PDZ-domain protein inturned (polypeptide) - C. hemisphaerica

Overview
NamePDZ-domain protein inturned
Unique NameTCONS_00047254-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length908

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00047254-protein ID=TCONS_00047254-protein|Name=PDZ-domain protein inturned|organism=Clytia hemisphaerica|type=polypeptide|length=908bp
MSVGTGNRYLWRENSQSYDGSYYSDNTSLQSQEHYYDGSYNSENNFFYSG
ERRHSNFGDMIERSDSYCSTCPSEDYHTDSEDEDAAQKWPWISHIQDNGD
LIYVHTHHQHKHSHPRNHNHNHSNSNHHKPRTKSFLHKDNKEKGLQGKLK
NVIKKSRSFTKKDVIDKNIDISHFKNSEKKKQQNPLTDTTTEIQTITTDG
VHLLCKNVLIHLNDKVQESFANLENVIGVISGLDLDPVLDDFSDNILMNG
NSTRYNSNCIVVQGIIPNSPAGESEINIGDIILAINGIKVNLQSVNSIVE
KINGTQEIVLTIERLATVVEPEKPSELCSIVSNTLDEGAKEDVFHAYHDT
CMVSLLTLNSNEDDVDGDILFWYPDSEKSKILRNTRGIFLTLSDMLTDVM
AEHIQSSVLYTNKETINVAYKKCGGNVLVVAAPDHKCDLNTLISCTDDFA
KLLTILNGDLNRAFTDENMESTRHETSLFLDLLLQRKPVVPFGTVRQLQL
PTKQMIEISNVVSDVEAADYGECVDDFFPHQRLYGTIGTCLFYKDNLVCS
HLTDENLQDVVTFCKYHWLFMLAKSEKMKQLVLWKEIFLTEKSGESPATK
NSYETPENARWFILVVGQGHSLFCTLLETGGAASIPEGNPGPHPYYVDTA
WSILTYLIENMDYETSSHSRLEGPSIPAVVHATEAINPKTSASPRAIELI
KRKVPIQRRPHHDHLSISHSISNESDLGMRERSQSRTSNLSGNSSNRHYS
VHEMAPHFKQLSMASTSEVSTTAALATKLPTGSHNTLFYFTVLSNRNGVF
VSPNAFKSSNMLTGEILTNYTSACEKIHKWFEKKQLLPSEPLELGVLFHL
QLTKGAEMKKGFPNIRYWVVGRKMKKRNKCEEVYVCFQDGTPQNVIEMAF
KIRFGCHY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030096XLOC_030096Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00047254TCONS_00047254Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001478PDZ domainSMARTSM00228pdz_newcoord: 224..316
e-value: 1.6E-7
score: 41.0
IPR001478PDZ domainPFAMPF00595PDZcoord: 256..312
e-value: 4.0E-7
score: 30.2
IPR001478PDZ domainPROSITEPS50106PDZcoord: 260..314
score: 9.752
IPR001478PDZ domainSUPERFAMILY50156PDZ domain-likecoord: 256..314
NoneNo IPR availableGENE3D2.30.42.10coord: 102..317
e-value: 3.7E-12
score: 45.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 708..745
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..133
NoneNo IPR availableCDDcd00988PDZ_CTP_proteasecoord: 250..314
e-value: 1.75413E-12
score: 63.784

Blast
[Close]
BLAST of PDZ-domain protein inturned vs. Swiss-Prot (Human)
Match: INTU (Protein inturned OS=Homo sapiens GN=INTU PE=1 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 7.503e-59
Identity = 174/608 (28.62%), Postives = 281/608 (46.22%), Query Frame = 0 
Query:   91 WISHIQDNGDLIYVHTHHQHKHSH-PRNHNHNHSNSNHHKPRTKSFLHKDNKE-KGLQGKLKNVIKKSRSFTKKDVIDKNIDISHFKNSEKKKQQNPLTDTTTEIQTITTDGVHLLCKNVLIHLNDK------VQESFANLENVIGVISGLDLDPVLDDFSDNILMNGNSTRYNSNCIVVQGIIPNSPAGES-EINIGDIILAINGIKVNLQSVNSIVEKINGTQEIVLTIERLATVVEPEKPSELCSIVSNTLD----------EGAKEDVFHAYHDTCMVSLLTLNSNEDDVDGDILFWYPDSEKSKILRNTRGIFLTLSDMLTDVMAEHIQSSVLYTNKETINVAYKKCGGNVLVVAAPDHKCDLNTLISCTDDFAKLLTILNGDLNRAFTD-ENMESTRHETSLFLDLLLQRKPVVPFGT-------------------VRQLQLPTKQMIEISNVVSDVEAADYGECVDDFFPHQRLYGTIGTCLFYKDNLVCSHLTDENLQDVVTFCKYHWLFMLAKSEKMKQLVLWKEIFLTEKSGESPATKNSYET-PE-NARWFILVVGQGHSLFCTLLETGGAASIPEGNPGPHPYYVDTAWSILTYL 657
            W+  +Q NG+L Y+      + S  P     NH   + ++      +  D KE K  + KLK   K  R   +K ++ K        N +      P++    +    T   V    K+V +++N K       +E    LE ++G+I                       + +   +VV G++P   A +S ++ IGD+++A+N + V  +++  ++  I G  ++ LT E    V             SNT D          EG ++   +  H   M   L L+S     + +IL+ YP SE S+ L++ RGIFLTL DML +V    + SS L  N + I+VAY K    +L++  P  +  L  L +  ++  + L  + G L+ AF   EN+    H  +LF    LQ   +    +                   VR L LP +  +E+   +SD+EAAD+ E  +D++  +RLY  +G+ LFYK  L+CSHL  ++L D+  +C+++ L  LA  +++ QL++W+E+F   +    P   +S E  PE   R+F+LVVG  H + C LLE GG AS   G+PGP   YVD   + L  L
Sbjct:   55 WLDSVQKNGELFYLELSEDEEESLLPETPTVNHVRFSENE----IIIEDDYKERKKYEPKLKQFTKILR---RKRLLPKRC------NKKNSNDNGPVSILKHQSNQKTGVIVQQRYKDVNVYVNPKKLTVIKAKEQLKLLEVLVGIIHQTKWS-----------WRRTGKQGDGERLVVHGLLPGGSAMKSGQVLIGDVLVAVNDVDVTTENIERVLSCIPGPMQVKLTFENAYDVKRETSHPRQKKTQSNTSDLVKLLWGEEVEGIQQSGLNTPH-IIMYLTLQLDSETSKEEQEILYHYPMSEASQKLKSVRGIFLTLCDMLENVTGTQVTSSSLLLNGKQIHVAYWKESDKLLLIGLPAEEVPLPRLRNMIENVIQTLKFMYGSLDSAFCQIENVPRLDHFFNLFFQRALQPAKLHSSASPSAQQYDASSAVLLDNLPGVRWLTLPLEIKMELDMALSDLEAADFAELSEDYYDMRRLYTILGSSLFYKGYLICSHLPKDDLIDIAVYCRHYCLLPLAAKQRIGQLIIWREVF--PQHHLRPLADSSTEVFPEPEGRYFLLVVGLKHYMLCVLLEAGGCASKAIGSPGPDCVYVDQVKTTLHQL 635
The following BLAST results are available for this feature:
BLAST of PDZ-domain protein inturned vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
INTU7.503e-5928.62Protein inturned OS=Homo sapiens GN=INTU PE=1 SV=2[more]
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