TCONS_00047744-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00047744-protein
Unique NameTCONS_00047744-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length644

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00047744-protein ID=TCONS_00047744-protein|Name=TCONS_00047744-protein|organism=Clytia hemisphaerica|type=polypeptide|length=644bp
LIVSSLKRVTSATQSIFHCPCFYHLKLMNERDSISASRLQLSSTLLLFIL
SVKHSLHIFKTMSHSSMYDNLLGQGVNPSLAAKLDEIHQQGLLQVDELDD
RALEALKEFTEEDALNVLGQFMKSDLTHVQNKSAFLCGVMKTYRAKMKLK
SEEAATNPSASTSVTPQQQQQTEDGKKGPNEDKVKQLLNRTGYTLDITTG
QRKYGGPPPGWEGPAPGTGEKKFCSQVFIGKIPRDMYEDELVPLFEPYGQ
IYDLRIMVDPFSGLNKGYAFVTYSTKEGAQSSVKAMENHEVRGGKKLGVC
LSQANNRLFVGSIPKTKTKQDIMEEFKTKVEELTDVIMYFSAEDKNKNRG
FAFLDFATHKDAAQARRKLQSGRIKVFGHITPAVDWADSMDEPNDEVMSK
VKVVYVRHLSPAIDENKLNELFEQYGPVEKVKKIKDYAFINFANRDDAMR
AIEELDNQELDDLKISVQLAKPQVDKTGQRRGQSGFGALNKKGESDNFVP
RGRGGFSGRGAGGPRGRGRGGFGGGFSHGGNYSQGGYRGGTYGQQRGGMN
RGRGGFGRGGSDYGSGRGGSRGGTGGYGSRGRGAGAPKRKADYGGDYGTP
SKRKNEWNSQPIAQQPLGNSSSNYYNDDYSGGDWYTDLSEPRWQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030403XLOC_030403Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00047744TCONS_00047744Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR006535HnRNP_R/Q_splicing_fac
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 307..385
e-value: 6.1E-10
score: 49.0
coord: 403..468
e-value: 1.2E-18
score: 78.0
coord: 226..300
e-value: 1.9E-18
score: 77.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 227..293
e-value: 2.2E-15
score: 56.1
coord: 308..372
e-value: 3.9E-8
score: 32.9
coord: 404..465
e-value: 2.2E-14
score: 52.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 225..304
score: 17.643
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 402..472
score: 17.063
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 306..389
score: 12.901
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 392..495
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 226..371
NoneNo IPR availableGENE3D3.30.70.330coord: 304..391
e-value: 2.3E-11
score: 43.2
coord: 130..303
e-value: 1.3E-20
score: 73.2
NoneNo IPR availableGENE3D3.30.70.330coord: 392..478
e-value: 2.4E-21
score: 75.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 198..217
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 474..644
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 151..183
NoneNo IPR availableCDDcd12250RRM2_hnRNPR_likecoord: 305..387
e-value: 1.6452E-38
score: 135.867
NoneNo IPR availableCDDcd12249RRM1_hnRNPR_likecoord: 224..302
e-value: 6.86706E-36
score: 128.831
NoneNo IPR availableCDDcd12251RRM3_hnRNPR_likecoord: 401..472
e-value: 5.61965E-30
score: 112.333
IPR006535HnRNP R/Q splicing factorTIGRFAMTIGR01648TIGR01648coord: 168..488
e-value: 3.6E-124
score: 413.6

Blast
[Close]
BLAST of TCONS_00047744-protein vs. Swiss-Prot (Human)
Match: HNRPQ (Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens GN=SYNCRIP PE=1 SV=2)

HSP 1 Score: 458.373 bits (1178), Expect = 3.251e-154
Identity = 227/422 (53.79%), Postives = 300/422 (71.09%), Query Frame = 0 
Query:   64 HSSMYDNLLGQGVNPSLAAKLDEIHQQGLLQVDELDDRALEALKEFTEEDALNVLGQFMKSDLTHVQNKSAFLCGVMKTYRAKMKLKSEEAATNPSASTSVTPQQQQQTEDGKKGPNEDKVKQLLNRTGYTLDITTGQRKYGGPPPG--WEGPAPGTGEKKFCSQVFIGKIPRDMYEDELVPLFEPYGQIYDLRIMVDPFSGLNKGYAFVTYSTKEGAQSSVKAMENHEVRGGKKLGVCLSQANNRLFVGSIPKTKTKQDIMEEFKTKVEELTDVIMYFSAEDKNKNRGFAFLDFATHKDAAQARRKLQSGRIKVFGHITPAVDWADSMDEPNDEVMSKVKVVYVRHLSPAIDENKLNELFEQYGPVEKVKKIKDYAFINFANRDDAMRAIEELDNQELDDLKISVQLAKPQVDKTGQRRGQ 483
            HS  +  LL  G+   +A KLDEI+  GL+   +LD+RA+EALKEF E+ AL VL QF  SDL+HVQNKSAFLCGVMKTYR + K                   Q  +  D  KGP+E K+K LL RTGYTLD+TTGQRKYGGPPP   + G  P  G     +++F+GKIPRD++EDELVPLFE  G I+DLR+M+DP +GLN+GYAFVT+ TKE AQ +VK   NHE+R GK +GVC+S ANNRLFVGSIPK+KTK+ I+EEF    E LTDVI+Y   +DK KNRGF FL++  HK AAQARR+L SG++KV+G++   V+WAD +++P+ EVM+KVKV++VR+L+  + E  L + F Q+G +E+VKK+KDYAFI+F  RD A++A+EE++ ++L+   I +  AKP   K  +R+ Q
Sbjct:   23 HSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDERAIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREK-------------------QGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVG-----TEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVG-TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQ 419
The following BLAST results are available for this feature:
BLAST of TCONS_00047744-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HNRPQ3.251e-15453.79Heterogeneous nuclear ribonucleoprotein Q OS=Homo ... [more]
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