TCONS_00013585 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013585
Unique NameTCONS_00013585
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length500

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013585 ID=TCONS_00013585|Name=TCONS_00013585|organism=Clytia hemisphaerica|type=transcript|length=500bp
GTGTTTTTCCGTGAAGTCAGCTGCCTTAACAACCTCTTAACATTTTATTG
AAACATGTAGCATGTTCTAAAAATTTTTGACCtctcgaaaccttatgttc
ttatattctttgttcttataaaaaaaacaagagtGTACaattaaatattc
aataaaagctGCTTCTCTTCCTCGCTTACGTTATCAGCCCATGTGATGGC
ACCGGTGAATTTAATGTTTGTCCATTTTGGAGATTTTCGTAGACAATGAT
CTTTTGGACATACATACATGGCAACTTCCATCACTGCCTTTTCCTTACCA
AAGGGTATTCTCAAACGCCTTGCACTTTAATCGCTAATTCACCGATACTC
AAAACGGTCTTACAAGCTTGGCATTTTGCTGTGCGGTTTTCCTTATGGTG
CACCGTGAAACTTTGGGGGTTATTGAAATCAGGGTGCTGCAGCAAAATGG
CTTTCATATCTTTCcctgtttttgtgttttttcttgTACTAATATATTTA
Run BLAST on NCBI

transcript from alignment at sc0000170:11..614-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013585 ID=TCONS_00013585|Name=TCONS_00013585|organism=Clytia hemisphaerica|type=transcript|length=604bp|location=Sequence derived from alignment at sc0000170:11..614- (Clytia hemisphaerica)
GTGTTTTTCCGTGAAGTCAGCTGCCTTAACAACCTCTTAACATTTTATTG
AAACATGTAGCATGTTCTAAAAATTTTTGACCTCTCGAAACCTTATGTTC
TTATATTCTTTGTTCTTATAAAAAAAACAAGAGTGTACAATTAAATATTC
AATAAAAGCTGCTTCTCTTCCTCGCTTACGTTATCAGCCCATGTGATGGC
ACCGGTGAATTTAATGTTTGTCCATTTTGGAGATTTTCGTAGACAATGAT
CTTTTGGACATACATACATGGCAACTTCCATCACTGCCTTTTCCTTACCA
AAGGGTATTCTCAAAGTGCCTTGGACTTTAATCGCTAATTCACCGATACT
CAAAACGGTCTTACAAGCTTGGCATTTTGCTGTGCGGTTTTCCTTATGGT
GCACCGTGAAACTNTAAAGCGCCTTGCACTTTAATCGCTAATTCACCGAT
ACTCAAAACGGTCTTACAAGCTTGGCATTTTGCTGTGCGGTTTTCCTTAT
GGTGCACCGTGAAACTTTGGGGGTTATTGAAATCAGGGTGCTGCAGCAAA
ATGGCTTTCATATCTTTCCCTGTTTTTGTGTTTTTTCTTGTACTAATATA
TTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007589XLOC_007589Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013585-exon-sc0000170-1575043694:300..614TCONS_00013585-exon-sc0000170-1575043694:300..614Clytia hemisphaericaexon
TCONS_00013585-exon-sc0000170-1575043694:11..195TCONS_00013585-exon-sc0000170-1575043694:11..195Clytia hemisphaericaexon
TCONS_00013585-exon-sc0000170-1510915933:300..614TCONS_00013585-exon-sc0000170-1510915933:300..614Clytia hemisphaericaexon
TCONS_00013585-exon-sc0000170-1510915933:11..195TCONS_00013585-exon-sc0000170-1510915933:11..195Clytia hemisphaericaexon
TCONS_00013585-exon-sc0000170-1491911889:300..614TCONS_00013585-exon-sc0000170-1491911889:300..614Clytia hemisphaericaexon
TCONS_00013585-exon-sc0000170-1491911889:11..195TCONS_00013585-exon-sc0000170-1491911889:11..195Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000170supercontigsc0000170:11..614 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.38859	0.751791	1.33769	0.270102	3.30837	2.28856	1.95541	2.31476	0.866066	0.954604	1.7113	1.40905	1.66842	2.80022	1.66631	1.69551	2.21102	2.20803	2.48205	2.55446	3.71081	4.09236	1.09231	0	1.77841	3.84654	0	1.08936	2.48365	0.689338
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013585 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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