TCONS_00049013-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00049013-protein
Unique NameTCONS_00049013-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length788

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00049013-protein ID=TCONS_00049013-protein|Name=TCONS_00049013-protein|organism=Clytia hemisphaerica|type=polypeptide|length=788bp
MKLYNLILSLSLTITKVFSGNLTCHLEALLYPLELISKSTFSPKSSWLDP
DQMRNIYFNQTNDSIGLEQWLHNQQHNSTNKQSIQNLHTFSSALTKTLNY
ILQERTQQEILILTDYQPTHLFLKTLEQQLLNLNYKVDFKTINKENIHQL
NTIVTEMLSASISVNLLLLPWDLSQAVLDSAKRQFLLDKVISRTWITFNG
DRMTRTEKCVHDISIKSLVQSTYVMKRMVDSTTVCELKVNDTLIESNGRQ
LVDEISECSQKRPKLVITTLIDHPFVITTKMDIDPLGGYNCQFSYPCSLP
RTASNGTIVWELHCCAGLVIDIIMEIQKELNFDMELYGCPDRQYGSIKNG
SWTGMVNEVASGRADLAIQGLTVNAMRSSVVDFTTSFMLTSIGIVRRRRS
LQLPIVNWEFMKMLKLDLVLCLISSFAIVFVILFIYENINHYLRKDRYYP
TREAFSYVAGLTFQRDLAGKTPHKWSARVVAIVYAIAMTIVMTTYTANLT
ANNLTEADTDDFAGLKDSKITNPTPAFIYGVRKGTFNELYFKENIQPRLS
EAYQTFIRYYLTKTNSEGLENVRIGTFDAFVGDYVYLLYRLVTPKYCSVL
SIHKESSLDFPLGFAVQKNSKWNKLISGKIRELHENGLLDRIVNKWFFLP
KCLQDSLQAYKFPWEYIGGMLVAVAFVVLISIAVVCLETIYTRRKSKKTF
GHIGYEFHGIFRKKSTEVSKIDLNGLQTSLPVPGVVIANSNCKDSPKRNR
KESKISQNSTKLNGVELRARNGTQESTVQMDDSDVSEA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031135XLOC_031135Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00049013TCONS_00049013Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001320Iontro_rcpt
IPR019594Glu/Gly-bd
Vocabulary: Molecular Function
TermDefinition
GO:0004970ionotropic glutamate receptor activity
GO:0005234extracellular-glutamate-gated ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0005234 extracellular-glutamate-gated ion channel activity
molecular_function GO:0004970 ionotropic glutamate receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001320Ionotropic glutamate receptorSMARTSM00079GluR_14coord: 292..649
e-value: 1.1E-10
score: 51.5
IPR001320Ionotropic glutamate receptorPFAMPF00060Lig_chancoord: 420..752
e-value: 4.0E-10
score: 39.6
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainSMARTSM00918Lig_chan_Glu_bd_2coord: 300..361
e-value: 4.8E-9
score: 46.1
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainPFAMPF10613Lig_chan-Glu_bdcoord: 315..398
e-value: 2.5E-22
score: 79.1
NoneNo IPR availableGENE3D3.40.190.10coord: 260..418
e-value: 3.9E-24
score: 84.3
NoneNo IPR availableGENE3D3.40.190.10coord: 474..660
e-value: 2.4E-11
score: 42.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 741..788
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 257..282
coord: 528..647
coord: 314..405

Blast
[Close]
BLAST of TCONS_00049013-protein vs. Swiss-Prot (Human)
Match: NMD3A (Glutamate receptor ionotropic, NMDA 3A OS=Homo sapiens GN=GRIN3A PE=1 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 7.235e-48
Identity = 129/455 (28.35%), Postives = 219/455 (48.13%), Query Frame = 0 
Query:  265 LVITTLIDHPFVITTKMDIDPLGGYNCQFSYPCSLPRT--------------ASNGTIVWELH-CCAGLVIDIIMEIQKELNFDMELYGCPDRQYGSIKNGSWTGMVNEVASGRADLAIQGLTVNAMRSSVVDFTTSFMLTSIGIVRRRRSLQLPIVNWEFMKMLKLDLVLCLISSFAIVFVILFIYENINHYLRKDRYYPTREAFSYVAGLT------FQRDLAGKTPHKWSARVVAIVYAIAMTIVMTTYTANLTANNLTEADTDDFAGLKDSKITNPTPAFIYGVRKGTFNELYFKENIQPRLSEAYQTFIRYYLTKTNSEGLENVR--IGTFDAFVGDYVYLLYRLVTPKYCSVLSIHKESSLDFPLGFAVQKNSKWNKLISGKIRELHENGLLDRIVNKWFFLPKCLQDSL---QAYKFPWEYIGGMLVAVAFVVLISIAVVCLETIYTR 693
            L + TLI+HPFV T ++D + L    C     C  P T              +SN T+  +   CC G  ID++ +I +++NFD +LY   D +YG+ KNG WTG+V ++  G A +A+   ++N  RS V+DFT+ F  TS+GI+ R R    PI    FM  L   + L +  +  I  V L +YE  + +    +     + FS+ + L       F R +A K P  W+ R +  ++AI     ++TYTANL A  + E   ++ +G+ D K+ +P+  F +G  + +  E Y +++  P + E    ++R Y      +G+E ++      DAF+ D   L Y +     C +L++ K  +++   G  +  NS     IS  I +   +G +D + +KW+ +  C + S    +  +   ++  G+ V +     +SI     E I  R
Sbjct:  515 LRVVTLIEHPFVFTREVDDEGL----CPAGQLCLDPMTNDSSTLDSLFSSLHSSNDTVPIKFKKCCYGYCIDLLEKIAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLRGTAHMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRDTAAPIG--AFMWPLHWTMWLGIFVALHITAVFLTLYEWKSPFGLTPKGRNRSKVFSFSSALNICYALLFGRTVAIKPPKCWTGRFLMNLWAIFCMFCLSTYTANLAAVMVGEKIYEELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSF-PEMHE----YMRRYNVPATPDGVEYLKNDPEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEG-YGIGLPPNSPLTANISELISQYKSHGFMDMLHDKWYRVVPCGKRSFAVTETLQMGIKHFSGLFVLLCIGFGLSILTTIGEHIVYR 957
The following BLAST results are available for this feature:
BLAST of TCONS_00049013-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NMD3A7.235e-4828.35Glutamate receptor ionotropic, NMDA 3A OS=Homo sap... [more]
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