TCONS_00053314-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053314-protein
Unique NameTCONS_00053314-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length195

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053314-protein ID=TCONS_00053314-protein|Name=TCONS_00053314-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
MDFKIKLAIFLLSLSTISCHSQCCKGKDGKDGRDGRDGRDGKDGESCSVS
EVQQVVEKNWKECAWNRIEDGRDYGLIKSCAFNKKSNSSYLRVAVAGDMR
LHNCNNCCKRWFVTFDDKECSPIPIDGIVYLMIGKGTQNTHRPRVIRGHC
KIPKRGAVNVSINVGDCPDTGPGDAYTGTQSSFRIFIEEVNAPQP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033649XLOC_033649Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053314TCONS_00053314Clytia hemisphaericatranscript
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..46
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..19
score: 6.0

Blast
[Close]
BLAST of TCONS_00053314-protein vs. Swiss-Prot (Human)
Match: CTHR1 (Collagen triple helix repeat-containing protein 1 OS=Homo sapiens GN=CTHRC1 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.185e-34
Identity = 71/170 (41.76%), Postives = 94/170 (55.29%), Query Frame = 0 
Query:   26 GKDGKDGRDGRDGRDGKDGESCSVSEVQQVVEKNWKECAWNRIEDGRDYGLIKSCAFNKKSNSSYLRVAVAGDMRLHNCNNCCKRWFVTFDDKECS-PIPIDGIVYLMIGK----GTQNTHRPRVIRGHCKIPKRGAVNVSINVGDCPDTGPGDAYTGTQSSFRIFIEEV 190
            G  G  G  GRDG  G+ GE C     ++    N+K+C+W+ +  G D G I  C F K  ++S LRV  +G +RL   N CC+RW+ TF+  ECS P+PI+ I+YL  G      T N HR   + G C+    G V+V+I VG C D   GDA TG  S  RI IEE+
Sbjct:   73 GIPGTPGIPGRDGFKGEKGE-CLRESFEESWTPNYKQCSWSSLNYGIDLGKIAECTFTKMRSNSALRVLFSGSLRLKCRNACCQRWYFTFNGAECSGPLPIEAIIYLDQGSPEMNSTINIHRTSSVEGLCEGIGAGLVDVAIWVGTCSDYPKGDASTGWNSVSRIIIEEL 241
The following BLAST results are available for this feature:
BLAST of TCONS_00053314-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTHR11.185e-3441.76Collagen triple helix repeat-containing protein 1 ... [more]
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