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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046239 ID=TCONS_00046239|Name=TCONS_00046239|organism=Clytia hemisphaerica|type=transcript|length=1678bpRun BLAST on NCBI protein sequence of TCONS_00046239-protein >TCONS_00046239-protein ID=TCONS_00046239-protein|Name=TCONS_00046239-protein|organism=Clytia hemisphaerica|type=polypeptide|length=469bp MGAGASNMFSQNPMKKNYPIEDVPTFKIVLVGDSNAGKTSIFLRYTREQFRun BLAST on NCBI transcript from alignment at scaffold_108:152379..165186+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046239 ID=TCONS_00046239|Name=TCONS_00046239|organism=Clytia hemisphaerica|type=transcript|length=12808bp|location=Sequence derived from alignment at scaffold_108:152379..165186+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_108:152379..165186+ >TCONS_00046239 ID=TCONS_00046239|Name=TCONS_00046239|organism=Clytia hemisphaerica|type=CDS|length=12690bp|location=Sequence derived from alignment at scaffold_108:152379..165186+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046239 vs. Swiss-Prot (Human)
Match: RAB7L (Ras-related protein Rab-7L1 OS=Homo sapiens GN=RAB29 PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 5.986e-16 Identity = 44/139 (31.65%), Postives = 75/139 (53.96%), Query Frame = 3
Query: 207 FKIVLVGDSNAGKTSIFLRYTREQFDYSYQPTMNVNIGNVTKKVQFPFETLVSVSLWDLPGREEI-DLRRSYYKDIDAAIVVVDLSDDGSLEMAGTWKQDINNNSTLTTADNNGNEKARRKSVASQAQVPILLIGNKLD 620
FK+++VGD+ GKTS+ RY+++ F Y+ T+ V+ K +Q+ +V + LWD+ G+E + R YY+D A +++ D+++ + + WKQD+++ TL NG VP LL+ NK D
Sbjct: 8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFA--LKVLQWSDYEIVRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLP----NGEP------------VPCLLLANKCD 128 The following BLAST results are available for this feature:
BLAST of TCONS_00046239 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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