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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053314 ID=TCONS_00053314|Name=TCONS_00053314|organism=Clytia hemisphaerica|type=transcript|length=987bp
AATAAAATGAAAGAGTCGTCTACACTCCTCCCTGGAGCTCTCCACTAGAC
AATAAAAGAACTACCCAAGCTGGAACATTACCACATACACTTTGATTGTT
CTAAATACTTAATATTGTATAAGTACCAAACCAACAGCCTTGGCGAAGGA
TGgatttcaaaatcaaacttgCAATTTTTCTACTCTCGCTATCAACAATC
TCATGTCACTCCCAatgttgtaaagggaaagatgGTAAGGACGGGCGCGA
CGGGCGAGATGGACGCGATGGAAAAGATGGTGAAAGCTGTAGTGTTTCAG
AAGTTCAACAAGTCGTCGAAAAGAATTGGAAAGAGTGTGCTTGGAATAGG
ATCGAAGATGGCCGAGACTACGGGTTGATCAAGAGTTGTGCATTCAACAA
AAAGTCGAATTCCAGTTACCTGAGAGTGGCTGTTGCAGGAGATATGAGAC
TTCACAACTGCAATAACTGCTGCAAGCGTTGGTTCGTGACGTTTGATGAC
AAGGAATGTTCGCCGATACCTATCGACGGGATTGTTTACCTTATGATCGG
AAAAGGTACTCAGAATACACATCGACCAAGAGTTATTCGTGGTCATTGTA
AAATCCCCAAACGAGGAGCTGTAAACGTTTCCATCAACGTAGGCGATTGT
CCAGACACAGGACCTGGTGATGCCTACACGGGAACGCAATcttctttcag
aatcttcattgAGGAAGTGAATGCACCACAACCGTAGAAACTGCTTGTAG
GTTTCACACTTTTGAGTTTATATCTTGAAGAGTATAAACATCACCAATAA
ATAACtatgttttctattttctttataTATCAACTCGACCATTTACTATC
ATTGTGCGCaaaagtatgcaaaaatagtaagcaattcttttgaaaaaaat
taaagattgaATTTTATTTCGCTAGATCAGGGCTATCCAGTGAAATCAGT
AGGGAAAACTGTCCTTGAAGTCGTCCTTAAAAGAGGG Run BLAST on NCBI protein sequence of TCONS_00053314-protein >TCONS_00053314-protein ID=TCONS_00053314-protein|Name=TCONS_00053314-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
MDFKIKLAIFLLSLSTISCHSQCCKGKDGKDGRDGRDGRDGKDGESCSVS
EVQQVVEKNWKECAWNRIEDGRDYGLIKSCAFNKKSNSSYLRVAVAGDMR
LHNCNNCCKRWFVTFDDKECSPIPIDGIVYLMIGKGTQNTHRPRVIRGHC
KIPKRGAVNVSINVGDCPDTGPGDAYTGTQSSFRIFIEEVNAPQP Run BLAST on NCBI transcript from alignment at scaffold_228:731899..733577+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053314 ID=TCONS_00053314|Name=TCONS_00053314|organism=Clytia hemisphaerica|type=transcript|length=1679bp|location=Sequence derived from alignment at scaffold_228:731899..733577+ (Clytia hemisphaerica)
AATAAAATGAAAGAGTCGTCTACACTCCTCCCTGGAGCTCTCCACTAGAC
AATAAAAGAACTACCCAAGCTGGAACATTACCACATACACTTTGATTGTT
CTAAATACTTAATATTGTATAAGGTAAGGCGGATTGATTGAATTTTCTCA
CAATAACAACGGAAAAAAAGGTTGAAGACAAAATGCAGCCTCACAAGCGC
CTAAAATCATAGTACAAATTTGACTGAAAGCACCTCATTGTATACTCGAT
AGTGACCTGAAAACTTATATTCTTAAAGCAAGGCTTTTCGTCTGAGACAG
AAATGGATTTTACACCGAATATTAGCAGAACAAGTTTTTTCAGCAAGTTT
CGGCGAATTATGCGAGAATTTTAATAAGGAAAAGCCTTTTGATAATACTT
CATTAAGAGACGGAAGATAACTTTTAACTCTGCATTAAGTTGAtaacaaa
attatcaaaacttaTTATTTATACAGTACCAAACCAACAGCCTTGGCGAA
GGATGgatttcaaaatcaaacttgCAATTTTTCTACTCTCGCTATCAACA
ATCTCATGTCACTCCCAatgttgtaaagggaaagatgGTAAGGACGGGCG
CGACGGGCGAGATGGACGCGATGGAAAAGATGGTGAAAGCTGTAGTGTTT
CAGAAGTTCAACAAGTCGTCGAAAAGAATTGGAAAGAGTGTGCTTGGAAT
AGGATCGAAGATGGCCGAGACTACGGGTTGATCAAGGTAAGAGCCAGCCA
GCCggaatatcttttttaaattctactTGAAAAGTGGTCACAGTAAGACC
TTTCTTCTGAGACGAAAATTTGGTTTTACAAAGCAAATTAGCATATTCAT
tgtaattttggtgaattttagAATGGAAAAGCCCTTTTATATACTTCATT
GAGACGACAATCTGGCTTAGACTGAAGAACTTTTAATACTGAATCTGCAA
ACCAGATTAGTACTCATTGTCAACAGGACGatgcaaaaaatattgaaata
agaatgaaaaatatttgatacaGATTACCtctcaaaaactaaaattaaTC
TTCCGAATATTCTCTATTTTTTTAGAGTTGTGCATTCAACAAAAAGTCGA
ATTCCAGTTACCTGAGAGTGGCTGTTGCAGGAGATATGAGACTTCACAAC
TGCAATAACTGCTGCAAGCGTTGGTTCGTGACGTTTGATGACAAGGAATG
TTCGCCGATACCTATCGACGGGATTGTTTACCTTATGATCGGAAAAGGTA
CTCAGAATACACATCGACCAAGAGTTATTCGTGGTCATTGTAAAATCCCC
AAACGAGGAGCTGTAAACGTTTCCATCAACGTAGGCGATTGTCCAGACAC
AGGACCTGGTGATGCCTACACGGGAACGCAATcttctttcagaatcttca
ttgAGGAAGTGAATGCACCACAACCGTAGAAACTGCTTGTAGGTTTCACA
CTTTTGAGTTTATATCTTGAAGAGTATAAACATCACCAATAAATAACtat
gttttctattttctttataTATCAACTCGACCATTTACTATCATTGTGCG
Caaaagtatgcaaaaatagtaagcaattcttttgaaaaaaattaaagatt
gaATTTTATTTCGCTAGATCAGGGCTATCCAGTGAAATCAGTAGGGAAAA
CTGTCCTTGAAGTCGTCCTTAAAAGAGGG Coding sequence (CDS) from alignment at scaffold_228:731899..733577+ >TCONS_00053314 ID=TCONS_00053314|Name=TCONS_00053314|organism=Clytia hemisphaerica|type=CDS|length=1176bp|location=Sequence derived from alignment at scaffold_228:731899..733577+ (Clytia hemisphaerica)
ATGgatttcaaaatcaaacttgCAATTTTTCTACTCTCGCTATCAACAAT
CTCATGTCACTCCCAatgttgtaaagggaaagatgGTAAGGACGGGCGCG
ACGGGCGAGATGGACGCGATGGAAAAGATGGTGAAAGCTGTAGTGTTTCA
GAAGTTCAACAAGTCGTCGAAAAGAATTGGAAAGAGTGTGCTTGGAATAG
GATCGAAGATGGCCGAGACTACGGGTTGATCAAGAGTTGTGCATTCAACA
AAAAGTCGAATTCCAGTTACCTGAGAGTGGCTGTTGCAGGAGATATGAGA
CTTCACAACTGCAATAACTGCTGCAAGCGTTGGTTCGTGACGTTTGATGA
CAAGGAATGTTCGCCGATACCTATCGACGGGATTGTTTACCTTATGATCG
GAAAAGGTACTCAGAATACACATCGACCAAGAGTTATTCGTGGTCATTGT
AAAATCCCCAAACGAGGAGCTGTAAACGTTTCCATCAACGTAGGCGATTG
TCCAGACACAGGACCTGGTGATGCCTACACGGGAACGCAATcttctttca
gaatcttcattgAGGAAGTGAATGCACCACAACCGTAGATGgatttcaaa
atcaaacttgCAATTTTTCTACTCTCGCTATCAACAATCTCATGTCACTC
CCAatgttgtaaagggaaagatgGTAAGGACGGGCGCGACGGGCGAGATG
GACGCGATGGAAAAGATGGTGAAAGCTGTAGTGTTTCAGAAGTTCAACAA
GTCGTCGAAAAGAATTGGAAAGAGTGTGCTTGGAATAGGATCGAAGATGG
CCGAGACTACGGGTTGATCAAGAGTTGTGCATTCAACAAAAAGTCGAATT
CCAGTTACCTGAGAGTGGCTGTTGCAGGAGATATGAGACTTCACAACTGC
AATAACTGCTGCAAGCGTTGGTTCGTGACGTTTGATGACAAGGAATGTTC
GCCGATACCTATCGACGGGATTGTTTACCTTATGATCGGAAAAGGTACTC
AGAATACACATCGACCAAGAGTTATTCGTGGTCATTGTAAAATCCCCAAA
CGAGGAGCTGTAAACGTTTCCATCAACGTAGGCGATTGTCCAGACACAGG
ACCTGGTGATGCCTACACGGGAACGCAATcttctttcagaatcttcattg
AGGAAGTGAATGCACCACAACCGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053314-exon-scaffold_228-1491911889:731899..732021 | TCONS_00053314-exon-scaffold_228-1491911889:731899..732021 | Clytia hemisphaerica | exon |
| TCONS_00053314-exon-scaffold_228-1510915933:731899..732021 | TCONS_00053314-exon-scaffold_228-1510915933:731899..732021 | Clytia hemisphaerica | exon |
| TCONS_00053314-exon-scaffold_228-1575043694:731899..732021 | TCONS_00053314-exon-scaffold_228-1575043694:731899..732021 | Clytia hemisphaerica | exon |
| TCONS_00053314-exon-scaffold_228-1491911889:732375..732634 | TCONS_00053314-exon-scaffold_228-1491911889:732375..732634 | Clytia hemisphaerica | exon |
| TCONS_00053314-exon-scaffold_228-1510915933:732375..732634 | TCONS_00053314-exon-scaffold_228-1510915933:732375..732634 | Clytia hemisphaerica | exon |
| TCONS_00053314-exon-scaffold_228-1575043694:732375..732634 | TCONS_00053314-exon-scaffold_228-1575043694:732375..732634 | Clytia hemisphaerica | exon |
| TCONS_00053314-exon-scaffold_228-1491911889:732974..733577 | TCONS_00053314-exon-scaffold_228-1491911889:732974..733577 | Clytia hemisphaerica | exon |
| TCONS_00053314-exon-scaffold_228-1510915933:732974..733577 | TCONS_00053314-exon-scaffold_228-1510915933:732974..733577 | Clytia hemisphaerica | exon |
| TCONS_00053314-exon-scaffold_228-1575043694:732974..733577 | TCONS_00053314-exon-scaffold_228-1575043694:732974..733577 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_228 | supercontig | scaffold_228:731899..733577 + |
Blast
BLAST of TCONS_00053314 vs. Swiss-Prot (Human)
Match: CTHR1 (Collagen triple helix repeat-containing protein 1 OS=Homo sapiens GN=CTHRC1 PE=1 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 4.338e-27 Identity = 60/137 (43.80%), Postives = 80/137 (58.39%), Query Frame = 3
Query: 324 NWKECAWNRIEDGRDYGLIKSCAFNKKSNSSYLRVAVAGDMRLHNCNNCCKRWFVTFDDKECS-PIPIDGIVYLMIGK----GTQNTHRPRVIRGHCKIPKRGAVNVSINVGDCPDTGPGDAYTGTQSSFRIFIEEV 719
N+K+C+W+ + G D G I C F K ++S LRV +G +RL N CC+RW+ TF+ ECS P+PI+ I+YL G T N HR + G C+ G V+V+I VG C D GDA TG S RI IEE+
Sbjct: 105 NYKQCSWSSLNYGIDLGKIAECTFTKMRSNSALRVLFSGSLRLKCRNACCQRWYFTFNGAECSGPLPIEAIIYLDQGSPEMNSTINIHRTSSVEGLCEGIGAGLVDVAIWVGTCSDYPKGDASTGWNSVSRIIIEEL 241
The following BLAST results are available for this feature:
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