TCONS_00056645-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056645-protein
Unique NameTCONS_00056645-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length652

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056645-protein ID=TCONS_00056645-protein|Name=TCONS_00056645-protein|organism=Clytia hemisphaerica|type=polypeptide|length=652bp
MKDLFSVDFRDAIRKVVRSELKEKFGIKIHKEKHKGTSSSTTTCQSKYFG
VPLEDVPSKSVKDDQYFRIPIFLADSLDYLNHHVKIEGLFRKSGSVGRQK
TLRELLEKDGTCCSCEFVQPHDIASLVKQFFRELPDPLLTRRYCPAFLKC
ISLNNTNDCIPALALCCLLLPDEHLRVLKYFVQFISEMANHSLESKMTLS
NLAIIFAPNLTASSSSKEKNGEKTLKDFTQIVDLLFKNAHLIGMVPDALF
NKALTMNQEGGFCSSSGDELDVATDEHPGRGRNLQRSDKKRDRSKSITGF
LRRNFKANEKTEKSSSSTNKHARSRTCEKPSTSKEDLLQIPTRTDSIKEF
GEPVWRNQHSEKPNTKRRNNSKTNMSPVRKSPRLSAREVHHATPPVISLA
KLKSVSNQVASTPRRLLQPIHGNQDRERVARALPSLPSRYGPPISSTALK
TKVTKTDENQIPKIPPPTKPKPRLTRSKSSTLHHSSGNNSIISQSSEKMT
IFATVTATTTDNNVETTTQQRQPVQPKLSRATQKPHVRKNRRQSSLDRRR
ARYASASQRIRRPKVSTSQKSLTDSNLSNQSISMEEVWSASSGFDDDTKD
RAFVENQSAALPPIATLDLSTTENHTPKPRTARRRLPKASSSTACCNDLF
DT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035677XLOC_035677Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056645TCONS_00056645Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000198RhoGAP_dom
IPR008936Rho_GTPase_activation_prot
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000198Rho GTPase-activating protein domainSMARTSM00324RhoGAP_3coord: 67..240
e-value: 6.4E-40
score: 148.6
IPR000198Rho GTPase-activating protein domainPFAMPF00620RhoGAPcoord: 70..216
e-value: 5.7E-34
score: 117.0
IPR000198Rho GTPase-activating protein domainPROSITEPS50238RHOGAPcoord: 51..243
score: 34.421
NoneNo IPR availableGENE3D1.10.555.10coord: 12..257
e-value: 1.3E-53
score: 181.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 266..390
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 619..640
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 433..495
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 512..578
IPR008936Rho GTPase activation proteinSUPERFAMILY48350GTPase activation domain, GAPcoord: 45..241

Blast
[Close]
BLAST of TCONS_00056645-protein vs. Swiss-Prot (Human)
Match: RHGBA (Rho GTPase-activating protein 11A OS=Homo sapiens GN=ARHGAP11A PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 4.059e-40
Identity = 109/300 (36.33%), Postives = 149/300 (49.67%), Query Frame = 0 
Query:   13 IRKVVRSELKEKFGIKIH-------KEKHKGTSSSTTTCQSKYFGVPLEDVPSKSVKDDQYFRIPIFLADSLDYLNHHVKIEGLFRKSGSVGRQKTLRELLEKDGTCCSCEFVQPHDIASLVKQFFRELPDPLLTRRYCPAFLKCISLNNTNDCIPALALCCLLLPDEHLRVLKYFVQFISEMANHSLESKMTLSNLAIIFAPNLTASSSSKEK---NGEKTLKDFTQIVDLLFKNAHLIGMVPDALFNKALTMNQEGGFCSS-SGDELDVATDEHPGRGRNLQRSDKKRDRSKSITGFL 301
            +R  +   L+  +GIK+        + +H+   ++ T    K FGVP   +P  +V   +Y  IP FL D+   L  H+  EGLFRKSGSV R K L+  ++    C S     P DIA L+KQFFRELP+P+L      A LK   L         L L CLL  D  + VL+YF  F+  ++  S E+KM  SNLA+IFAPNL  +S   EK   N EK L+    +V  L   A  IG VPD +  K   M    G C++ S +  +    E PG        + KR R +S+  F+
Sbjct:    7 VRLALLQHLRAFYGIKVKGVRGQCDRRRHE---TAATEIGGKIFGVPFNALPHSAVP--EYGHIPSFLVDACTSLEDHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSS--APPCDIAGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLLLSCLL-ADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNTEKKLRLQAAVVQTLIDYASDIGRVPDFILEKIPAMLGIDGLCATPSLEGFEEGEYETPG--------EYKRKRRQSVGDFV 290
The following BLAST results are available for this feature:
BLAST of TCONS_00056645-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RHGBA4.059e-4036.33Rho GTPase-activating protein 11A OS=Homo sapiens ... [more]
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