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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00054981-protein ID=TCONS_00054981-protein|Name=TCONS_00054981-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1052bp
MVFKEKGIPVGNTFLESLTEKFDRSVSNFVLGNAESLRDYPIVYCSDGFC
ELTGYNRYEVMGNSCHCDFLYSLQTDYSTVDRIKDALRQEKELTAEIDLA
KKDGSHFRCVLDTVPIRNESGDVVLFLVSHKEVQHKPHQSIKSEVSLKPT
PPSGVTKTRKFSRDVLFHLQKRYQGNSQSPTSQVGNPESQLIPEYKLENT
VLPSLMLLHFGRLRLIWDWIILLLVAYLSILLPFNVAFKEHHNLKPFFIA
DFCLEFIFITDIILNFRTTYINAKTGRLVTNPKQIAFNYLKHWFVLDMIA
VLPFDVIYFCHNDWAYIVAVLKLTRLLRLFRIGRRVSRSIEYTGTLLVLM
MFSFTLLSHWLACIWYVIGFEELHAGQTTGWLMKLGDQVQKPYRNQTRGG
PSYSEEYISALYFIFTSLTTVGFGNISPNTVAEKVFSVIVLILGAIVQSA
IFGNMTAIIQKLYASRARFHAKASQIKQFVQHHQIDGDLQKRIESWFVSY
WSVSNGVNTEEMLESFPSELQADICLHLYRRFLTLPCFSHASRGCLRSIS
SKVRKANFSPGELIIKEKDAINTLFFMERGTVEIVQREFIVAILGSGDVF
GEDICKSSQSNHRSNGDVKALMHCEVLFLSRDSMRDVVRFYSDFGETFSR
LLQLSFDLSHVKMQKPSIGLGSIVEEDEGQSAISMTSSSDEESYHDVTNK
PRNTKKKNSLPLWQLRSIQNELNNSPSPSLKFRLMKLESSSTCSENSEIV
CKLKKSPEAEQSFDDTAVDTKDEEVQTDTISIDSTSVIKNFDIVEPSPAT
KRRLIRANNGSGFRRSRYAASYFANHCPEEDSQDSSTREREIPQIIENMH
TQQTIAQPKENRVKSTPRLRKRNNNSKNHFLQKEGIPQQSNYVTKTTTLN
NGYPSIVIDTEYDGNNNPNDSKNRPDVSPIRNTNLLDSFNHDQDQGIYSL
CSDSSVYNERPVAMTSSVHDEHLTEWLDHVTRFTKATLSKDTTLNSSQDS
VIDPEHFHQMRGELGTLRNEISEIKSGMMALTELVRISVAGKPTSENSET
GV Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006813 | potassium ion transport |
| GO:0055085 | transmembrane transport |
| GO:0006811 | ion transport |
| GO:0000160 | phosphorelay signal transduction system |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005249 | voltage-gated potassium channel activity |
| GO:0005216 | ion channel activity |
| GO:0000155 | phosphorelay sensor kinase activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006811 |
ion transport |
| biological_process |
GO:0000160 |
phosphorelay signal transduction system |
| biological_process |
GO:0006813 |
potassium ion transport |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005216 |
ion channel activity |
| molecular_function |
GO:0000155 |
phosphorelay sensor kinase activity |
| molecular_function |
GO:0005249 |
voltage-gated potassium channel activity |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 83..103 |
| None | No IPR available | GENE3D | 1.20.120.350 | | coord: 214..345
e-value: 2.1E-13
score: 49.7 |
| None | No IPR available | GENE3D | 1.10.287.70 | | coord: 346..463
e-value: 5.9E-25
score: 86.5 |
| None | No IPR available | GENE3D | 3.30.450.20 | | coord: 23..191
e-value: 1.5E-14
score: 53.1 |
| None | No IPR available | GENE3D | 1.10.287.630 | | coord: 464..517
e-value: 4.4E-19
score: 68.1 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 855..877 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 679..706 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 911..935 |
| None | No IPR available | CDD | cd00038 | CAP_ED | coord: 538..648
e-value: 5.77355E-20
score: 86.6109 |
| None | No IPR available | SUPERFAMILY | 81324 | Voltage-gated potassium channels | coord: 400..461
coord: 210..372 |
| IPR003938 | Potassium channel, voltage-dependent, EAG/ELK/ERG | PRINTS | PR01463 | EAGCHANLFMLY | coord: 433..444
score: 45.83
coord: 501..508
score: 45.31
coord: 209..218
score: 35.94
coord: 251..261
score: 38.92
coord: 618..626
score: 45.14
coord: 356..366
score: 76.14
coord: 451..460
score: 76.88
coord: 407..424
score: 70.66
coord: 227..234
score: 32.42
coord: 262..271
score: 69.38 |
| IPR003949 | Potassium channel, voltage-dependent, EAG | PRINTS | PR01464 | EAGCHANNEL | coord: 639..654
score: 50.0
coord: 114..127
score: 71.43
coord: 295..303
score: 41.98
coord: 186..203
score: 30.86
coord: 509..521
score: 30.77 |
| IPR000595 | Cyclic nucleotide-binding domain | SMART | SM00100 | cnmp_10 | coord: 537..656
e-value: 1.3E-15
score: 67.9 |
| IPR000595 | Cyclic nucleotide-binding domain | PFAM | PF00027 | cNMP_binding | coord: 557..638
e-value: 5.4E-12
score: 45.5 |
| IPR000595 | Cyclic nucleotide-binding domain | PROSITE | PS50042 | CNMP_BINDING_3 | coord: 537..638
score: 17.373 |
| IPR000014 | PAS domain | TIGRFAM | TIGR00229 | TIGR00229 | coord: 42..134
e-value: 2.5E-6
score: 25.6 |
| IPR000014 | PAS domain | PFAM | PF13426 | PAS_9 | coord: 39..132
e-value: 1.1E-13
score: 51.3 |
| IPR000014 | PAS domain | PROSITE | PS50112 | PAS | coord: 42..64
score: 8.59 |
| IPR000014 | PAS domain | CDD | cd00130 | PAS | coord: 42..133
e-value: 2.79844E-6
score: 45.7019 |
| IPR000014 | PAS domain | SUPERFAMILY | 55785 | PYP-like sensor domain (PAS domain) | coord: 38..130 |
| IPR005821 | Ion transport domain | PFAM | PF00520 | Ion_trans | coord: 216..465
e-value: 9.9E-35
score: 119.8 |
| IPR014710 | RmlC-like jelly roll fold | GENE3D | 2.60.120.10 | | coord: 518..663
e-value: 3.0E-22
score: 78.4 |
| IPR000700 | PAS-associated, C-terminal | PROSITE | PS50113 | PAC | coord: 93..145
score: 8.674 |
| IPR018490 | Cyclic nucleotide-binding-like | SUPERFAMILY | 51206 | cAMP-binding domain-like | coord: 465..652 |
Blast
BLAST of TCONS_00054981-protein vs. Swiss-Prot (Human)
Match: KCNH4 (Potassium voltage-gated channel subfamily H member 4 OS=Homo sapiens GN=KCNH4 PE=2 SV=1) HSP 1 Score: 507.294 bits (1305), Expect = 4.649e-163 Identity = 271/687 (39.45%), Postives = 420/687 (61.14%), Query Frame = 0
Query: 12 NTFLESLTEKFDRSVSNFVLGNAESLRDYPIVYCSDGFCELTGYNRYEVMGNSCHCDFLYSLQTDYSTVDRIKDALRQEKELTAEIDLAKKDGSHFRCVLDTVPIRNESGDVVLFLVSHKEVQHKPHQSIKS---------EVSLKPTPPSGVT----KTRKFSRDVLF----HLQKRYQGNSQSPTSQVGNPESQLIPEYKLENTVLPSLMLLHFGRLRLIWDWIILLLVAYLSILLPFNVAFK--------EHHNLKPFFIADFCLEFIFITDIILNFRTTYINAKTGRLVTNPKQIAFNYLKHWFVLDMIAVLPFDVIYFCHNDWAYIVAVLKLTRLLRLFRIGRRVSRSIEYTGTLLVLMMFSFTLLSHWLACIWYVIGFEELHAGQT----TGWLMKLGDQVQKPYRNQTRGGPSYSEEYISALYFIFTSLTTVGFGNISPNTVAEKVFSVIVLILGAIVQSAIFGNMTAIIQKLYASRARFHAKASQIKQFVQHHQIDGDLQKRIESWFVSYWSVSNGVNTEEMLESFPSELQADICLHLYRRFLTLPCFSHASRGCLRSISSKVRKANFSPGELIIKEKDAINTLFFMERGTVEIVQREFIVAILGSGDVFGEDICKSSQSNH---------RSNGDVKALMHCEVLFLSRDSMRDVVRFYSDFGETFSRLL--QLSFDL 658
NTFL+++ +FD + SNF+L NA+ R +PIVYCSDGFCELTGY R EVM +C C FLY +T + R+ AL +E AEI +KDGS F C+LD +PI+NE G+VVLFL S K++ + E SL G T R+ SR VL H +R QG ++ + V P+ +PEYK+ + +LLH+ + IWD +ILL Y+++ +P+NV F H L ++D +E +FI DIILNFRTTY++ ++G++++ P+ I +YL WF +D+IA LPFD++Y + +V +LK RLLRL R+ +++ R + + +L L+M F LL+HW+ACIWYVIG E+ A GWL +LG +++ PY N + GGPS YI+ALYF +SLT+VGFGN+ NT AEK+FS+ +++GA++ + +FGN+TAIIQ++Y+ R+ +H++ +K F++ H++ L++R+ +F + W+V++G++ E+L FP EL+ADI +HL R L LP F ASRGCLR++S ++ + +PGE +++ DA+ +++ G++E+++ ++AILG GD+ G DI + Q +++ DVKAL +C + LS + +V+R Y ++G F L L+F+L
Sbjct: 12 NTFLDTIATRFDGTHSNFLLANAQGTRGFPIVYCSDGFCELTGYGRTEVMQKTCSCRFLYGPETSEPALQRLHKALEGHQEHRAEICFYRKDGSAFWCLLDMMPIKNEMGEVVLFLFSFKDITQSGSPGLGPQGGRGDSNHENSLGR---RGATWKFRSARRRSRTVLHRLTGHFGRRGQGGMKA-NNNVFEPKPS-VPEYKVASVGGSRCLLLHYSVSKAIWDGLILLATFYVAVTVPYNVCFSGDDDTPITSRHTL----VSDIAVEMLFILDIILNFRTTYVS-QSGQVISAPRSIGLHYLATWFFIDLIAALPFDLLYIFNITVTSLVHLLKTVRLLRLLRLLQKLERYSQCSAVVLTLLMSVFALLAHWMACIWYVIGRREMEANDPLLWDIGWLHELGKRLEVPYVNGSVGGPSRRSAYIAALYFTLSSLTSVGFGNVCANTDAEKIFSICTMLIGALMHAVVFGNVTAIIQRMYSRRSLYHSRMKDLKDFIRVHRLPRPLKQRMLEYFQTTWAVNSGIDANELLRDFPDELRADIAMHLNREILQLPLFGAASRGCLRALSLHIKTSFCAPGEYLLRRGDALQAHYYVCSGSLEVLRDNMVLAILGKGDLIGADIPEPGQEPGLGADPNFVLKTSADVKALTYCGLQQLSSRGLAEVLRLYPEYGAAFRAGLPRDLTFNL 688
The following BLAST results are available for this feature:
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