TCONS_00002722 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00002722
Unique Name	TCONS_00002722
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	884

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000021:652432..657817-

transcript sequence

>TCONS_00002722 ID=TCONS_00002722|Name=TCONS_00002722|organism=Clytia hemisphaerica|type=transcript|length=884bp
CACAATCAACAACAGAAGCTTCAACAACTAAATCACCAACAACTCaatca
caaacaacaaaagcGTCGACAACTCAATCACAATCAACAACAGAAGCTTC
AACAACTCCATCGCAAACAACAGAGGCTATTATTACTCAACCACAATCAA
CAACAGAATCACCAACAACAGAATCTCCAACAACAGAATCTTCAACAACA
GAATCACCAACAACTCAATCACAAACAACAGAAGCCTCAACAACCCAATT
ACAATCAACAACAGAAGCTTCAACAACTCCATCACAAACAACAGAGGCTC
CAACAACCCAATTACAATCAACAACAGAATCTCCAACAACTACATCGCAA
ACAACAACAGAATCCCAAACAACTTCTTCGCAAACAACAGAATCTCAAAC
AACAGAATCTCAAACAACAGAATTTCAAACAACAGAATCCCAAACAACAG
AATCCCAAACAACAGAATCTCAAACAACGGAACAATCAACAACCGTTTCA
CCAACAACAGCACCAATTTGTGATTGTAAAAACCCCTTACCTGTGGGTGT
TTCAGATGGAAGGATTCCTGATTCCCAAATGAAATCCAATTCTGTCAGAG
TTACTAGCCCAGGACCATTCAACACTGGTCCAGCTCAGGCTCGTTTGAAC
AACAAATTAACCTCGTCTGGATCAGGAGCCTGGGAaccaaaagacaaaga
agctcATCTTGATatcattttcaacaaaatgGAAGATGTTCGAGAAATCA
GAACACAGGGTTCACCAAGAGTCAATCGATTCGCCAAGCGATATTTCGTC
TTTTACTCCCTTGAtggcgaaaagtttgaaaatgaaCCTCTTCAATCGGC
TGATGGTTCGTATATCTTCGAAGGAAATACTGAC

Run BLAST on NCBI

transcript from alignment at sc0000021:652432..657817-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00002722 ID=TCONS_00002722|Name=TCONS_00002722|organism=Clytia hemisphaerica|type=transcript|length=5386bp|location=Sequence derived from alignment at sc0000021:652432..657817- (Clytia hemisphaerica)
CACAATCAACAACAGAAGCTTCAACAACTAAATCACCAACAACTCAATCA
CAAACAACAAAAGCGTCGACAACTCAATCACAATCAACAACAGAAGCTTC
AACAACTCCATCGCAAACAACAGAGGCTATTATTACTCAACCACAATCAA
CAACAGAATCACCAACAACAGAATCTCCAACAACAGAATCTTCAACAACA
GAATCACCAACAACTCAATCACAAACAACAGAAGCCTCAACAACCCAATT
ACAATCAACAACAGAAGCTTCAACAACTCCATCACAAACAACAGAGGCTC
CAACAACCCAATTACAATCAACAACAGAATCTCCAACAACTACATCGCAA
ACAACAACAGAATCCCAAACAACTTCTTCGCAAACAACAGAATCTCAAAC
AACAGAATCTCAAACAACAGAATTTCAAACAACAGAATCCCAAACAACAG
AATCCCAAACAACAGAATCTCAAACAACGGAACAATCAACAACCGTTTCA
CCAACAACAGCACCAATTTGTGATTGTAAAAACCCCTTACCTGTGGGTGT
TTCAGATGGAAGGATTCCTGATTCCCAAATGAAATCCAATTCTGTCAGAG
TTACTAGCCCAGGACCATTCAACACTGGTCCAGCTCAGGCTCGTTTGAAC
AACAAATTAACCTCGTCTGGATCAGGAGCCTGGGAACCAAAAGACAAAGA
AGCTCATCTTGATATCATTTTCAACAAAATGGAAGATGTTCGAGAAATCA
GAACACAGGGTTCACCAAGAGTCAATCGATTCGCCAAGCGATATTTCGTC
TTTTACTCCCTTGATGGCGAAAAGTTTGAAAATGAACCTCTTCAATCGGT
ATGTAGTATTTTTTCAGTTTCTGAGTGAATCCTATAGAATCCACTGACCT
TTATATATCCCTAAAACAACCTATATCCACCATCTTTGATCGAAGTTTTT
TTTGAATTGGTACCCGTAAAGAAACCATTGCAGTGTTAAAAATTAACGTC
TAACGTTGCTACATCATCAAACGTTTTCGAGGAAAAGTATATCTAGCGCT
CTCGATGCATTTAAACCGCTATAGGCCATTTCACGGTCGAAATGGATCAT
GGGTAATCAGGACTGATTGCGCCTCCATTACGGCTTCCCGTTGGCTAGAC
GCAAAAATCTTCAATTTTTTTCAAAACTTTTGACCAATAGTAAGTCGTTA
TTAGCGCGCAGTGGTCCTGATTACCCATTACGCTTTGCGACTGTGAAATG
GCCTATTGAGTAGTGCCGCCATTAGGTTGCCGCTTTTCAAAAACTCCGAT
CAGTTATTTTGCTTGGACGGGATTGAGAAACTTGGTCCAGGGTATATAAA
GGTCAGTGATAGAATCCCATCCATTATTTCATTAATTTCAGCTATGCACT
TGAAATCCGAAAATAACTCATCTCTCCATCCCTAATAATCTTCATCTTTA
CCACACTTATGTATGAGGGAAAATAATATTTCGTCGGCGACGGGTACTAC
ACGTATAATATAAATGCTTCTGTAGATATTGTACACTTCGAAAAACTCTC
CTTTAAACCCAATAAAATTTGTTTGAGTTTTTCATAATTATATCTTCTAA
GATGAATGAGACAAGACAAATTTTAGTGGCGAAAATAATAACACCTAAGA
AACAGCTGCTTTTTTTTGTGAATTTTTATTTTGGTAGGGGCAATTGTTTG
AGGTGGTTGTCTGAAGTGTAGGTTCGATTCTCCGGAATCAAGACGTAGTT
GTACGGTAAGATGGCTATTATTATTATTATTATACAGATTTACAAGCTAG
GCTCACGATGGGCCTCTAACCGATCTTCTTTCACATTCCTCTTGTAACAA
ATTTTTGTGGGTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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ACACTGCAGAACTGTTTTTGGAGAATATTCGCCTTTTCATTATCTTCGTG
CCGCAGGGATGATTTATCTTTTGGTGTTTCTAGAAGAGAGGAAACTCCAC
TAGCAGATTTCATCTTACTTCGCACCTTGTACTTCAAGGCCAGCAAATCC
TTTGACACCGACACACAGTTCTGACATACAAAGTTACAATGTATTCTTCG
GTCGTCGTTAAAAGCAGTTATCATATACGCTGGTAGCCTCGAACATAGAT
AGTGAACTAGTCTGTTACATTTTGAACATGCCAGGGTGTCCTCATTCTTG
TCATCTGCACATGCGTTGCCGGTACAAAGCAGGTTAGGTGTGTTTCTTTG
TCGGTTGGACGTCATTTGTGATGTATCAGGATGCTGGTAGAGTGTTTGAT
GGTGGAATAGAGTGTATTTTTGAGCGATTTTTATAGATTTTTCAGAAAAA
TTCAGATTTTGTTGAATTTGACTGTCGCTGCAAAAAGACCTCTTCACTCA
ACTTTAATTGACGTCAAATATACTATAATAAATAAATATACTTTCTCATT
CCAACAATCAAATCCTTCCTTGCGCATTTTGGTGATTTTTCCGATGTCTT
TTATGGGCATAGTTCTTCTTCTGTATACTTACTACTACTACTGCACGGTT
TAACGTCCGTTGTTCCCAGCAGCTGGGGTTGGACGCCTTCCTCTCTTGAT
GGCCGTACGCCATGCAATGCGATCGTTTGTCAGGTCGATNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCCATCGCGTTGTCATTTCGAACAAGCCTGCTAC
AGTCATCAACCGTGACTGCCCAGGTCGGGCTTCCATGAAGCAAAACGCCC
CTTACAGCCGAAGTAAAGACACGAATGGAAAAACCCCACGGCCATAGGAC
TAGCCAATTGAAGTTGAAATTAAATTTTTTAACATGATCAGTGTGGTAAA
AGGAAATTTTTACCGGGGATGAGAAAGCTTAGCCATCTTACTGTAAGTTT
AGTAATTGTCCTGTTACGTAGGTTAATAACTTTAATGTTTTTTTACTCAG
GCTGATGGTTCGTATATCTTCGAAGGAAATACTGAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_001463	XLOC_001463	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00002722-exon-sc0000021-1575043694:656970..657817	TCONS_00002722-exon-sc0000021-1575043694:656970..657817	Clytia hemisphaerica	exon
TCONS_00002722-exon-sc0000021-1575043694:652432..652467	TCONS_00002722-exon-sc0000021-1575043694:652432..652467	Clytia hemisphaerica	exon
TCONS_00002722-exon-sc0000021-1510915933:656970..657817	TCONS_00002722-exon-sc0000021-1510915933:656970..657817	Clytia hemisphaerica	exon
TCONS_00002722-exon-sc0000021-1510915933:652432..652467	TCONS_00002722-exon-sc0000021-1510915933:652432..652467	Clytia hemisphaerica	exon
TCONS_00002722-exon-sc0000021-1491911889:656970..657817	TCONS_00002722-exon-sc0000021-1491911889:656970..657817	Clytia hemisphaerica	exon
TCONS_00002722-exon-sc0000021-1491911889:652432..652467	TCONS_00002722-exon-sc0000021-1491911889:652432..652467	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000021	supercontig	sc0000021:652432..657817 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.460787	0.274228	0	0.42589	0.869178	0.692341	1.85549	3.06949	1.23559	2.45044	4.38449	3.29131	5.8804	7.54742	1.27817	1.20045	0.687842	1.03102	19.6651	17.1727	1.73115	1.70767	0.289448	1.17087	6.73442	7.55815	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00002722 vs. Swiss-Prot (Human)

BLAST of TCONS_00002722 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00002722 (transcript) - C. hemisphaerica