TCONS_00049013 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049013
Unique NameTCONS_00049013
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2572

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049013 ID=TCONS_00049013|Name=TCONS_00049013|organism=Clytia hemisphaerica|type=transcript|length=2572bp
CGAGAACGAATAAAAATTGGAGGAAAATTTCCCTCAGCGATGGCTTTTTT
TAACCGtgattattttgatgtttgttTGATTATCTTAAATGTTTTTTaga
gaaatatatttttactaAAGACTAAATCGAAAAGATTTCAACGATGAAGC
TTTATAACTTGATTCTATCGCTTTCGTTGACGATCACCAAAGTATTTTCC
GGCAACCTCACATGTCACCTCGAAGCACTTCTCTATCCACTGGAGCTAAT
ATCTAAATCAACATTTTCGCCAAAATCATCCTGGTTAGATCCAGATCAAA
TGAGGAACATTTATTTCAACCAAACAAATGATTCAATCGGTTTGGAACAA
TGGTTACACAATCAACAACATAACAGCACTAATAAACAATCAATACAAAA
TCTTCATACATTCTCATCTGCACTTACCAAGACTCTAAACTATATACTAC
AAGAACGAACACAACAAGAGATTTTAATATTAACAGACTATCAACCAACC
CACCTTTTTCTCAAAACATTGGAGCAACAACTTCTAAATCTAAACTATAA
GGTTGATTTCAAGAcaataaataaagaaaacattcatCAACTCAACACAA
TAGTGACAGAAATGTTGTCAGCCTCCATATCAGTCAATCTCCTTTTACTA
CCGTGGGATTTAAGCCAGGCTGTTTTAGATTCAGCCAAAAGAcaattttt
acttgataaagtTATTTCTAGAACGTGGATAACTTTCAATGGAGATCGAA
TGACTCGAACCGAGAAATGTGTACACGATATATCGATTAAATCGTTAGTT
CAATCGACTTATGTAATGAAACGAATGGTAGATAGTACAACTGTTTGTGA
GCTCAAAGTCAACGATACCTTAATCGAGTCGAATGGTCGTCAACTAGTCG
ATGAAATATCAGAATGTTCACAAAAACGACCGAAACTCGTCATCACTACC
TTAATCGATCACCCATTTGTTATTACTACTAAAATGGATATTGATCCATT
GGGTGGATATAATTGTCAATTCTCGTACCCATGTTCTTTACCCAGGACTG
CGTCAAACGGTACAATAGTCTGGGAACTACATTGCTGTGCTGGCCTTGTT
ATTGATATTATTATGGAGATACAGAAagaattgaattttgatatggAGCT
GTATGGATGTCCTGATCGCCAATATGGCTCTATCAAAAATGGTTCCTGGA
CTGGTATGGTCAACGAGGTGGCGTCTGGCCGAGCAGATTTAGCTATCCAA
GGTTTAACAGTGAATGCTATGAGGTCCTCGGTGGTCGATTTTACGACAAG
TTTTATGCTAACGTCAATCGGAATAGTACGCCGACGTCGTTCGCTACAAT
TGCCAATCGTGAATTGGGAATTTATGAAAATGCTAAAATTAGATCTTGTT
CTTTGTTTAATCTCATCATTTGCTattgtttttgtgattttgtttaTTTA
CGAGAATATTAACCATTATTTACGGAAGGACCGGTATTATCCGACTCGTG
AAGCATTTTCGTATGTCGCCGGATTAACTTTCCAACGTGATTTAGCTGGT
AAAACACCACATAAATGGTCAGCTAGAGTTGTTGCTATTGTTTATGCTAT
TGCTATGACGATTGTCATGACAACATATACAGCAAATTTAACAGCCAATA
ATTTGACGGAAGCCGATACCGATGATTTTGCTGGTTTGAAAGACTCAAAG
ATTACAAACCCAACACCAGCGTTCATATATGGTGTACGTAAGGGGACTTT
CAACGAGCTTTACTTCAAAGAGAACATACAACCACGATTGAGTGAAGCAT
ATCAAACATTTATACGTTATTATCTAACCAAAACCAATAGTGAGGGATTG
GAAAATGTGCGGATCGGGACATTCGACGCATTCGTTGGAGATTACGTCTA
TCTTTTATACCGCCTGGTAACACCCAAATACTGTTCCGTTCTTTCCATTC
ACAAAGAATCAAGTCTTGATTTCCCACTAGGATTTGCTgttcaaaaaaac
tcaaaatggaATAAACTTATATCTGGCAAAATACGCGAATTACATGAAAA
TGGTTTATTAGATCGGATCGTGAATAAATGGTTTTTCTTACCTAAGTGCT
TACAAGATTCTCTACAAGCTTATAAATTCCCTTGGGAATATATTGGAGGT
ATGTTGGTTGCAGTTGCTTTTGTTGTGCTAATTAGTATAGCTGTGGTATG
TTTAGAGACTATTTACACCAGACGAAAATCGAAGAAAACTTTTGGTCATA
TTGGTTATGAATTTCATGGGATTTTCCGTAAAAAATCGACGGAAGTTTCT
AAAATTGATTTGAATGGACTTCAAACTTCGTTGCCTGTACCAGGTGTTGT
TATTGCGAACTCAAATTGTAAGGATTCGCCGAAACGTAATCGTAAAGAGT
CAAAGATTTCACAGAATTCGACAAAATTAAACGGTGTCGAGTTAAGAGCT
CGAAACGGGACTCAAGAATCAACCGTTCAAATGGACGATTCTGACGTGAG
TGAAGCTTAGCAATTTTCTTTAAGGAATATGATTTTCTGTTAGaataaaa
tcgaaaattttgcGTATAAAAA
Run BLAST on NCBI

protein sequence of TCONS_00049013-protein

>TCONS_00049013-protein ID=TCONS_00049013-protein|Name=TCONS_00049013-protein|organism=Clytia hemisphaerica|type=polypeptide|length=788bp
MKLYNLILSLSLTITKVFSGNLTCHLEALLYPLELISKSTFSPKSSWLDP
DQMRNIYFNQTNDSIGLEQWLHNQQHNSTNKQSIQNLHTFSSALTKTLNY
ILQERTQQEILILTDYQPTHLFLKTLEQQLLNLNYKVDFKTINKENIHQL
NTIVTEMLSASISVNLLLLPWDLSQAVLDSAKRQFLLDKVISRTWITFNG
DRMTRTEKCVHDISIKSLVQSTYVMKRMVDSTTVCELKVNDTLIESNGRQ
LVDEISECSQKRPKLVITTLIDHPFVITTKMDIDPLGGYNCQFSYPCSLP
RTASNGTIVWELHCCAGLVIDIIMEIQKELNFDMELYGCPDRQYGSIKNG
SWTGMVNEVASGRADLAIQGLTVNAMRSSVVDFTTSFMLTSIGIVRRRRS
LQLPIVNWEFMKMLKLDLVLCLISSFAIVFVILFIYENINHYLRKDRYYP
TREAFSYVAGLTFQRDLAGKTPHKWSARVVAIVYAIAMTIVMTTYTANLT
ANNLTEADTDDFAGLKDSKITNPTPAFIYGVRKGTFNELYFKENIQPRLS
EAYQTFIRYYLTKTNSEGLENVRIGTFDAFVGDYVYLLYRLVTPKYCSVL
SIHKESSLDFPLGFAVQKNSKWNKLISGKIRELHENGLLDRIVNKWFFLP
KCLQDSLQAYKFPWEYIGGMLVAVAFVVLISIAVVCLETIYTRRKSKKTF
GHIGYEFHGIFRKKSTEVSKIDLNGLQTSLPVPGVVIANSNCKDSPKRNR
KESKISQNSTKLNGVELRARNGTQESTVQMDDSDVSEA
Run BLAST on NCBI

transcript from alignment at scaffold_15:190392..195117-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049013 ID=TCONS_00049013|Name=TCONS_00049013|organism=Clytia hemisphaerica|type=transcript|length=4726bp|location=Sequence derived from alignment at scaffold_15:190392..195117- (Clytia hemisphaerica)
CGAGAACGAATAAAAATTGGAGGAAAATTTCCCTCAGCGATGGCTTTTTT
TAACCGTGATTATTTTGATGTTTGTTTGATTATCTTAAATGTTTTTTAGA
GAAATATATTTTTACTAAAGACTAAATCGAAAAGATTTCAACGATGAAGC
TTTATAACTTGATTCTATCGCTTTCGTTGACGATCACCAAAGTATTTTCC
GGCAACCTCACATGTCACCTCGAAGCACTTCTCTATCCACTGGAGCTAAT
ATCTAAATCAACATTTTCGCCAAAATCATCCTGGTTAGATCCAGATCAAA
TGAGGAACATTTATTTCAACCAAACAAATGATTCAATCGGTTTGGAACAA
TGGTTACACAATCAACAACATAACAGCACTAATAAACAATCAATACAAAA
TCTTCATACATTCTCATCTGCACTTACCAAGACTCTAAACTATATACTAC
AAGAACGAACACAACAAGAGATTTTAATATTAACAGACTATCAACCAACC
CACCTTTTTCTCAAAACATTGGAGCAACAACTTCTAAATCTAAACTATAA
GGTTGATTTCAAGACAATAAATAAAGAAAACATTCATCAACTCAACACAA
TAGTGACAGAAATGTTGTCAGCCTCCATATCAGTCAATCTCCTTTTACTA
CCGTGGGATTTAAGCCAGGCTGTTTTAGATTCAGCCAAAAGACAATTTTT
ACTTGATAAAGTTATTTCTAGAACGTGGATAACTTTCAATGGAGATCGAA
TGACTCGAACCGAGAAATGTGTACACGATATATCGATTAAATCGTTAGTT
CAATCGACTTATGTAATGAAACGAATGGTAGATAGTACAACTGTTTGGTA
TGTGCAATTTTTTTGTCACTTCTCTCGGCTGGTATTCATGATATGCATCA
TCGCAATGTCTTCCAGGGACCCAACAGCTGATTGGTTGAAAGTGACGTAT
TGACTGATTTTACGTCACTTACAACCAATCAGCTGTTGGGTCAGTGATGT
AATGTCAGAAGACATTGCAATGGTGCATACCATGTATTCAACCTTTTTTC
GACGTTCATCTAACGTTGGATGGATGTTAGATGGACGTTGTCATCACGTT
TTGTGTCAGCTTTAGGTACTTAGTTAAGGTTTACCATATAAAATTGATAG
AAGCAAGGTTTAAGCATTAGACTATTCTACGCCTGAAACGTACCAACTCA
AGCCTGTATATTCGGTTTGTACGTTGTTTAGAGATAAAGCGTACTGGCTA
CTCTTACGCTTCACCTCGTAAAAAAACATATTTATCATTTAAATTTTTTT
CAATTTTCGGTGCCTCAAAAAATTGCTTGATGTATTTTAGCTGCATATTC
TTATAATATTATCTTTTACATTTTTCTAGTGAGCTCAAAGTCAACGATAC
CTTAATCGAGTCGAATGGTCGTCAACTAGTCGATGAAATATCAGAATGTT
CACAAAAACGACCGAAACTCGTCATCACTACCTTAATCGATCACCCATTT
GTTATTACTACTAAAATGGATATTGATCCATTGGGTGGATATAATTGTCA
ATTCTCGTACCCATGTTCTTTACCCAGGACTGCGTCAAACGGTACAATAG
TCTGGGAACTACATTGCTGTGCTGGCCTTGTTATTGATATTATTATGGAG
ATACAGAAAGAATTGAATTTTGATATGGAGCTGTATGGATGTCCTGATCG
CCAATATGGCTCTATCAAAAATGGTTCCTGGACTGGTATGGTCAACGAGG
TGGCGTCTGGCCGAGCAGATTTAGCTATCCAAGGTTTAACAGTGAATGCT
ATGAGGTCCTCGGTGGTCGATTTTACGACAAGTTTTATGCTAACGTCAAT
CGGAATAGTACGCCGACGTCGTTCGCTACAATTGCCAATCGTGAATTGGG
AATTTATGAAAATGCTAAAATTAGATCTTGTTCTTTGTTTAATCTCATCA
TTTGCTATTGTTTTTGTGATTTTGTTTATTTACGAGAATATTAACCATTA
TTTACGGAAGGACCGGTATTATCCGACTCGTGAAGCATTTTCGTATGTCG
CCGGATTAACTTTCCAACGTGATTTAGCTGGTAAAACACCACATAAATGG
TCAGCTAGAGTTGTTGCTATTGTTTATGCTATTGCTATGACGATTGTCAT
GACAACATATACAGCAAATTTAACAGCCAATAATTTGACGGAAGCCGATA
CCGATGATTTTGCTGGTTTGAAAGACTCAAAGGTAATTTCATTATACACT
TTTTATTAGAAAAATGAACTGATACAATTTTCATGTTTTACTGTTTTATT
TATTCCGAGATTTCATAGTCTTCTTACTGGAGAGCTGAAAAGAGGCTCCT
ATTCCTCAGTGAAATCTAAAATAGGGATATGCTCAAATGGGACCGATTAA
AATCCACCCAAATTTTTGTGTCTTAAATGAATAGTTGTGGAAAGTAACCT
AAATTTCTGTTGTCATTTTCCAGAACTGTACAAACTTATTTCATCAAAAA
TGACGAAATGCTCTGCCACCCTAATCATTGAGTTTAAAGCTAGAGTAGAA
TTTCTAACCTTTCAAGATAACCAGGCAAGAAAAAGTGAAACCACTTATTT
CCTATCCAGAACCGCGCATAAAACGCGCCAAGGGCTGTATTTTTTTAAAT
CTAGCGAAGTGGCTTCATTTCCCATCCAGGAGTCTCAAGTCTAGCCCTTT
GGGCTTGAAAGTCAATGGCCCTAATCTCCTAAGTGAATATAGCTGAACAG
AAAATCTTATTTATTCACATATTACATTTTCAGATTACAAACCCAACACC
AGCGTTCATATATGGTGTACGTAAGGGGACTTTCAACGAGCTTTACTTCA
AAGAGAACATACAACCACGATTGAGTGAAGCATATCAAACATTTATACGT
TATTATCTAACCAAAACCAATAGTGAGGGATTGGAAAATGTGCGGATCGG
GTAGGTTCTTTATATCTTAGCCTAAGGTCTTTTATAATTCGTGTAATACA
ATAATATGAGTGTTATATGAAAAATACTATGATTGTTACGGTATGATATC
AGTTTGTCTAAACACTTCTATAAAGACTACAATTAGTCCCTTCCATTATT
ATTTTCTGATTATTTCCTGAAATTAATTTGTCTGAATCAATTGTTTATCC
TAGCTTCAGGTTCCTGGTATTAATTGTCTTTAGCAGTAAACGAATCTCCT
GTTTCAACACCGAAAAAATATTGTTTAAAACAAAGTCAGCATAACAGACC
ATTTACAGTTGAGCCTCCATAACTCGAACCTATATAACTCGAATGCATCC
TTAACTCGAACAATTTTTCTAATCCCTTCAGTTAACAATGGCTTTTAAAC
CAGTCCGGGGGGGGTACAGACACAGGGTACTAACCCATAGTCAGGTGGGG
GTGTCTATTTTTGCATTTCAAAAAAGTTTGTATTTTTCACTCTTCAAGCA
AGTACAGGATACTATTTGGTTACTTTTTCACAGAATTTTGCTGTTTTTCA
ATAAAAAAAGTAGTTTGTTGTAATATTTTGACTTTTTTCAAATATTAATA
TTTTTGATTTAAATTTTTTTTACTCTTTTGAGAAATTTTTTGATTTTTTT
GAAGACAAAACTTCCAAAATGGTCAAGAAGTGTGTGATGGAAATCAAGGG
ACAAAAGCTTCTGACTCCATCATTGATAGTTTGCTTGAATTATCTGTCAA
TTTTCAGTCTGAAAAACTAACAATAGTACCCCTCTCTTGGTCTAATTTGT
AAAATTTAAGATTTTAGGGGTGGTGTCCCTATTTTTTTACAGCAAAAATG
AAGTAATACCTGGTATTAAATATGGGTGGGTGGTACTAAACAAAATTTTA
ATAAAAAATCAAGTTAGTACCCTATGGGTTATACCCTGCCTCTGTATCCC
CCCTGACCAGTCTTCATAGCTCTGACAATTTGCGTTCCCTGCGGAACGTT
ATTATAGAACGTTCAAGTTATGGAGACTCCACTATGCTAGAATGTTGAAC
GTTTGTGCTCTTTTTTTTCAGGACATTCGACGCATTCGTTGGAGATTACG
TCTATCTTTTATACCGCCTGGTAACACCCAAATACTGTTCCGTTCTTTCC
ATTCACAAAGAATCAAGTCTTGATTTCCCACTAGGATTTGCTGTTCAAAA
AAACTCAAAATGGAATAAACTTATATCTGGCAAAATACGCGAATTACATG
AAAATGGTTTATTAGATCGGATCGTGAATAAATGGTTTTTCTTACCTAAG
TGCTTACAAGATTCTCTACAAGCTTATAAATTCCCTTGGGAATATATTGG
AGGTATGTTGGTTGCAGTTGCTTTTGTTGTGCTAATTAGTATAGCTGTGG
TATGTTTAGAGACTATTTACACCAGACGAAAATCGAAGAAAACTTTTGGT
CATATTGGTTATGAATTTCATGGGATTTTCCGTAAAAAATCGACGGAAGT
TTCTAAAATTGATTTGAATGGACTTCAAACTTCGTTGCCTGTACCAGGTG
TTGTTATTGCGAACTCAAATTGTAAGGATTCGCCGAAACGTAATCGTAAA
GAGTCAAAGATTTCACAGAATTCGACAAAATTAAACGGTGTCGAGTTAAG
AGCTCGAAACGGGACTCAAGAATCAACCGTTCAAATGGACGATTCTGACG
TGAGTGAAGCTTAGCAATTTTCTTTAAGGAATATGATTTTCTGTTAGAAT
AAAATCGAAAATTTTGCGTATAAAAA

Coding sequence (CDS) from alignment at scaffold_15:190392..195117-

>TCONS_00049013 ID=TCONS_00049013|Name=TCONS_00049013|organism=Clytia hemisphaerica|type=CDS|length=9468bp|location=Sequence derived from alignment at scaffold_15:190392..195117- (Clytia hemisphaerica)
GACATTCGACGCATTCGTTGGAGATTACGTCTATCTTTTATACCGCCTGG
TAACACCCAAATACTGTTCCGTTCTTTCCATTCACAAAGAATCAAGTCTT
GATTTCCCACTAGGATTTGCTGTTCAAAAAAACTCAAAATGGAATAAACT
TATATCTGGCAAAATACGCGAATTACATGAAAATGGTTTATTAGATCGGA
TCGTGAATAAATGGTTTTTCTTACCTAAGTGCTTACAAGATTCTCTACAA
GCTTATAAATTCCCTTGGGAATATATTGGAGGTATGTTGGTTGCAGTTGC
TTTTGTTGTGCTAATTAGTATAGCTGTGGTATGTTTAGAGACTATTTACA
CCAGACGAAAATCGAAGAAAACTTTTGGTCATATTGGTTATGAATTTCAT
GGGATTTTCCGTAAAAAATCGACGGAAGTTTCTAAAATTGATTTGAATGG
ACTTCAAACTTCGTTGCCTGTACCAGGTGTTGTTATTGCGAACTCAAATT
GTAAGGATTCGCCGAAACGTAATCGTAAAGAGTCAAAGATTTCACAGAAT
TCGACAAAATTAAACGGTGTCGAGTTAAGAGCTCGAAACGGGACTCAAGA
ATCAACCGTTCAAATGGACGATTCTGACGTGAGTGAAGCTTAGATTACAA
ACCCAACACCAGCGTTCATATATGGTGTACGTAAGGGGACTTTCAACGAG
CTTTACTTCAAAGAGAACATACAACCACGATTGAGTGAAGCATATCAAAC
ATTTATACGTTATTATCTAACCAAAACCAATAGTGAGGGATTGGAAAATG
TGCGGATCGGTGAGCTCAAAGTCAACGATACCTTAATCGAGTCGAATGGT
CGTCAACTAGTCGATGAAATATCAGAATGTTCACAAAAACGACCGAAACT
CGTCATCACTACCTTAATCGATCACCCATTTGTTATTACTACTAAAATGG
ATATTGATCCATTGGGTGGATATAATTGTCAATTCTCGTACCCATGTTCT
TTACCCAGGACTGCGTCAAACGGTACAATAGTCTGGGAACTACATTGCTG
TGCTGGCCTTGTTATTGATATTATTATGGAGATACAGAAAGAATTGAATT
TTGATATGGAGCTGTATGGATGTCCTGATCGCCAATATGGCTCTATCAAA
AATGGTTCCTGGACTGGTATGGTCAACGAGGTGGCGTCTGGCCGAGCAGA
TTTAGCTATCCAAGGTTTAACAGTGAATGCTATGAGGTCCTCGGTGGTCG
ATTTTACGACAAGTTTTATGCTAACGTCAATCGGAATAGTACGCCGACGT
CGTTCGCTACAATTGCCAATCGTGAATTGGGAATTTATGAAAATGCTAAA
ATTAGATCTTGTTCTTTGTTTAATCTCATCATTTGCTATTGTTTTTGTGA
TTTTGTTTATTTACGAGAATATTAACCATTATTTACGGAAGGACCGGTAT
TATCCGACTCGTGAAGCATTTTCGTATGTCGCCGGATTAACTTTCCAACG
TGATTTAGCTGGTAAAACACCACATAAATGGTCAGCTAGAGTTGTTGCTA
TTGTTTATGCTATTGCTATGACGATTGTCATGACAACATATACAGCAAAT
TTAACAGCCAATAATTTGACGGAAGCCGATACCGATGATTTTGCTGGTTT
GAAAGACTCAAAGATGAAGCTTTATAACTTGATTCTATCGCTTTCGTTGA
CGATCACCAAAGTATTTTCCGGCAACCTCACATGTCACCTCGAAGCACTT
CTCTATCCACTGGAGCTAATATCTAAATCAACATTTTCGCCAAAATCATC
CTGGTTAGATCCAGATCAAATGAGGAACATTTATTTCAACCAAACAAATG
ATTCAATCGGTTTGGAACAATGGTTACACAATCAACAACATAACAGCACT
AATAAACAATCAATACAAAATCTTCATACATTCTCATCTGCACTTACCAA
GACTCTAAACTATATACTACAAGAACGAACACAACAAGAGATTTTAATAT
TAACAGACTATCAACCAACCCACCTTTTTCTCAAAACATTGGAGCAACAA
CTTCTAAATCTAAACTATAAGGTTGATTTCAAGACAATAAATAAAGAAAA
CATTCATCAACTCAACACAATAGTGACAGAAATGTTGTCAGCCTCCATAT
CAGTCAATCTCCTTTTACTACCGTGGGATTTAAGCCAGGCTGTTTTAGAT
TCAGCCAAAAGACAATTTTTACTTGATAAAGTTATTTCTAGAACGTGGAT
AACTTTCAATGGAGATCGAATGACTCGAACCGAGAAATGTGTACACGATA
TATCGATTAAATCGTTAGTTCAATCGACTTATGTAATGAAACGAATGGTA
GATAGTACAACTGTTTGGACATTCGACGCATTCGTTGGAGATTACGTCTA
TCTTTTATACCGCCTGGTAACACCCAAATACTGTTCCGTTCTTTCCATTC
ACAAAGAATCAAGTCTTGATTTCCCACTAGGATTTGCTGTTCAAAAAAAC
TCAAAATGGAATAAACTTATATCTGGCAAAATACGCGAATTACATGAAAA
TGGTTTATTAGATCGGATCGTGAATAAATGGTTTTTCTTACCTAAGTGCT
TACAAGATTCTCTACAAGCTTATAAATTCCCTTGGGAATATATTGGAGGT
ATGTTGGTTGCAGTTGCTTTTGTTGTGCTAATTAGTATAGCTGTGGTATG
TTTAGAGACTATTTACACCAGACGAAAATCGAAGAAAACTTTTGGTCATA
TTGGTTATGAATTTCATGGGATTTTCCGTAAAAAATCGACGGAAGTTTCT
AAAATTGATTTGAATGGACTTCAAACTTCGTTGCCTGTACCAGGTGTTGT
TATTGCGAACTCAAATTGTAAGGATTCGCCGAAACGTAATCGTAAAGAGT
CAAAGATTTCACAGAATTCGACAAAATTAAACGGTGTCGAGTTAAGAGCT
CGAAACGGGACTCAAGAATCAACCGTTCAAATGGACGATTCTGACGTGAG
TGAAGCTTAGATTACAAACCCAACACCAGCGTTCATATATGGTGTACGTA
AGGGGACTTTCAACGAGCTTTACTTCAAAGAGAACATACAACCACGATTG
AGTGAAGCATATCAAACATTTATACGTTATTATCTAACCAAAACCAATAG
TGAGGGATTGGAAAATGTGCGGATCGGTGAGCTCAAAGTCAACGATACCT
TAATCGAGTCGAATGGTCGTCAACTAGTCGATGAAATATCAGAATGTTCA
CAAAAACGACCGAAACTCGTCATCACTACCTTAATCGATCACCCATTTGT
TATTACTACTAAAATGGATATTGATCCATTGGGTGGATATAATTGTCAAT
TCTCGTACCCATGTTCTTTACCCAGGACTGCGTCAAACGGTACAATAGTC
TGGGAACTACATTGCTGTGCTGGCCTTGTTATTGATATTATTATGGAGAT
ACAGAAAGAATTGAATTTTGATATGGAGCTGTATGGATGTCCTGATCGCC
AATATGGCTCTATCAAAAATGGTTCCTGGACTGGTATGGTCAACGAGGTG
GCGTCTGGCCGAGCAGATTTAGCTATCCAAGGTTTAACAGTGAATGCTAT
GAGGTCCTCGGTGGTCGATTTTACGACAAGTTTTATGCTAACGTCAATCG
GAATAGTACGCCGACGTCGTTCGCTACAATTGCCAATCGTGAATTGGGAA
TTTATGAAAATGCTAAAATTAGATCTTGTTCTTTGTTTAATCTCATCATT
TGCTATTGTTTTTGTGATTTTGTTTATTTACGAGAATATTAACCATTATT
TACGGAAGGACCGGTATTATCCGACTCGTGAAGCATTTTCGTATGTCGCC
GGATTAACTTTCCAACGTGATTTAGCTGGTAAAACACCACATAAATGGTC
AGCTAGAGTTGTTGCTATTGTTTATGCTATTGCTATGACGATTGTCATGA
CAACATATACAGCAAATTTAACAGCCAATAATTTGACGGAAGCCGATACC
GATGATTTTGCTGGTTTGAAAGACTCAAAGATGAAGCTTTATAACTTGAT
TCTATCGCTTTCGTTGACGATCACCAAAGTATTTTCCGGCAACCTCACAT
GTCACCTCGAAGCACTTCTCTATCCACTGGAGCTAATATCTAAATCAACA
TTTTCGCCAAAATCATCCTGGTTAGATCCAGATCAAATGAGGAACATTTA
TTTCAACCAAACAAATGATTCAATCGGTTTGGAACAATGGTTACACAATC
AACAACATAACAGCACTAATAAACAATCAATACAAAATCTTCATACATTC
TCATCTGCACTTACCAAGACTCTAAACTATATACTACAAGAACGAACACA
ACAAGAGATTTTAATATTAACAGACTATCAACCAACCCACCTTTTTCTCA
AAACATTGGAGCAACAACTTCTAAATCTAAACTATAAGGTTGATTTCAAG
ACAATAAATAAAGAAAACATTCATCAACTCAACACAATAGTGACAGAAAT
GTTGTCAGCCTCCATATCAGTCAATCTCCTTTTACTACCGTGGGATTTAA
GCCAGGCTGTTTTAGATTCAGCCAAAAGACAATTTTTACTTGATAAAGTT
ATTTCTAGAACGTGGATAACTTTCAATGGAGATCGAATGACTCGAACCGA
GAAATGTGTACACGATATATCGATTAAATCGTTAGTTCAATCGACTTATG
TAATGAAACGAATGGTAGATAGTACAACTGTTTGGACATTCGACGCATTC
GTTGGAGATTACGTCTATCTTTTATACCGCCTGGTAACACCCAAATACTG
TTCCGTTCTTTCCATTCACAAAGAATCAAGTCTTGATTTCCCACTAGGAT
TTGCTGTTCAAAAAAACTCAAAATGGAATAAACTTATATCTGGCAAAATA
CGCGAATTACATGAAAATGGTTTATTAGATCGGATCGTGAATAAATGGTT
TTTCTTACCTAAGTGCTTACAAGATTCTCTACAAGCTTATAAATTCCCTT
GGGAATATATTGGAGGTATGTTGGTTGCAGTTGCTTTTGTTGTGCTAATT
AGTATAGCTGTGGTATGTTTAGAGACTATTTACACCAGACGAAAATCGAA
GAAAACTTTTGGTCATATTGGTTATGAATTTCATGGGATTTTCCGTAAAA
AATCGACGGAAGTTTCTAAAATTGATTTGAATGGACTTCAAACTTCGTTG
CCTGTACCAGGTGTTGTTATTGCGAACTCAAATTGTAAGGATTCGCCGAA
ACGTAATCGTAAAGAGTCAAAGATTTCACAGAATTCGACAAAATTAAACG
GTGTCGAGTTAAGAGCTCGAAACGGGACTCAAGAATCAACCGTTCAAATG
GACGATTCTGACGTGAGTGAAGCTTAGATTACAAACCCAACACCAGCGTT
CATATATGGTGTACGTAAGGGGACTTTCAACGAGCTTTACTTCAAAGAGA
ACATACAACCACGATTGAGTGAAGCATATCAAACATTTATACGTTATTAT
CTAACCAAAACCAATAGTGAGGGATTGGAAAATGTGCGGATCGGTGAGCT
CAAAGTCAACGATACCTTAATCGAGTCGAATGGTCGTCAACTAGTCGATG
AAATATCAGAATGTTCACAAAAACGACCGAAACTCGTCATCACTACCTTA
ATCGATCACCCATTTGTTATTACTACTAAAATGGATATTGATCCATTGGG
TGGATATAATTGTCAATTCTCGTACCCATGTTCTTTACCCAGGACTGCGT
CAAACGGTACAATAGTCTGGGAACTACATTGCTGTGCTGGCCTTGTTATT
GATATTATTATGGAGATACAGAAAGAATTGAATTTTGATATGGAGCTGTA
TGGATGTCCTGATCGCCAATATGGCTCTATCAAAAATGGTTCCTGGACTG
GTATGGTCAACGAGGTGGCGTCTGGCCGAGCAGATTTAGCTATCCAAGGT
TTAACAGTGAATGCTATGAGGTCCTCGGTGGTCGATTTTACGACAAGTTT
TATGCTAACGTCAATCGGAATAGTACGCCGACGTCGTTCGCTACAATTGC
CAATCGTGAATTGGGAATTTATGAAAATGCTAAAATTAGATCTTGTTCTT
TGTTTAATCTCATCATTTGCTATTGTTTTTGTGATTTTGTTTATTTACGA
GAATATTAACCATTATTTACGGAAGGACCGGTATTATCCGACTCGTGAAG
CATTTTCGTATGTCGCCGGATTAACTTTCCAACGTGATTTAGCTGGTAAA
ACACCACATAAATGGTCAGCTAGAGTTGTTGCTATTGTTTATGCTATTGC
TATGACGATTGTCATGACAACATATACAGCAAATTTAACAGCCAATAATT
TGACGGAAGCCGATACCGATGATTTTGCTGGTTTGAAAGACTCAAAGATG
AAGCTTTATAACTTGATTCTATCGCTTTCGTTGACGATCACCAAAGTATT
TTCCGGCAACCTCACATGTCACCTCGAAGCACTTCTCTATCCACTGGAGC
TAATATCTAAATCAACATTTTCGCCAAAATCATCCTGGTTAGATCCAGAT
CAAATGAGGAACATTTATTTCAACCAAACAAATGATTCAATCGGTTTGGA
ACAATGGTTACACAATCAACAACATAACAGCACTAATAAACAATCAATAC
AAAATCTTCATACATTCTCATCTGCACTTACCAAGACTCTAAACTATATA
CTACAAGAACGAACACAACAAGAGATTTTAATATTAACAGACTATCAACC
AACCCACCTTTTTCTCAAAACATTGGAGCAACAACTTCTAAATCTAAACT
ATAAGGTTGATTTCAAGACAATAAATAAAGAAAACATTCATCAACTCAAC
ACAATAGTGACAGAAATGTTGTCAGCCTCCATATCAGTCAATCTCCTTTT
ACTACCGTGGGATTTAAGCCAGGCTGTTTTAGATTCAGCCAAAAGACAAT
TTTTACTTGATAAAGTTATTTCTAGAACGTGGATAACTTTCAATGGAGAT
CGAATGACTCGAACCGAGAAATGTGTACACGATATATCGATTAAATCGTT
AGTTCAATCGACTTATGTAATGAAACGAATGGTAGATAGTACAACTGTTT
GGACATTCGACGCATTCGTTGGAGATTACGTCTATCTTTTATACCGCCTG
GTAACACCCAAATACTGTTCCGTTCTTTCCATTCACAAAGAATCAAGTCT
TGATTTCCCACTAGGATTTGCTGTTCAAAAAAACTCAAAATGGAATAAAC
TTATATCTGGCAAAATACGCGAATTACATGAAAATGGTTTATTAGATCGG
ATCGTGAATAAATGGTTTTTCTTACCTAAGTGCTTACAAGATTCTCTACA
AGCTTATAAATTCCCTTGGGAATATATTGGAGGTATGTTGGTTGCAGTTG
CTTTTGTTGTGCTAATTAGTATAGCTGTGGTATGTTTAGAGACTATTTAC
ACCAGACGAAAATCGAAGAAAACTTTTGGTCATATTGGTTATGAATTTCA
TGGGATTTTCCGTAAAAAATCGACGGAAGTTTCTAAAATTGATTTGAATG
GACTTCAAACTTCGTTGCCTGTACCAGGTGTTGTTATTGCGAACTCAAAT
TGTAAGGATTCGCCGAAACGTAATCGTAAAGAGTCAAAGATTTCACAGAA
TTCGACAAAATTAAACGGTGTCGAGTTAAGAGCTCGAAACGGGACTCAAG
AATCAACCGTTCAAATGGACGATTCTGACGTGAGTGAAGCTTAGATTACA
AACCCAACACCAGCGTTCATATATGGTGTACGTAAGGGGACTTTCAACGA
GCTTTACTTCAAAGAGAACATACAACCACGATTGAGTGAAGCATATCAAA
CATTTATACGTTATTATCTAACCAAAACCAATAGTGAGGGATTGGAAAAT
GTGCGGATCGGTGAGCTCAAAGTCAACGATACCTTAATCGAGTCGAATGG
TCGTCAACTAGTCGATGAAATATCAGAATGTTCACAAAAACGACCGAAAC
TCGTCATCACTACCTTAATCGATCACCCATTTGTTATTACTACTAAAATG
GATATTGATCCATTGGGTGGATATAATTGTCAATTCTCGTACCCATGTTC
TTTACCCAGGACTGCGTCAAACGGTACAATAGTCTGGGAACTACATTGCT
GTGCTGGCCTTGTTATTGATATTATTATGGAGATACAGAAAGAATTGAAT
TTTGATATGGAGCTGTATGGATGTCCTGATCGCCAATATGGCTCTATCAA
AAATGGTTCCTGGACTGGTATGGTCAACGAGGTGGCGTCTGGCCGAGCAG
ATTTAGCTATCCAAGGTTTAACAGTGAATGCTATGAGGTCCTCGGTGGTC
GATTTTACGACAAGTTTTATGCTAACGTCAATCGGAATAGTACGCCGACG
TCGTTCGCTACAATTGCCAATCGTGAATTGGGAATTTATGAAAATGCTAA
AATTAGATCTTGTTCTTTGTTTAATCTCATCATTTGCTATTGTTTTTGTG
ATTTTGTTTATTTACGAGAATATTAACCATTATTTACGGAAGGACCGGTA
TTATCCGACTCGTGAAGCATTTTCGTATGTCGCCGGATTAACTTTCCAAC
GTGATTTAGCTGGTAAAACACCACATAAATGGTCAGCTAGAGTTGTTGCT
ATTGTTTATGCTATTGCTATGACGATTGTCATGACAACATATACAGCAAA
TTTAACAGCCAATAATTTGACGGAAGCCGATACCGATGATTTTGCTGGTT
TGAAAGACTCAAAGATGAAGCTTTATAACTTGATTCTATCGCTTTCGTTG
ACGATCACCAAAGTATTTTCCGGCAACCTCACATGTCACCTCGAAGCACT
TCTCTATCCACTGGAGCTAATATCTAAATCAACATTTTCGCCAAAATCAT
CCTGGTTAGATCCAGATCAAATGAGGAACATTTATTTCAACCAAACAAAT
GATTCAATCGGTTTGGAACAATGGTTACACAATCAACAACATAACAGCAC
TAATAAACAATCAATACAAAATCTTCATACATTCTCATCTGCACTTACCA
AGACTCTAAACTATATACTACAAGAACGAACACAACAAGAGATTTTAATA
TTAACAGACTATCAACCAACCCACCTTTTTCTCAAAACATTGGAGCAACA
ACTTCTAAATCTAAACTATAAGGTTGATTTCAAGACAATAAATAAAGAAA
ACATTCATCAACTCAACACAATAGTGACAGAAATGTTGTCAGCCTCCATA
TCAGTCAATCTCCTTTTACTACCGTGGGATTTAAGCCAGGCTGTTTTAGA
TTCAGCCAAAAGACAATTTTTACTTGATAAAGTTATTTCTAGAACGTGGA
TAACTTTCAATGGAGATCGAATGACTCGAACCGAGAAATGTGTACACGAT
ATATCGATTAAATCGTTAGTTCAATCGACTTATGTAATGAAACGAATGGT
AGATAGTACAACTGTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031135XLOC_031135Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049013-exon-scaffold_15-1575043694:194271..195117TCONS_00049013-exon-scaffold_15-1575043694:194271..195117Clytia hemisphaericaexon
TCONS_00049013-exon-scaffold_15-1575043694:192886..193738TCONS_00049013-exon-scaffold_15-1575043694:192886..193738Clytia hemisphaericaexon
TCONS_00049013-exon-scaffold_15-1575043694:192168..192334TCONS_00049013-exon-scaffold_15-1575043694:192168..192334Clytia hemisphaericaexon
TCONS_00049013-exon-scaffold_15-1575043694:190392..191096TCONS_00049013-exon-scaffold_15-1575043694:190392..191096Clytia hemisphaericaexon
TCONS_00049013-exon-scaffold_15-1510915933:194271..195117TCONS_00049013-exon-scaffold_15-1510915933:194271..195117Clytia hemisphaericaexon
TCONS_00049013-exon-scaffold_15-1510915933:192886..193738TCONS_00049013-exon-scaffold_15-1510915933:192886..193738Clytia hemisphaericaexon
TCONS_00049013-exon-scaffold_15-1510915933:192168..192334TCONS_00049013-exon-scaffold_15-1510915933:192168..192334Clytia hemisphaericaexon
TCONS_00049013-exon-scaffold_15-1510915933:190392..191096TCONS_00049013-exon-scaffold_15-1510915933:190392..191096Clytia hemisphaericaexon
TCONS_00049013-exon-scaffold_15-1491911889:194271..195117TCONS_00049013-exon-scaffold_15-1491911889:194271..195117Clytia hemisphaericaexon
TCONS_00049013-exon-scaffold_15-1491911889:192886..193738TCONS_00049013-exon-scaffold_15-1491911889:192886..193738Clytia hemisphaericaexon
TCONS_00049013-exon-scaffold_15-1491911889:192168..192334TCONS_00049013-exon-scaffold_15-1491911889:192168..192334Clytia hemisphaericaexon
TCONS_00049013-exon-scaffold_15-1491911889:190392..191096TCONS_00049013-exon-scaffold_15-1491911889:190392..191096Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049013-proteinTCONS_00049013-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:190392..195117 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.135125	0.190331	0.135996	0.0166313	0.101235	0.0319989	0.21233	0.19878	0.341601	0.188057	0.106477	0.34997	1.27811	0.92291	0.0255761	0.0640431	0.462105	0.519851	3.47929	3.62413	1.43711	1.40194	0.430365	0.84513	0.854345	1.05021	0.102935	0.21971	0.083321	0.0509346
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001320Iontro_rcpt
IPR019594Glu/Gly-bd
Vocabulary: Molecular Function
TermDefinition
GO:0004970ionotropic glutamate receptor activity
GO:0005234extracellular-glutamate-gated ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0005234 extracellular-glutamate-gated ion channel activity
molecular_function GO:0004970 ionotropic glutamate receptor activity
Blast
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BLAST of TCONS_00049013 vs. Swiss-Prot (Human)
Match: NMD3A (Glutamate receptor ionotropic, NMDA 3A OS=Homo sapiens GN=GRIN3A PE=1 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 8.693e-42
Identity = 129/455 (28.35%), Postives = 219/455 (48.13%), Query Frame = 3 
Query:  936 LVITTLIDHPFVITTKMDIDPLGGYNCQFSYPCSLPRT--------------ASNGTIVWELH-CCAGLVIDIIMEIQKELNFDMELYGCPDRQYGSIKNGSWTGMVNEVASGRADLAIQGLTVNAMRSSVVDFTTSFMLTSIGIVRRRRSLQLPIVNWEFMKMLKLDLVLCLISSFAIVFVILFIYENINHYLRKDRYYPTREAFSYVAGLT------FQRDLAGKTPHKWSARVVAIVYAIAMTIVMXXXXXXXXXXXXXXXXXDDFAGLKDSKITNPTPAFIYGVRKGTFNELYFKENIQPRLSEAYQTFIRYYLTKTNSEGLENVR--IGTFDAFVGDYVYLLYRLVTPKYCSVLSIHKESSLDFPLGFAVQKNSKWNKLISGKIRELHENGLLDRIVNKWFFLPKCLQDSL---QAYKFPWEYIGGMLVAVAFVVLISIAVVCLETIYTR 2222
            L + TLI+HPFV T ++D + L    C     C  P T              +SN T+  +   CC G  ID++ +I +++NFD +LY   D +YG+ KNG WTG+V ++  G A +A+   ++N  RS V+DFT+ F  TS+GI+ R R    PI    FM  L   + L +  +  I  V L +YE  + +    +     + FS+ + L       F R +A K P  W+ R +  ++AI     ++TYTANL A  + E   ++ +G+ D K+ +P+  F +G  + +  E Y +++  P + E    ++R Y      +G+E ++      DAF+ D   L Y +     C +L++ K  +++   G  +  NS     IS  I +   +G +D + +KW+ +  C + S    +  +   ++  G+ V +     +SI     E I  R
Sbjct:  515 LRVVTLIEHPFVFTREVDDEGL----CPAGQLCLDPMTNDSSTLDSLFSSLHSSNDTVPIKFKKCCYGYCIDLLEKIAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLRGTAHMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRDTAAPIG--AFMWPLHWTMWLGIFVALHITAVFLTLYEWKSPFGLTPKGRNRSKVFSFSSALNICYALLFGRTVAIKPPKCWTGRFLMNLWAIFCMFCLSTYTANLAAVMVGEKIYEELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSF-PEMHE----YMRRYNVPATPDGVEYLKNDPEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEG-YGIGLPPNSPLTANISELISQYKSHGFMDMLHDKWYRVVPCGKRSFAVTETLQMGIKHFSGLFVLLCIGFGLSILTTIGEHIVYR 957
The following BLAST results are available for this feature:
BLAST of TCONS_00049013 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NMD3A8.693e-4228.35Glutamate receptor ionotropic, NMDA 3A OS=Homo sap... [more]
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