TCONS_00021339-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00021339-protein
Unique Name	TCONS_00021339-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	530

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00021339-protein ID=TCONS_00021339-protein|Name=TCONS_00021339-protein|organism=Clytia hemisphaerica|type=polypeptide|length=530bp
FRYKKVRNTVKMKNRSELDERIVDRIVDECYELYSKVCKQKKKVLSKNEW
TNMACVVKTMGQVGQDIEVISLATGTKCIGECHRVQTGRLLNDSHAEVLA
RRLFMKYLYKEIRMALDCHNTNSIFVLDGNKVRLKEDIQFHLLTTEIPCG
DASIFPKTSVVVSHKPSNNTDSKREHTDELCRQPDTNKRQRIDPKGRTLD
NQQVMEKCIYDEKLHLQKPLWVDSKTTQSFDQQKQCDPDNDIGQLDLKQN
HENAGSGYKACNVSNCANTTNSSLTSKNEESKSKILQDADIFRTGAKCVP
SGRQDPLGEGGQYHTTGALRIKPGRGFRTMSMSCSDKILKWCTLGIQGGL
LSNFIHDGIFLSSIILTSPNFDESAFSRALSFRGRDSFESLVMRKVDVLH
VDERPFADGKERVQQRCLNEKITSSGVAILWCGVCAIHSFSSNGRKHGII
KKHFNSDIACTPICKLKLFNDFHETLNHSPLLEKSVDGGLGRTYHHFKHS
SIDYEKQRELFFKVFHDWTRKPSAHEQFTI

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_011951	XLOC_011951	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00021339	TCONS_00021339	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002466	A_deamin

Vocabulary: **Molecular Function**
Term	Definition
GO:0004000	adenosine deaminase activity
GO:0003723	RNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006396	RNA processing

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
molecular_function	GO:0004000	adenosine deaminase activity
molecular_function	GO:0003723	RNA binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002466	Adenosine deaminase/editase	SMART	SM00552	adara_8	coord: 21..529 e-value: 3.2E-56 score: 202.7
IPR002466	Adenosine deaminase/editase	PFAM	PF02137	A_deamin	coord: 71..522 e-value: 4.3E-71 score: 239.9
IPR002466	Adenosine deaminase/editase	PROSITE	PS50141	A_DEAMIN_EDITASE	coord: 71..528 score: 34.417
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..197

Blast

[Close]

BLAST of TCONS_00021339-protein vs. Swiss-Prot (Human)
Match: ADAT1 (tRNA-specific adenosine deaminase 1 OS=Homo sapiens GN=ADAT1 PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.877e-58
Identity = 165/550 (30.00%), Postives = 244/550 (44.36%), Query Frame = 0

Query:   23 VDRIVDECYELYSKVCKQKKKVLSKNEWTNMACVVKTMGQVGQDI-----------EVISLATGTKCIGECHRVQTGRLLNDSHAEVLARRLFMKYLYKEIRMALDCHNTNSIFVLDGNK--VRLKEDIQFHLLTTEIPCGDASIFPKTSVV----------VSHKPSNNTDSKREHT--DELCRQPDT--NKRQRIDP--KGRTLDNQQVMEKCIYDEKLHLQKPLWVDSKTTQSFDQQKQCDPDNDIGQLDLKQNHENAGSGYKACNVSNCANTTNSSLTSKNEESKSKILQDADIFRTGAKCVPSGRQDPLGEGGQYHTTGALRIKPGRGFRTMSMSCSDKILKWCTLGIQGGLLSNFIHDGIFLSSIILTSPNFDESAFSRALSFRGRDSF---ESLVMRKVDVLHVDERPFADGKERVQQRCLNE--KITSSGVAILWCGVCAIH-SFSSNGRKHGIIKKHFNSDIACTPICKLKLFNDFHETLN--------HSPLLEKSVDGGLGRTYHHFKHSSIDYEKQRELFFK-VFHDWTRKPSAHEQF 528
             D I   CYE Y     +K K    +EWT +A VVK      +             EV+S+ TGTKCIG+    + G +LNDSHAEV+ARR F +YL  ++++A      +SIFV    K   +L+ D+ F   ++  PCGDASI P                +H  S    S  E    +  C  PD+   K+ R++P    R + N                      +   QSF +QK       I   DL               V   A  T  +  S      +K++   D++RTGAKCVP    D    G  +H  G LR+KPGRG RT SMSCSDK+ +W  LG QG LL + + + I+LS++++    + + A  RAL  R ++     +   ++++ +L  D   F   +  VQ +  +   ++   G AI W  V       ++NG   G  KK   S  A + I K++LF  F + L+        HS  ++K +D     TY  +K ++  Y++      K VF  W R P  + QF
Sbjct:    4 ADEIAQLCYEHYGIRLPKKGKPEPNHEWTLLAAVVKIQSPADKACDTPDKPVQVTKEVVSMGTGTKCIGQSKMRKNGDILNDSHAEVIARRSFQRYLLHQLQLAATLKE-DSIFVPGTQKGVWKLRRDLIFVFFSSHTPCGDASIIPMLEFEDQPCCPVFRNWAHNSSVEASSNLEAPGNERKCEDPDSPVTKKMRLEPGTAAREVTN---------------------GAAHHQSFGKQKSGPISPGIHSCDL--------------TVEGLATVTRIAPGS------AKVI---DVYRTGAKCVPGEAGDSGKPGAAFHQVGLLRVKPGRGDRTRSMSCSDKMARWNVLGCQGALLMHLLEEPIYLSAVVIGKCPYSQEAMQRALIGRCQNVSALPKGFGVQELKILQSDLL-FEQSRSAVQAKRADSPGRLVPCGAAISWSAVPEQPLDVTANGFPQGTTKKTIGSLQARSQISKVELFRSFQKLLSRIARDKWPHSLRVQK-LD-----TYQEYKEAASSYQEAWSTLRKQVFGSWIRNPPDYHQF 501

The following BLAST results are available for this feature:

BLAST of TCONS_00021339-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00021339-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ADAT1	2.877e-58	30.00	tRNA-specific adenosine deaminase 1 OS=Homo sapien...	[more]

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TCONS_00021339-protein (polypeptide) - C. hemisphaerica