTTCCAACATCAACAACCGCGCTCCAAAATGCGCTCGGTGTCG
TAACCACGGCATAGTCAACAGTCTCAAAGGTCACAAACATTTCTGCCAAT
GGAAGAACTGCACATGTGCGCGTTGTCAAGTTGTCGTTGAACGTCAACGA
ATAACAGCCTCGCGAGTCGCATCTTTACGTCAACAACGTAAAATTGTCGG
TGGTACCGAATCTTCAACGAGTAACAAAACGAGGAACGAATACGCATCTT
CGGATGATGAACGATCTCCCAGAACATTGATCAACCTCAACAACGTGAAA
TATCTTGGTGAATTCCAACGCCGAAGATTTGTTGATAGTGATGACGAAAG
TGAACGAAGCGCACGATCAACTGGAACACCCGCCTCAATCTCCCCTCCCA
TATCTccacccttgtccgttcgttctgATGATATCGACGTCCGCTCAAGN
GGCCCCCCCGCCTCTATCTCCCCGCCCATATCTccacccttgtccgttcg
ttctgATGATATTGACGTCCGCTCAAGATCCAGAACTACAATCCGAAAAC
CAGCCAGTTTCTGCAAAGATTCTGAATGTAACGAATGCTTAAAAATCTCC
GAATTCATGTTCAAAACAAGCATGAGCAAATTACGTCAAGAATTTCCACG
ATTCCCAACACGTGAAATAGAAATTGTTTTACAACAATCTAAAGGTGACT
TCCTATCTGCTGCTCAGTGCTTGAGGAACCGAGAATTGGCCCAACAACGT
GTCGTCCCAATCTACCGTGGCTTCACAGTGTCACCACCATCATGCGACTG
CACAGAATGCAAAGAAGCAATCAAAATCAATCGTAAACGACACGTGGAAT
CCCCAATTTCCCGACCCTCTCCCGGACCAATCCAATACTCACCATTGAGC
AAACGACGCCGCCAAGTCTTAGAAAACGCCCTTAGTATCTCAAAACGTGG
CGCCTCACCGCCCTCCCTCATCAAGTATTGTGCTGACTGCTCATCTAGTG
TTCCACTTGAAGATCGCTTCTGTGGGAAATGCGGCTCCAACCAAACAATT
TCCCAAAAGAAACTTTAAttagaaaaaaaaaatcgcaaattttgcgtaaa
actatattttttgctaatttttatggaaaaatcTGTTGCAACTTTATTGA
CATTCGTGAGCAACCAAAGTGAAAATTTATTGAACAAGAAAGACATGGTT
ATTCAAACAGTAGAACATCTCTCATCTTCCAACATCAACAACCGCGCTCC
AAAATGCGCTCGGTGTCGTAACCACGGCATAGTCAACAGTCTCAAAGGTC
ACAAACATTTCTGCCAATGGAAGAACTGCACATGTGCGCGTTGTCAAGTT
GTCGTTGAACGTCAACGAATAACAGCCTCGCGAGTCGCATCTTTACGTCA
ACAACGTAAAATTGTCGGTGGTACCGAATCTTCAACGAGTAACAAAACGA
GGAACGAATACGCATCTTCGGATGATGAACGATCTCCCAGAACATTGATC
AACCTCAACAACGTGAAATATCTTGGTGAATTCCAACGCCGAAGATTTGT
TGATAGTGATGACGAAAGTGAACGAAGCGCACGATCAACTGGAACACCCG
CCTCAATCTCCCCTCCCATATCTccacccttgtccgttcgttctgATGAT
ATCGACGTCCGCTCAAGNGGCCCCCCCGCCTCTATCTCCCCGCCCATATC
TccacccttgtccgttcgttctgATGATATTGACGTCCGCTCAAGATCCA
GAACTACAATCCGAAAACCAGCCAGTTTCTGCAAAGATTCTGAATGTAAC
GAATGCTTAAAAATCTCCGAATTCATGTTCAAAACAAGCATGAGCAAATT
ACGTCAAGAATTTCCACGATTCCCAACACGTGAAATAGAAATTGTTTTAC
AACAATCTAAAGGTGACTTCCTATCTGCTGCTCAGTGCTTGAGGAACCGA
GAATTGGCCCAACAACGTGTCGTCCCAATCTACCGTGGCTTCACAGTGTC
ACCACCATCATGCGACTGCACAGAATGCAAAGAAGCAATCAAAATCAATC
GTAAACGACACGTGGAATCCCCAATTTCCCGACCCTCTCCCGGACCAATC
CAATACTCACCATTGAGCAAACGACGCCGCCAAGTCTTAGAAAACGCCCT
TAGTATCTCAAAACGTGGCGCCTCACCGCCCTCCCTCATCAAGTATTGTG
CTGACTGCTCATCTAGTGTTCCACTTGAAGATCGCTTCTGTGGGAAATGC
GGCTCCAACCAAACAATTTCCCAAAAGAAACTTTAAttagaaaaaaaaaa
tcgcaaattttgcgtaaaactatattttttgctaatttttatggaaaaat
cTGTTGCAACTTTATTGACATTCGTGAGCAACCAAAGTGAAAATTTATTG
AACAAGAAAGACATGGTTATTCAAACAGTAGAACATCTCTCATCTTCCAA
CATCAACAACCGCGCTCCAAAATGCGCTCGGTGTCGTAACCACGGCATAG
TCAACAGTCTCAAAGGTCACAAACATTTCTGCCAATGGAAGAACTGCACA
TGTGCGCGTTGTCAAGTTGTCGTTGAACGTCAACGAATAACAGCCTCGCG
AGTCGCATCTTTACGTCAACAACGTAAAATTGTCGGTGGTACCGAATCTT
CAACGAGTAACAAAACGAGGAACGAATACGCATCTTCGGATGATGAACGA
TCTCCCAGAACATTGATCAACCTCAACAACGTGAAATATCTTGGTGAATT
CCAACGCCGAAGATTTGTTGATAGTGATGACGAAAGTGAACGAAGCGCAC
GATCAACTGGAACACCCGCCTCAATCTCCCCTCCCATATCTccacccttg
tccgttcgttctgATGATATCGACGTCCGCTCAAGNGGCCCCCCCGCCTC
TATCTCCCCGCCCATATCTccacccttgtccgttcgttctgATGATATTG
ACGTCCGCTCAAGATCCAGAACTACAATCCGAAAACCAGCCAGTTTCTGC
AAAGATTCTGAATGTAACGAATGCTTAAAAATCTCCGAATTCATGTTCAA
AACAAGCATGAGCAAATTACGTCAAGAATTTCCACGATTCCCAACACGTG
AAATAGAAATTGTTTTACAACAATCTAAAGGTGACTTCCTATCTGCTGCT
CAGTGCTTGAGGAACCGAGAATTGGCCCAACAACGTGTCGTCCCAATCTA
CCGTGGCTTCACAGTGTCACCACCATCATGCGACTGCACAGAATGCAAAG
AAGCAATCAAAATCAATCGTAAACGACACGTGGAATCCCCAATTTCCCGA
CCCTCTCCCGGACCAATCCAATACTCACCATTGAGCAAACGACGCCGCCA
AGTCTTAGAAAACGCCCTTAGTATCTCAAAACGTGGCGCCTCACCGCCCT
CCCTCATCAAGTATTGTGCTGACTGCTCATCTAGTGTTCCACTTGAAGAT
CGCTTCTGTGGGAAATGCGGCTCCAACCAAACAATTTCCCAAAAGAAACT
TTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058466-exon-scaffold_311-1491911889:777052..777163 | TCONS_00058466-exon-scaffold_311-1491911889:777052..777163 | Clytia hemisphaerica | exon |
| TCONS_00058466-exon-scaffold_311-1510915933:777052..777163 | TCONS_00058466-exon-scaffold_311-1510915933:777052..777163 | Clytia hemisphaerica | exon |
| TCONS_00058466-exon-scaffold_311-1575043694:777052..777163 | TCONS_00058466-exon-scaffold_311-1575043694:777052..777163 | Clytia hemisphaerica | exon |
| TCONS_00058466-exon-scaffold_311-1491911889:777305..777684 | TCONS_00058466-exon-scaffold_311-1491911889:777305..777684 | Clytia hemisphaerica | exon |
| TCONS_00058466-exon-scaffold_311-1510915933:777305..777684 | TCONS_00058466-exon-scaffold_311-1510915933:777305..777684 | Clytia hemisphaerica | exon |
| TCONS_00058466-exon-scaffold_311-1575043694:777305..777684 | TCONS_00058466-exon-scaffold_311-1575043694:777305..777684 | Clytia hemisphaerica | exon |
| TCONS_00058466-exon-scaffold_311-1491911889:777889..778967 | TCONS_00058466-exon-scaffold_311-1491911889:777889..778967 | Clytia hemisphaerica | exon |
| TCONS_00058466-exon-scaffold_311-1510915933:777889..778967 | TCONS_00058466-exon-scaffold_311-1510915933:777889..778967 | Clytia hemisphaerica | exon |
| TCONS_00058466-exon-scaffold_311-1575043694:777889..778967 | TCONS_00058466-exon-scaffold_311-1575043694:777889..778967 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:777052..778967 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001275 | DM_DNA-bd |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
Blast
BLAST of TCONS_00058466 vs. Swiss-Prot (Human)
Match: DMTA2 (Doublesex- and mab-3-related transcription factor A2 OS=Homo sapiens GN=DMRTA2 PE=2 SV=2) HSP 1 Score: 90.8929 bits (224), Expect = 3.156e-19 Identity = 34/54 (62.96%), Postives = 46/54 (85.19%), Query Frame = 3
Query: 177 RAPKCARCRNHGIVNSLKGHKHFCQWKNCTCARCQVVVERQRITASRVASLRQQ 338
R PKCARCRNHG+V++LKGHK +C+WK+C CA+C ++ ERQR+ A++VA RQQ
Sbjct: 66 RTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVMAAQVALRRQQ 119
The following BLAST results are available for this feature:
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