TCONS_00057373-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00057373-protein
Unique NameTCONS_00057373-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length520

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00057373-protein ID=TCONS_00057373-protein|Name=TCONS_00057373-protein|organism=Clytia hemisphaerica|type=polypeptide|length=520bp
MENATSLNNSAATGGAGGLGGLNNTSATVSLQHPTQQNMVMQPMQQLQMG
QAPQQQPSTSNPVMNGQPPPPQMPDDENXSNPVMNGQPPPPQMLDDENTE
MRKQEIGDILHQIMNITDQSLDEAQARKQALNCHRLKPALFTVLCEIKEK
TVLNMRSQVEDEPPDPQLMRLDNMLLAEGVAGSDKSGSTAAAAAAVHDSQ
IENVDYKMKLSQIRQIYHTELEKYEQACSEFTTHVMNLLREQSRTRPVSK
NEIERMVNVIHWKFNSIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQS
TEILNEYFYSHLSNPYPSEEAKEELARKCGISVSQVSNWFGNKRIRYKKN
IGKAQEEANMYAAKAQQNQHQSTAGGGAGEGGSSTSTIASNHIAEQVSPR
EDHHHAHAHHHSPTEHHHHSDMTSPYSTAQSSHHSQQSQLSNGPDCAVSN
LHHVVSQATSGYNTSIQSADSMSMANGGEGASATTEPSVSNFNTLLDSIN
NSPWGKVDSHNHHSNTGRHG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036148XLOC_036148Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00057373TCONS_00057373Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR005542PBX
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 289..354
e-value: 6.8E-18
score: 75.4
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 290..349
e-value: 3.9E-19
score: 68.1
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 287..350
score: 17.556
NoneNo IPR availableGENE3D3.30.240.10coord: 335..399
e-value: 0.0027
score: 17.0
NoneNo IPR availableGENE3D1.10.10.60coord: 219..334
e-value: 9.7E-18
score: 63.6
NoneNo IPR availableCDDcd00086homeodomaincoord: 290..350
e-value: 4.70387E-17
score: 74.9724
IPR005542PBXPFAMPF03792PBCcoord: 103..288
e-value: 5.0E-87
score: 290.5
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 325..348
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 289..358

Blast
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BLAST of TCONS_00057373-protein vs. Swiss-Prot (Human)
Match: PBX3 (Pre-B-cell leukemia transcription factor 3 OS=Homo sapiens GN=PBX3 PE=1 SV=1)

HSP 1 Score: 460.299 bits (1183), Expect = 1.974e-159
Identity = 224/283 (79.15%), Postives = 250/283 (88.34%), Query Frame = 0 
Query:   88 PPPPQMLDDENTEMRKQEIGDILHQIMNITDQSLDEAQARKQALNCHRLKPALFTVLCEIKEKTVLNMRSQVEDEPPDPQLMRLDNMLLAEGVAGSDKSGSTAAAAAAVH------DSQIENVDYKMKLSQIRQIYHTELEKYEQACSEFTTHVMNLLREQSRTRPVSKNEIERMVNVIHWKFNSIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQSTEILNEYFYSHLSNPYPSEEAKEELARKCGISVSQVSNWFGNKRIRYKKNIGKAQEEANMYAAK 364
            PPPP   +  + + RKQ+IGDILHQIM ITDQSLDEAQA+K ALNCHR+KPALF+VLCEIKEKT L++R   E++PPDPQLMRLDNMLLAEGV+G +K G +AAAAAA        D+ IE+ DY+ KL+QIRQIYHTELEKYEQAC+EFTTHVMNLLREQSRTRP+S  EIERMV +IH KF+SIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQ+TEILNEYFYSHLSNPYPSEEAKEELA+KC I+VSQVSNWFGNKRIRYKKNIGK QEEAN+YAAK
Sbjct:   28 PPPPHGHEGADGDGRKQDIGDILHQIMTITDQSLDEAQAKKHALNCHRMKPALFSVLCEIKEKTGLSIRGAQEEDPPDPQLMRLDNMLLAEGVSGPEKGGGSAAAAAAAAASGGSSDNSIEHSDYRAKLTQIRQIYHTELEKYEQACNEFTTHVMNLLREQSRTRPISPKEIERMVGIIHRKFSSIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKKCSITVSQVSNWFGNKRIRYKKNIGKFQEEANLYAAK 310
The following BLAST results are available for this feature:
BLAST of TCONS_00057373-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PBX31.974e-15979.15Pre-B-cell leukemia transcription factor 3 OS=Homo... [more]
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