TCONS_00002705 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002705
Unique NameTCONS_00002705
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2320

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002705 ID=TCONS_00002705|Name=TCONS_00002705|organism=Clytia hemisphaerica|type=transcript|length=2320bp
AAATCCAATTCTGTCAGAGTTACTAGCCCAGGACCATTCAACACTGGTCC
AGCTCAGGCTCGTTTGAACAACAAATTAACCTCGTCTGGATCAGGAGCCT
GGGAaccaaaagacaaagaagctcATCTTGATatcattttcaacaaaatg
GAAGATGTTCGAGAAATCAGAACACAAGGATCACCTAGAATTAATCGATT
CGCTAAACGTTTCTTTGTTTTCTATTCCCTTGATGGTGAAAACTTCGAGC
AAGAGCCATTGCCATCGCCTGATGGCTCACCTATCTTCGAAGGAAATACT
GACAACAATGGAATCAAAGTTAACAAACTGAACATCAAAGCCAAAGCCAT
TCGTATTGTGCCAGCTAATGATGAATCTATTGGTGAACCTAAAGTTGCAA
TGAGAGTTGAATTTTATGTTTGTCCACCATGCTTCACCACACCATTACCA
CCAGTGACCACGCCACAATCTACGACAACAGTAGGAAAATcaacGAACAT
TTACACTGAACCACCACAATCCACTGAACCGCAAGTTGGAGAAACTACAA
CAAAGGCTTCAACAACTCAGTCACAATCAACAAAAGAATCCTCGACAACT
CCATCGCAATCAACAAAAGCCTCAACAACTCAATCGCAAACAACAGCAGA
AGCCTCAACAACTCAATCACAAACAACAGAAGCTTCAACAACTAAATCGC
AAACAACAGCAGAAGCCTCAACAACTCAATCGCAAACAACAGCAGAAGCC
TCAACAACTCAATCACAAACAACAGAAGCTTCAACAACAGAAGATTTAAC
AACAAAATCCTCAACAACAAAATCCTCAACAACTCAGTCGCAATCAACAA
CAGAAGCTTCAACAACTCCATCACAAACAACAGAAGCTTCAACAACTCAA
TCCCAAACAACAGAAGCTTCAACAACTAAATCGCAAACAACAGAAGCCTC
AACAACTCAATCACAAACAACAGCAGAATTCTCAACAACAGAGGCCTCGA
CAACtaaatcaaaaacaacaaaatcctCAACAACTTCTTCGCAAACAACA
AAATCACAAACAACTGAATCCTCGACAACAAAATCTTCAACAATGTCACC
GACAACACCAACTTGTGATTGTAAAAATCTATTGCCAGTTGGAGTCTCCG
ATGGACGAATTCCAGATTCTCAAATGAAATCTAATTCGATCAAAGTCAGC
AATCCTGGACAAGTCTACACTGGACCGGCAGAGGCTCGTTTGAACAACAA
ATTAACCTCGTCTGGATCAGGAGCCTGGGAaccaaaagacaaagaagctc
ATCTTGATatcattttcaacaaaatgGAAGATGTTAGAGAAATCAGAACA
CAAGGATCGCCTAGACATAATCGATTCGCTACACGTTACTTTGTTTTCTA
TTCTCTTAATGGTGTAAACTTCGAGCAAGAGCCATTGATATCGGCTGATG
GATCACCTGTCTTCGAAGGAAATACTAACAACAATGGAATCAAAGTCAAC
AAACTGAACATCAAAGCTAAAGCCATTCGTATTGTACCAGGTAATGATGA
ATCTATTGGTGAACCTCTAGTTGCAATGAGGGTTGAATTTTATGTTTGTC
CACCATGTTCGACAACACCAGCTCCTCCAGTGACTACACGACAATCTTCA
ACAACTCAATCGCAAACGACAGAAGAATCTTCAACAACTCCATCTCAAAC
GACAACAGAATCTTCAACAACTCAATCGCAAACAACATCAGAAGGCTCAA
CAACTccatcaaaaacaacaacagaatCACAATCAACAACAGAATCTCCT
ACCGAAGGATCAACAACACCCAAACCTAAAGAATGCACggttaaagaaac
aaaaatcaaaatcaaacacCAAGAATGTATTTCGAAGGAAGAAATCACGG
TTGCATCATGCTCTGGATCATGTCAATCCTCTGCTACCTTCAGTGCGGAG
CCACCCTTCTTTAGTCAAGACTGTACTTGTTGTAAACCTACGGAATTCAT
TGACGTGCAGGTCCCAATGACTTGTATGCGAACACGTCCAACATCAATGa
tcataaagaaaatcgctaAATGCATCTGCTCAAGATGTGACAGTGAAGCT
GTTATTCCGACTCAACACCCGACCCAGGGAGATGCCATCAACCCGGATGA
TATCTCCAACGAGCCAGTTGTCAGTAAAGCACGCAGGAAGCGAAGCATTA
CTGAAAGACTCTACGATATGGTCTTTGGTCAATAAATCGTTTatgaactg
aaaaaaaaattgaaatattttatcttatttagaacatttttaagtgGGGC
TTTGGGGTGTTAGcagtttt
Run BLAST on NCBI

transcript from alignment at sc0000021:636362..639894-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002705 ID=TCONS_00002705|Name=TCONS_00002705|organism=Clytia hemisphaerica|type=transcript|length=3533bp|location=Sequence derived from alignment at sc0000021:636362..639894- (Clytia hemisphaerica)
AAATCCAATTCTGTCAGAGTTACTAGCCCAGGACCATTCAACACTGGTCC
AGCTCAGGCTCGTTTGAACAACAAATTAACCTCGTCTGGATCAGGAGCCT
GGGAACCAAAAGACAAAGAAGCTCATCTTGATATCATTTTCAACAAAATG
GAAGATGTTCGAGAAATCAGAACACAAGGATCACCTAGAATTAATCGATT
CGCTAAACGTTTCTTTGTTTTCTATTCCCTTGATGGTGAAAACTTCGAGC
AAGAGCCATTGCCATCGGTATGTATAAATTGAACATCATTTGATTTTTGT
TTTCAAATTTAAGAAGCAACAATCGAAGGAGACGGGGAATTGGATGAAGA
AACTGCAGCCCCAAAGAAACTAATCTAATTCAATACCATTTAGGTATCCA
GTGAATCTCGTTATCCGCTGTAAATATGCAATAGATAATTATAGACCTAT
CGTATCGGGGTAAAGTGCTGACAGCCTCGTTCAAATTTTATGGTTCTAAG
ATTAAAAGAAGCTTTTAAAGCAATACTGATGCTTTCAAGTTGAATTTATT
TCTCATCAACTAGCCTGATGGCTCACCTATCTTCGAAGGAAATACTGACA
ACAATGGAATCAAAGTTAACAAACTGAACATCAAAGCCAAAGCCATTCGT
ATTGTGCCAGCTAATGATGAATCTATTGGTGAACCTAAAGTTGCAATGAG
AGTTGAATTTTATGTTTGTCCACCATGCTTCACCACACCATTACCACCAG
TGACCACGCCACAATCTACGACAACAGTAGGAAAATGTATGAAGCCTCCT
TTTTTGTTTATAACAAAGATTTTTCACGTAGCTCCCTGCTTTTTATTTTT
TCTTTCCCTAGTGACTTTAAAATACCTCGGTATTAAAAATGTAATTTTTT
TTTTCAGCAACGAACATTTACACTGAACCACCACAATCCACTGAACCGCA
AGTTGGAGGTAAATAATTGTTGCGCTAATTTTCAAAAGAAATTCATAACC
TTGAAAAATTCTGTATTTTCGTCAAAAACCTTCAAGTTAAGTTCCAATTA
AGGAAACTGTCGGCCACTGGGCAGGAAGTGCAATCGCTCGAGAGAAATTG
ACCCCCGGGAGCAATTGTCCTAGAATGGATATTTTCAAAGGAAATTTGGT
TATTTTAAATCTTTCAAACTTTAGAAACTACAACAAAGGCTTCAACAACT
CAGTCACAATCAACAAAAGAATCCTCGACAACTCCATCGCAATCAACAAA
AGCCTCAACAACTCAATCGCAAACAACAGCAGAAGCCTCAACAACTCAAT
CACAAACAACAGAAGCTTCAACAACTAAATCGCAAACAACAGCAGAAGCC
TCAACAACTCAATCGCAAACAACAGCAGAAGCCTCAACAACTCAATCACA
AACAACAGAAGCTTCAACAACAGAAGATTTAACAACAAAATCCTCAACAA
CAAAATCCTCAACAACTCAGTCGCAATCAACAACAGAAGCTTCAACAACT
CCATCACAAACAACAGAAGCTTCAACAACTCAATCCCAAACAACAGAAGC
TTCAACAACTAAATCGCAAACAACAGAAGCCTCAACAACTCAATCACAAA
CAACAGCAGAATTCTCAACAACAGAGGCCTCGACAACTAAATCAAAAACA
ACAAAATCCTCAACAACTTCTTCGCAAACAACAAAATCACAAACAACTGA
ATCCTCGACAACAAAATCTTCAACAATGTCACCGACAACACCAACTTGTG
ATTGTAAAAATCTATTGCCAGTTGGAGTCTCCGATGGACGAATTCCAGAT
TCTCAAATGAAATCTAATTCGATCAAAGTCAGCAATCCTGGACAAGTCTA
CACTGGACCGGCAGAGGCTCGTTTGAACAACAAATTAACCTCGTCTGGAT
CAGGAGCCTGGGAACCAAAAGACAAAGAAGCTCATCTTGATATCATTTTC
AACAAAATGGAAGATGTTAGAGAAATCAGAACACAAGGATCGCCTAGACA
TAATCGATTCGCTACACGTTACTTTGTTTTCTATTCTCTTAATGGTGTAA
ACTTCGAGCAAGAGCCATTGATATCGGTATATCTTTTAATCTTCCTTCTG
TTAAAAAGTACTATCGAATTAGAGGATCCTAAAGCATTAGTTTTTTTTAT
CGTACAAAAGTCATTGGTTATCTCTCAATCATTGTTTATTTCGAATTTGC
CACCAATGTAAATTTAAATGGTAATTTGAATTAAACTTTTTTGAATTTGA
AATTTTAATGCATCTTCATATTTGTCCTTCGCAAGCTATATTTTTGCTCA
ACATTCCTTAGGCTGATGGATCACCTGTCTTCGAAGGAAATACTAACAAC
AATGGAATCAAAGTCAACAAACTGAACATCAAAGCTAAAGCCATTCGTAT
TGTACCAGGTAATGATGAATCTATTGGTGAACCTCTAGTTGCAATGAGGG
TTGAATTTTATGTTTGTCCACCATGTTCGACAACACCAGCTCCTCCAGTG
ACTACACGACAATCTTCAACAACTCAATCGCAAACGACAGAAGAATCTTC
AACAACTCCATCTCAAACGACAACAGAATCTTCAACAACTCAATCGCAAA
CAACATCAGAAGGCTCAACAACTCCATCAAAAACAACAACAGAATCACAA
TCAACAACAGAATCTCCTACCGAAGGTATAAAACCTTGAAAGTGTCCACT
CATACTCATTATTAAGTCTGTCTCAATATAATTTGTATCGGAAGCATTGA
GTGGCACTAACTCCGTTTCGAAAAATTTTCAACAAAACTAAATACAATTT
AGTTCTCTTATGAATCTATCAAACCAAAAGAGGCTTTTTGAATCAATCCG
CTATCAAAAGTTATACTTGCCTCTGCTGCATATTGAGAAAAATGTGTTCT
ATTGGTTTTCTAGTTAGTCAAAAGGCTCTTTCAATTTATTCTCACAGTTC
TGCGATTGTGTTTGAACTAACAAAAGGAAACAGATTATCTCAAACATATT
CTCCAACTTTTTATCAGCAGGATCAACAACACCCAAACCTAAAGAATGCA
CGGTTAAAGAAACAAAAATCAAAATCAAACACCAAGAATGTATTTCGAAG
GAAGAAATCACGGTTGCATCATGCTCTGGATCATGTCAATCCTCTGCTAC
CTTCAGTGCGGAGCCACCCTTCTTTAGTCAAGACTGTACTTGTTGTAAAC
CTACGGAATTCATTGACGTGCAGGTCCCAATGACTTGTATGCGAACACGT
CCAACATCAATGATCATAAAGAAAATCGCTAAATGCATCTGCTCAAGATG
TGACAGTGAAGCTGTTATTCCGACTCAACACCCGACCCAGGGAGATGCCA
TCAACCCGGATGATATCTCCAACGAGCCAGTTGTCAGTAAAGCACGCAGG
AAGCGAAGCATTACTGAAAGACTCTACGATATGGTCTTTGGTCAATAAAT
CGTTTATGAACTGAAAAAAAAATTGAAATATTTTATCTTATTTAGAACAT
TTTTAAGTGGGGCTTTGGGGTGTTAGCAGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001463XLOC_001463Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002705-exon-sc0000021-1575043694:639628..639894TCONS_00002705-exon-sc0000021-1575043694:639628..639894Clytia hemisphaericaexon
TCONS_00002705-exon-sc0000021-1575043694:639109..639331TCONS_00002705-exon-sc0000021-1575043694:639109..639331Clytia hemisphaericaexon
TCONS_00002705-exon-sc0000021-1575043694:638937..638987TCONS_00002705-exon-sc0000021-1575043694:638937..638987Clytia hemisphaericaexon
TCONS_00002705-exon-sc0000021-1575043694:637819..638720TCONS_00002705-exon-sc0000021-1575043694:637819..638720Clytia hemisphaericaexon
TCONS_00002705-exon-sc0000021-1575043694:637220..637583TCONS_00002705-exon-sc0000021-1575043694:637220..637583Clytia hemisphaericaexon
TCONS_00002705-exon-sc0000021-1575043694:636362..636874TCONS_00002705-exon-sc0000021-1575043694:636362..636874Clytia hemisphaericaexon
TCONS_00002705-exon-sc0000021-1510915933:639628..639894TCONS_00002705-exon-sc0000021-1510915933:639628..639894Clytia hemisphaericaexon
TCONS_00002705-exon-sc0000021-1510915933:639109..639331TCONS_00002705-exon-sc0000021-1510915933:639109..639331Clytia hemisphaericaexon
TCONS_00002705-exon-sc0000021-1510915933:638937..638987TCONS_00002705-exon-sc0000021-1510915933:638937..638987Clytia hemisphaericaexon
TCONS_00002705-exon-sc0000021-1510915933:637819..638720TCONS_00002705-exon-sc0000021-1510915933:637819..638720Clytia hemisphaericaexon
TCONS_00002705-exon-sc0000021-1510915933:637220..637583TCONS_00002705-exon-sc0000021-1510915933:637220..637583Clytia hemisphaericaexon
TCONS_00002705-exon-sc0000021-1510915933:636362..636874TCONS_00002705-exon-sc0000021-1510915933:636362..636874Clytia hemisphaericaexon
TCONS_00002705-exon-sc0000021-1491911889:639628..639894TCONS_00002705-exon-sc0000021-1491911889:639628..639894Clytia hemisphaericaexon
TCONS_00002705-exon-sc0000021-1491911889:639109..639331TCONS_00002705-exon-sc0000021-1491911889:639109..639331Clytia hemisphaericaexon
TCONS_00002705-exon-sc0000021-1491911889:638937..638987TCONS_00002705-exon-sc0000021-1491911889:638937..638987Clytia hemisphaericaexon
TCONS_00002705-exon-sc0000021-1491911889:637819..638720TCONS_00002705-exon-sc0000021-1491911889:637819..638720Clytia hemisphaericaexon
TCONS_00002705-exon-sc0000021-1491911889:637220..637583TCONS_00002705-exon-sc0000021-1491911889:637220..637583Clytia hemisphaericaexon
TCONS_00002705-exon-sc0000021-1491911889:636362..636874TCONS_00002705-exon-sc0000021-1491911889:636362..636874Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:636362..639894 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.10108	0.951834	1.03319	0.446143	1.87136	1.09327	2.26719	2.99619	4.36664	4.1813	8.17741	5.751	12.4576	15.0954	4.48866	3.74022	1.31267	2.62781	50.129	43.0336	4.34943	4.89567	2.88797	4.92369	11.4149	10.0122	0.00808359	0.0963813	0.0787925	0.115291
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002705 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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