TCONS_00046239-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046239-protein
Unique NameTCONS_00046239-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length469

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046239-protein ID=TCONS_00046239-protein|Name=TCONS_00046239-protein|organism=Clytia hemisphaerica|type=polypeptide|length=469bp
MGAGASNMFSQNPMKKNYPIEDVPTFKIVLVGDSNAGKTSIFLRYTREQF
DYSYQPTMNVNIGNVTKKVQFPFETLVSVSLWDLPGREEIDLRRSYYKDI
DAAIVVVDLSDDGSLEMAGTWKQDINNNSTLTTADNNGNEKARRKSVASQ
AQVPILLIGNKLDKVSSVMDVDDEDQDLNEHSDNEKVVALEEIALQHSFV
GSVAVSACECDGGVHAAFRSLLRFLLHKKAPKKVKDRERSEGNGNHLISI
FSDPNQHGAFTRNMGSVDDHVYEPLKITRIPEIDQIVEAADKNVRTVEFT
SVGLLVAVKNFKKSCCVSGITDNNKSSIEECVTSLKDSLRNGKEEDVLLA
SEEAGYIKLSIPDDAEVPGTLKRVLNIYDKEVCKKTRKVLSQCPTLKVQL
YDQVKELERESETLLDKGSSVGLNKKQLRVAVQSMEDNIEKIKDTIALAD
EAMRITDDQFKRIKNAMMW
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029533XLOC_029533Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046239TCONS_00046239Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 397..417
NoneNo IPR availableCOILSCoilCoilcoord: 425..452
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 49..65
score: 22.56
coord: 151..164
score: 45.41
coord: 26..47
score: 41.39
coord: 70..92
score: 21.08
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 26..228
e-value: 1.2E-7
score: -14.2
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 23..228
e-value: 3.8E-5
score: -34.4
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 28..228
e-value: 1.7E-4
score: -59.8
NoneNo IPR availableGENE3D3.30.70.1390coord: 24..93
e-value: 1.1E-13
score: 50.4
NoneNo IPR availableGENE3D3.40.50.300coord: 94..225
e-value: 2.3E-13
score: 49.4
NoneNo IPR availablePROSITEPS51419RABcoord: 20..263
score: 15.439
NoneNo IPR availableCDDcd00154Rabcoord: 26..166
e-value: 2.77282E-25
score: 100.223
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 27..185
e-value: 1.0E-20
score: 73.8
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 25..110
e-value: 4.8E-12
score: 43.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 25..227

Blast
[Close]
BLAST of TCONS_00046239-protein vs. Swiss-Prot (Human)
Match: RAB7L (Ras-related protein Rab-7L1 OS=Homo sapiens GN=RAB29 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.850e-16
Identity = 44/139 (31.65%), Postives = 75/139 (53.96%), Query Frame = 0 
Query:   26 FKIVLVGDSNAGKTSIFLRYTREQFDYSYQPTMNVNIGNVTKKVQFPFETLVSVSLWDLPGREEI-DLRRSYYKDIDAAIVVVDLSDDGSLEMAGTWKQDINNNSTLTTADNNGNEKARRKSVASQAQVPILLIGNKLD 163
            FK+++VGD+  GKTS+  RY+++ F   Y+ T+ V+     K +Q+    +V + LWD+ G+E    + R YY+D  A +++ D+++  +   +  WKQD+++  TL     NG              VP LL+ NK D
Sbjct:    8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFA--LKVLQWSDYEIVRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLP----NGEP------------VPCLLLANKCD 128
The following BLAST results are available for this feature:
BLAST of TCONS_00046239-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB7L1.850e-1631.65Ras-related protein Rab-7L1 OS=Homo sapiens GN=RAB... [more]
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