TCONS_00056271-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056271-protein
Unique NameTCONS_00056271-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length566

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056271-protein ID=TCONS_00056271-protein|Name=TCONS_00056271-protein|organism=Clytia hemisphaerica|type=polypeptide|length=566bp
TAELTLKDNLTNNLMCIDSASTPVNNIINKGDSRDHSTEWKTTEFVFPPK
ALKGIKISTQNRLIEDFQYLIEGESSEDSMLIIIPQIVSCEKGELEIFVA
NPLKEEVGALLSIVATPITTVEEPKFAPKEKCYKPYPLSPDEKEELDKLL
DEFKDVLADKTDPLGHTDRVEHEIITEHDQPIRQKCYRLSPAQKETLEKE
IEHQLEKKIIRRSNSPYSHPVVLVPKPCGGTRVCIDYRKLNKITVKDAHP
LPKIEEILDHLNGAKIFSTIDLLMGYHQIPMKPESIPKTAFVTHKGLFEY
VMMHMGLCNSAASFERLAEQVFALELWIFLLFYIDDLIIYSKTPEEHLQQ
LRVVLTRLRENKLQAKLSKCRFAMAQLTFLGHTVNAEGILPQDTNTTTIK
SFQYPKSQKELRSFLGMCSYYRKFIPNYGKIARSLNTLLKKDAKFQLTEE
MKMDFDTLKEKLVSPPLLHYPDYERIFIVVTDASKYAIGHIIAQEVSGRF
VPIKYGGRTLKAAEINYTISEKEALALVHAIQKNHQYLYGRAFVVYTDHQ
PLKNMVNAHDPTGRLS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035445XLOC_035445Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056271TCONS_00056271Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 224..384
e-value: 2.9E-23
score: 82.5
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 205..384
score: 12.668
NoneNo IPR availableGENE3D3.30.70.270coord: 298..390
e-value: 2.4E-23
score: 81.7
NoneNo IPR availableGENE3D3.10.10.10coord: 170..297
e-value: 3.4E-38
score: 129.9
NoneNo IPR availableGENE3D3.30.70.270coord: 391..516
e-value: 1.3E-38
score: 131.2
NoneNo IPR availableCDDcd09274RNase_HI_RT_Ty3coord: 478..565
e-value: 8.69609E-32
score: 117.979
NoneNo IPR availableCDDcd01647RT_LTRcoord: 208..384
e-value: 2.19075E-81
score: 254.057
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 149..561

Blast
[Close]
BLAST of TCONS_00056271-protein vs. Swiss-Prot (Human)
Match: RTL1 (Retrotransposon-like protein 1 OS=Homo sapiens GN=RTL1 PE=3 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 3.657e-19
Identity = 86/344 (25.00%), Postives = 145/344 (42.15%), Query Frame = 0 
Query:  213 SNSPYSHPVVLVPKPCGG-----TRVCIDYRKLNKITVKDAHPLPKIEEILDHLNGAKIFSTIDL--------LMGYHQIPMKPESIPKTAFVTHKGL-FEYVMMHMGLCNSAASF--ERLAEQVFALELWIFLLFYIDDLIIYSKTPEEHLQQLRVVLTRLRENKLQAKLSKCRFAMAQLTFLGHTVNAEGILPQDTNTTTIKSFQYPKSQKELRSFLGMCSYYRKFIPNYGKIARSLNTLLKKDAKFQLTEEMKMDFDTLKEKLVSPPLLHYPDYERIFIVVTDASKYAIGHIIAQ--EVSGRFVPIKYGGRTLKAAEINYTISEKEALALVHAIQKNHQYL 538
            S + Y  P     +P G       R+  +Y  L  +       +  I E+ D L+GA+ F+ ++L        + G+     + E + K AF    GL  E +  +     S      + +   +    L  F+L Y  +++IYS + EEHL  +R VL R R + +   L K +F    + FLG  V  +G+       T I  +  P S+  LR+F+     YR F+  +  IA  L   L    +F    E +  F+ LK      PLLH+P  +  F + T  +  A+   + Q  + +G+     +  R +   E+ Y+ +E + L +  A     +YL
Sbjct:  604 SETFYECPSTAPWEPVGARMQERARLQEEYWDLQDMLTNRQDYIQMIPELFDQLHGAEWFTKLELRGTIVEESVNGH-----RTEDVWKAAF----GLELEEMKSYQPFALSPDPIIPQNVIHFILKDMLGFFVLSYGQEVLIYSMSQEEHLHHVRQVLVRFRHHNVYCSLDKSQFHRQTVEFLGFVVTPKGVKLNKNVMTIITGYPTPGSKLSLRNFIEFVFPYRHFVERFSIIAEPLVRQLLSSYQFYWGVEEQEAFECLKRAFRKAPLLHHPKPQNPFYLETGVTGTALHASLIQIDDQTGKRACCAFYSRNISPIEVEYSQAEMKILPIRAAFMVWCRYL 938
The following BLAST results are available for this feature:
BLAST of TCONS_00056271-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RTL13.657e-1925.00Retrotransposon-like protein 1 OS=Homo sapiens GN=... [more]
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