TCONS_00002602 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002602
Unique NameTCONS_00002602
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2079

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002602 ID=TCONS_00002602|Name=TCONS_00002602|organism=Clytia hemisphaerica|type=transcript|length=2079bp
ATTGACATTCTCTAGTGAAACAAGGGCTTTAAATAGTTTTTTCGAAGAAA
AACTTGAAAGTGAAACCGAAGCCAATCCCAGTTCGCAGCACCAGCAGACC
AGACACCAGATGCAGTGCAGATAGAGTGCAGACAAGTATCGTAAGTGCAG
CAACAAAAAGTACTATAAACTGAATCTTCAAACTTCCGAGGGAATACCTA
GgTAAATTCCTTCATGGAATCAGCAAGTGCTTCGCCCATTTCCTTTCTAC
ACACCTCACCAACACAACATGACAAAGCTCTCAAATCAGCTTTTTACAAT
ACAGCATCTTTTGTTTTCGCAATTATCAGTGGTATTATCCTGTTGAATAC
ATACTTTGTGCTGCATCCTTTCTTGAGACCATTAATATGGGCATCTTTGG
CTGGTGCTTTTATATTTCCTTTTAAGAGGAATGCTACTAAAATTGTTCAT
GAATGGCTACTAGATCTACAAGTTGATAAAACACCATCCATTGTTGGGAT
GATGGTCCTTCCTGCCAAAGTTGTCAGTAACGCTGCCAATACTCTTGGAT
GGGTCATCAAATCATACCAAAGATTGTTATTCATAGTCTTTACAGCATAT
GTTTTATTCAATCTTTGGCTTCACACTTATTTCTTTGCATGggcttttca
aattttttcatcctgCCACATGTTTCTATCAACCTTGCTGGCCTTGTTCA
GTCAAAAACTGATTATTTTGGCATTTGTTTTGGGATACATTGTTTTACTC
TTTAATTACAAGAAAAGGGACAACCAAACCTTTATGACCGTCATTTCGAT
GTCTGTTTGGTCTGTTTTGGCGTTACATCTGGCGACGTATGCAGGAAGTC
TACAAATACCAATATCTTTGCTATTTCTGGCTATTATGGGAAGAGCCTTA
TACTTATCACATTATGGCAAACTGCCTGAATCGATCATGGAGGACGATAC
CACTTGCTATGAACATCCTTCAGAATCAGTGGAATCTTCACTGCACCAAT
CAACCAAACCAACCACAATATTTCACCCACCACCGCCACCAGTCAACTCA
CCAGCACCGCCACCCCAACCACCAGCCACGCACAAGAAAGCTGCAGGATT
GAACAGGAGCAATTCAAGAGTTGCAGATGGTATCCATGGTTTCATGAATA
TGGTTGGaatcaaaacaatcacaaaATCAAGCACTGATACTCTTTTAGAA
CAATCGGATTCAGATACCAGTGATTACCAACCTGAAACAATAGACACTAC
TAACCAGATTCCCAAAAAACCACCCAGTGTTGAGAACCTTATACCAGGAA
ATCCAAAAACTCCAACCAGAccaccaaaacttgtaaaacgTGTTGCCTTG
AAACTAATGCACGATGTTTATAAATCAAAGACAGGACATTCTCATAAGAG
AATAAAACGTAGCAGTGATCCTTATTtcattgctttgttttggttgtttG
CCATCAGTCTTATTGTTCGACATCAATTCATTCTTTACGTCATTGTGGCA
CCTTTACTGGTCTTCATTGCTTTGAGATGGATTATCAATCGGTATGAGAT
ACTTGATTTGATGTTATGTAAACTGATCGATGTCATTCATGTGGTCAGAA
ACTTCTACGAAGACAGAAAGTATATCATTTTTCCTAAACCTGTTCGAAGT
ATTGGGATCTTTTGTCATGGATTAGACCAACAGCTGATGTCAATGATATG
CCAATGGACAGATTTGTTCATGACAGCACTCATCATTGTTTGTATGGCAT
TCGCGGTGGTTCTTCTCACCACATTATTCGCAGTACAGGTTCATCACGAG
AGTACATTTTTGTTGACGGTGGGTGCCAATGTCGTTAACAAAACTATCGC
TGCAAATCAAGATTGGCTTGATTCATACAACCTAAATGAAGAGCAAGTTC
GACAATACATGGATCACTGGATGGAAGAAGGCTACCACATGGCAAGAAAA
AGAGTTAAAGggGCATTCTCATCCTTTATCGAAACTAACGATACAACCAC
GACAGACCATCTGGAAGCTGAACTCACTGTCTTCATGGATAAACTTTATG
AGGAGTGGCTGAATTTGAATCCAAAAGCG
Run BLAST on NCBI

transcript from alignment at sc0000021:178542..193161+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002602 ID=TCONS_00002602|Name=TCONS_00002602|organism=Clytia hemisphaerica|type=transcript|length=14620bp|location=Sequence derived from alignment at sc0000021:178542..193161+ (Clytia hemisphaerica)
ATTGACATTCTCTAGTGAAACAAGGGCTTTAAATAGTTTTTTCGAAGAAA
AACTTGAAAGTGAAACCGAAGCCAATCCCAGTTCGCAGCACCAGCAGACC
AGACACCAGATGCAGTGCAGATAGAGTGCAGACAAGTATCGTAAGTGCAG
CAACAAAAAGTACTATAAACTGAATCTTCAAACTTCCGAGGGAATACCTA
GGTATGGaaaatttatttcattatcaaattatcaatagggtaccgtcaac
tgctctaactaaCTTGCAACTTGGGGCGATCATTGCCATTGGTCgatcga
aacatgggactgttgcatatctggtctgtattttcacttactgtaaaatc
gaaagagaaatcgtgtgtTTTTTAGtacgccgttccttaactcaaatcaa
atgactttggaggttcggtgaaatggtggcagaATTGCcatgccgtccca
tgttttgtcagatagtcccaagttaagTGAGCAGTTCTGAAGATAGCTAA
GTCACTCTTTTCGTCCTTTTTCCAAAAAGCTGGTGGCAGCTTGGTATAAT
TTGTGTATTTTCCATTTCAAGAGATTTTGCGCAAGTCATTGATGACGCAA
TAAatcaacaaataaaagaaaccaataaaagaaaaaagctgTAAGTGAGA
AAAAATGATTGTTCGTCAATCTTGGGGATTTCCAAAACTCAAGAGATTAA
GTTGACGGGTTTCATGAGTTTTCCTGTCACTCTACAAATCAATTTTAAGA
TCAAATAAACGTCATATGACGTTTTGGTATAGCTAacacacccacccacc
ccacaTAATGTCACTCACAAAAATCTGGTACTTTGCTTCTTTTTATTCAG
TCAAGACCAACACCAACTCATGCTCAATGCCATCACCATTTTTGACTCGA
GTGTTgccagttgggtgtttaagataaaaacggcaattattctttttggc
aatttttgccgaaatcggcaattttttaacaatgtAATGCCGCAGCAGCA
AAATATGTTGTCCTTAttataagggcaaagatgtcaaaggtgtttgaaaa
ttgtgaaattgtattgaggaaaaggtttttcggatttttaaaagtaattt
tttcaattttttgttgctCATAACATGGTAAAGTTCTAAAATGATATgta
aaaagatcctgcatcgatgccgaaacacagccagtAAGAGAAAACAAAAC
CCCTGTCGTAACTTTGTTTacatagacctttttgcctttccatccgccgc
catcttgaattgtatgcaaaaatagaggaacgaaaatgccgtggttggat
ttagttggaatgtatgcaaaacatatgcaagtttacacaaagattaaaaa
gacaacaaagcatcttataaagaaatattataatcattagaacaataaaa
gatggaatttcttaatccaaaaagaaatatttacagaacaataaaagcct
tttagaaatttgttcttaaagacattgcatattctgttttcatgccatta
aaagattccaccaagacggagtacacacatcaaactttcaaaacacacag
actgaaagcagtaattatgacgtcacacattctgcgggttcagatcaatg
ttttgatttgatcgtttggcggttctattcccaggagaataatttaccgt
cagccgaataaggattctTTCTggaccttcgcgggtgatttttcagcttg
agtttatgtctaatgctatggttttttgaagtgcttgttctaagagatga
atttgattatttctagttttcaaaagaagcaaatttaatctttcttctac
aagattacactttaatatgggttggtgtaatttaagatgcacgatctaac
gatttacgattcccgatgcgcgatccatgcataaagtatgctgattattc
ctaataattatcataaaacttaattaaataacataattctaaaacgatgg
cataatcttttctcgcttttatgtttaccacggtaaatttatgcaacaaa
aaagaaatagtaagcaatggaactacgaataattacgaccgtaaaattat
gaaaaagactAACTTACATATTGTTCATAATGAGAGTGAAAGTAAATCCT
AACACCCTAACAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNcaagaaatatttttgctctcagttttaacaa
tcataatcgaatataggaatttctttcttaaaagtaaataaaagaatata
ttggcgaacaatatgttttgaggaccgtaatgtacgaagcaaaaaacagg
tgctctattatgagaaagaattttctttcggtaaacaattcccctatatt
tattgattcaagttatgaaaaagagagcaagtacagaaggtgaatgcacg
tggcttctttaaatataatttgtttaACCTTGCATAAATGATATTTTCAA
AGATAATTaagtttcagcgaatgaaagttagtaaattacctaaatatttt
atcatgaataGCATAATTAcacatgaattaacatattttatgcacggatc
gcgaatcgtgcatcgtaaatcgttagatcgtgcatcttaaattacaccaa
ccccttTAATATAATGACAATTATGCATGTacgttttatattaatacttt
ctttttgcatatgttttgcatactttctaagggaatttcaccacggcaat
gcGGCCACCATAacttttgcatacaattcaaaatggcggatggaaaggcg
aaaaggtctatatgactcgattttgctatttatatttccaacaaaaacca
gttgaaaacaaaactaagcgAGGCACAGTAGGTCTATTTATTGCAAGGGT
GTCAAATatataccacgtgttcaatgataaaattaacttttctttcaaaa
acggcaataattgccgaaaacggcaattttcatttatatatttacttttt
ttacttttctgctgattcagcatttcatcatttcaaaaattgctgttttc
ggcaataattgccaaaagagcaataattgccgtttttatcttaaacaccc
aactggtTGCGACCAACTCGGCTTCGACTGGTTTATATATATCTAGACCC
AACTTGCCCAAACTGATAAAGCTGAATGCTTGCCCAAAGTACTCGTTGCT
ACCAGCTGGAATGTGACGCGTGCAATAAATGAAAAGGGCTATGAGCTAtg
gcagtatagacctaactgttcatacaaaaattacgggaaagaCATATTTt
aactttgtaccctatgctgcatgCAAGCACTTTTAAGCTTAAGTCCtgca
aaagcgggacaaaaatcagttttttgaagtttgtaaaaaaaacgccacat
agaagaactttcaaattcagtatgtgaatagagcagtaaaaaatacaact
ttcctattttattttttgctttgcgtactcttcgctttagaaaatgattg
acagattgaagtttttcacccgcgtcGGAGCTCGTGGGCGTTCGCGGGCG
TTCTGCGAGCGTTCTTGGCTCAATCCTTGGACCGCGCTAAAAGACATAGC
Tgcgatagatcatttcgatggaagttgttagaatgtttacaaggctcttg
acagaaaatactatgttttattgtcaatgatgacagcgccgtcattaatt
ttgttagatctgacacactgtattgatttttgtaagtgcactttatagtt
ttgattctcattgaagaatcatattctggttttcatgttattagatgctg
ttttagagctttagagctaacCTTTATGAGCGCACTTGAATCGCTCAATA
AAATCTAGCGCATAGAAATCACCCCCGCATAAAGTTAACAGATCTGAAAA
TACAGCGCTAGGTTTTATGGATTTTTGTAGATAACTGTGTTGCAGAGCGC
GCGTACACTCGCACATGTTTCACTACggattttatttcatatttcgattt
aaaagcctactcagtgcgaaagagaaattgtgtattttttaatgcgcagt
tcattaactcaaatcaaatgactttggaggtttggtgaaatggtggccga
attgccatgccgtcccatgttttgtcagatagtcccaagttaacttagag
cagttgacggtagctaAGTCACTCTTTTCGTCCTTTTTCCAAAAAGCTGG
TGGCAGCTTGGTATAATCTGTGTATTttccatttcaagaaattttgcgCA
AGTCATTGATGACGCAAGAAatcaacaaataaaagaaaccaataaaagaG
AAAATGGTAGCCAGattgccatcccatgttttgtcagatagtcccaagtt
agagtagTTGATGTTATTAGTCCTCTGCCTGAGTTGGCTACACCGTACCA
CACCAATCCTATTTTGCGATTGACTGCTTAGAATGCAGAAAACTAATACA
AAATTTGATCTGAAAGAATTTCTTTTAGTAGTTATCTTCTTTACTGTgta
aaaatgtgtaaaaaaaattagagaaaCAAAAgagtagaaaaaaagaaaac
ctttgtTGGGATCAAAGCATTCGAAAGGCATATGTCTTAAACTTTGACAG
TTTCAATATGAAGTTTGACATGTTAGCTCATTATATGATCCATAAATGTA
CACACATTTCACTAAGTAAAATGTTCATATTGATGGCTAGAAATTTGGCT
AGAATGTATAGGaatttgcaaaatttgtaaattttgcctGCCAATATTCA
ATAAGGTGgatgaataaataaaaattcctGTGATCATTGGTATGTTCGCT
CTCATTCGGTCAATTCTATTCTATCACAACAGTGGAACTGCACTAAAGAG
AGGCAACTTAGTTACGTCAAACCTGATTCACTGATCCACTAAGCCCTTGC
AATACAAGTAAATTGCAAACAAAAAAGGCGGTCCTTTTGAAACGCCTCAC
CTTTAGCGTTCTCTCTGTTCTTTACAATGTTTCGTTTGCATAATTCAACT
CTAACACTTTTGACTGAAAATCACTTGTGGATTTTTCTCACGCATGCGCA
ATACAGGCTAGGGAAAGCCATTTTCCAGAAACTCAAAATGATTTTCCCAA
AGTGGGAATTAACTTTTTTCCCAATCCAAGAATTTGTTTCAGAAATCACA
TTTCTTGTACTGGAAAGAGAGAATAGAATAAAGCAAAACCCCcttgctta
ttaatttttggaaaaatgtttttgaaagttccctcttttgtcctaattct
gctgtattagcctccttttcaaaagttttccacccaggacatttttattc
caacccacccgcttattccaaccccccccggctattaggtacctgagagt
aaatagttcatgatatttatttttcctaGCTTGTAGAGAGCAATCCAGAG
CAATTATGCAAAAAGCTTGAGATATCTTTTCTGaatattaaatttcaaaa
aactaaaacttaaagaaatgttttttgtttttttacaggTAAATTCCTTC
ATGGAATCAGCAAGTGCTTCGCCCATTTCCTTTCTACACACCTCACCAAC
ACAACATGACAAAGCTCTCAAATCAGCTTTTTACAATACAGCATCTTTTG
TTTTCGCAATTATCAGTGGTATTATCCTGTTGAATACATACTTTGTGCTG
CATCCTTTCTTGAGACCATTAATATGGGCATCTTTGGCTGGTGCTTTTAT
ATTTCCTTTTAAGAGGAATGCTACTAAAATTGTTCATGAATGGCTACTAG
ATCTACAAGTTGATAAAACACCATCCATTGTTGGGATGATGGTCCTTCCT
GCCAAAGTTGTCAGTAACGCTGCCAATACTCTTGGATGGGTCATCAAATC
ATACCAAAGATTGTTATTCATAGTCTTTACAGCATATGTTTTATTCAATC
TTTGGCTTCACACTTATTTCTTTGCATGggcttttcaaattttttcatcc
tgCCACATGTTTCTATCAACCTTGCTGGCCTTGTTCAGTCAAAAACTGAT
TGTAAGTATTAAGtatatacatatttttttatcagaatAGGTAACTTAAA
TTATGAGAATATCAAGTTGAGGTTTAGATATCTCAAACAACATTTTAATT
GAGAATAATGCTTGTTTTCATTAGTacattattttcatttaaaaagatTC
AATCTTTTATAGTTCCtttaaataatttaatttgCATGGCTTTTGCAATG
CAAGATCAGCAATCATATGTTGTATAAGTTGGCTttaaagggaacgacgc
atggtatatttatgaaatgctgatctagcattggcacaaacacccatacg
gaggagtatttaggagtgctggatcataacaaaaaccaaaagtgacttta
ttccaaaaaatatattcaaaaaagtgaatataatttactacaatgttcaa
caacaacacaaaaagacttacataaaactgaaagaaataaagaatgtctt
tttcttttgaatgaaatcgagtgtttctatttttaaatgaagacattcta
ttgtgaatttattcgaaaacttctttgcaatctttttgtNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtaag
ccaatcagctttcgggctgacatcagcatgtatttcagagtataccatgg
aagtaccagcaactccgacccctactataagtatagcgctattCCCTTTA
ATACATAATGTCAAGAACCTCTTCAATCAAAccgatattttttttgaaaa
ctaatAGAATTTATATGCTACTTTTAATTTAGATTTTGGCATTTGTTTTG
GGATACATTGTTTTACTCTTTAATTACAAGAAAAGGGACAACCAAACCTT
TATGACCGTCATTTCGATGTCTGTTTGGTCTGTTTTGGCGTTACATCTGG
CGACGTATGCAGGAAGTCTACAAATACCAATATCTTTGCTATTTCTGGCT
ATTATGGGAAGAGCCTTATACTTATCACATTATGGCAAACTGCCTGGTAT
ATAATATGTTGATTCAAGTTTTGTCTCAATCATAACTTTACTTCATGCtc
agaattttcaagaattttgcatTCATTATAAAATTAGACAAAGAGCttac
atatttttcttttctcattAAAACGTTTAGAGAACTACCTTTGTGTACCC
TTCATATCAAATCTATCATGCCTTAAAGTTCGAGAAGACTGAGTTTAGAG
TCTAGGTAGGATTAATTTGAAATGTGTGAAGTTGTTGCATTGATTACCTC
ATGGAACCAGGCACGTCATTTCAACCTAGTACTTCCACCTAATCCCTTTG
TGGTGTTTATGGTACGTATAATAACTCTTAATAAGAGAAACTCCAaagtc
tttttcttcttttctctaCTGTAGAATGGATCATGGAGGACGATACTNCT
TAATAAGTGAAACTCCAaagtctttttcttcttttctctaCTGTAGAATC
GATCATGGAGGACGATACCACTTGCTATGAACATCCTTCAGAATCAGTGG
AATCTTCACTGCACCAATCAACCAAACCAACCACAATATTTCACCCACCA
CCGCCACCAGTCAACTCACCAGCACCGCCACCCCAACCACCAGCCACGCA
CAAGAAAGCTGCAGGATTGAACAGGAGCAATTCAAGAGTTGCAGATGGTA
TCCATGGTTTCATGAATATGGTTGGaatcaaaacaatcacaaaATCAAGC
ACTGATACTCTTTTAGAACAATCGGATTCAGATACCAGTGATTACCAACC
TGAAACAATAGACACTACTAACCAGATTCCCAAAAAACCACCCAGTGTTG
AGAACCTTATACCAGGAAATCCAAAAACTCCAACCAGAccaccaaaactt
gtaaaacgTGTTGCCTTGAAACTAATGCACGATGTTTATAAATCAAAGAC
AGGACATTCTCATAAGAGAATAAAACGTAGCAGTGATCCTTATTtcattg
ctttgttttggttgtttGCCATCAGTCTTATTGTTCGACATCAATTCATT
CTTTACGTCATTGTGGCACCTTTACTGGTCTTCATTGCTTTGAGGTATTG
ATTTTtgtttataagcaaccaggttgctaaggATGCTGCCCTCATAATTG
CCAAttttttcactatctcgtaaagtaaaaacctttttaaataatttaac
cATAACAAACAATAGTCGATTATATCCGAggcaatcaaatcaaatttttc
agaacacgagctagaatgctaagcatctCCATggctgacccgaaaattgg
tgttgctttttaaaaaaagtgtgtattgaAAACTGAACTGAAGTATTTAA
AATCGTTGAATACACATTAAAACTTATAACTCGTACAGTAGATTACCAAG
ATTctatgttcttttaaaaagtttctAAGGTTTGGAAAGTGAAAAAACTG
GATATTATTCATGGGACCCGCGGCAAGCcattttgagggggggggggggg
gcaatattttgggaaaaaatgtcaccatggttgggcgacgaagaaattct
ttttactttttacaccctcaaaacaccttaaaacgttATGTAATTGTGGa
aaataatagtttttatggcttaaaatttaataactttaaaaaaagtatgG
CATGGTCTGCGTTGACGGGGCCCATGTCATTgaagatttttgtattttga
ttaaTCCATAGTATGTCAACTCGACTGCATCAATCTTTTATATACAGCAA
AACATTATTAGTTCTATTACAAATATTCACAAAAGCTCTTTTTGGTTTAT
TTCCTTAGATGGATTATCAATCGGTATGAGATACTTGATTTGATGTTATG
TAAACTGATCGATGTCATTCATGTGGTCAGAAACTTCTACGAAGACAGAA
AGTATATCATTTTTCCTAAACCTGTTCGAAGTATTGGGATCTTTTGTCAT
GGATTAGACCAACAGGTAATCCATTTTTGTCTTAGATTGGACCAAAATCA
GTGTTGAAAGTTTctccgtctcagacggatttccgtctcagcaAAGCAAA
TAAAGAGGCTTTTCTGTTGCAAAATTCTTTATTATTCACTAAAATTTCAT
GAAGTGattgttttaattgttttatAATTAAAATCCAATTTCCATCTCAg
acgaaaaaccttgctttgaccactacAAAGTATGATACAATTATTTCAAG
CTAATAAGTGACTTTACAAATTCCAACGAGTTACTGATAATATTTATTAT
GGttgtcaaagcaaatttttttcccCTCAGATGGAAAGCTAAGGGATACA
ATATAATTAGCTGAGATCTTTCAAATGTTACtgaatttttcttaaatctG
AGAAGGACTGAAGCCCGGAATCTTCGAGCTAGAAAACTTTGAGTTAGCTA
AAAAAtgtgcaaattatgacgtcactcgactctaagtcgattttttattt
tcaatgaggtcgtaatttagctaactcgaatattgctaactcgaagtttt
ctaactcgaaaattccagGCCTCAGACGGACATGCATATTTTCATACTTC
CCCCAAGACGGAAATCCGTTTGAGCTGGAATTTATAACTCTGGATATTAA
TATAGGACTCTTCTCGTTCTTCTTGAGATTCTTAGAGCCATCTCAGGTAT
TGTTTTCAAATTATTGTTGCAAAGATAGTTCAACATCACTAAACCTGATA
TGCGTTTACCATACTGCAGAACCAGAATTTACATTCCTACTCTTAGATAT
CTCCTCAGCATGGTCCAttgacattttctttctttacagCTGATGTCAAT
GATATGCCAATGGACAGATTTGTTCATGACAGCACTCATCATTGTTTGTA
TGGCATTCGCGGTGGTTCTTCTCACCACATTATTCGCAGTACAGGTATGG
AAATGCATTAATCTGCTTTACGcgattttttgccttttttgcgATTTGCT
GGCTCGCTAAATTCAGTGTTCAAAGTTCTTCCGTCGGTGTTCCGTTCCAG
TGAAGTTTATAAAGTGCCTTTTATATCTGCTAATTtactgtgtaaaatcc
attctCCGTCTCAGACTTTTTGTGACAGACATTGGCGTTTTCAGGGGGAT
TTTCaactgatttttggacctaccccggtggggtgaaggtcctataaatt
cacctctgtccgttcgtccgtctgtctgttcgttaccagcttttctcgag
attgaatcataggaatcatttgatttttggtacaaaggtgcaaaacggtg
atggccaaaatgtgacggagcccgattttcNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttttgggcaaatttgggcc
aaaaaacggctaaaaaacgggttttttggactttgtgaaaaattggatca
ttgattttttctgattttttgcatggaattagggtaccatcataggtaaa
agatggctcagggagatttttgcaaaaagatttgttggctcaaaaaacgc
atgtttatctataacaATCACTATTAATAANNNNNNNNNNNNttttttat
aagcacattatcaattacttaggtattagcttttctcgagattagctctt
tcattctttatgattttttgcacaaagatgcgtaactataaaccctcgaa
tgtgactgagcccgattttcgaaaaaaaatgtttttgggcaaatttgtNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttctgaatgattgt
ttaacgttcatgctcacgtagatatcaattatatatgtgttaaatgcata
accaggtaggtccataaaagtatcacttgttttcttaaatgttggccccc
tcactcgAAATGGTTCGCCGGGGCCCATGAATTAAAGTAAGCTCTGTTTT
CTAACGCGTTTGAAATAAATTAATATTCTAAAGATCAGTTGAGAAAATCT
CATAAGCTATATACTATGTATATAAACACAcccatgtgtcacagacccgc
tgggacctcagccccactggaaaatttggccgaaatttcgtccccggtac
tGAAAATACCGCAAGATTTCAgctttcagccccactgggaaattgacttt
gattacatccccattcaaatttcattgtaaaaactcatcccactggattt
ttcaaGGCTTCGAACAAAAGAatctctatccccattgggattacAATGGA
GAAATTTATCCCCCCTGTGAGAAAAAATTTCaccgaggctgtgagacagg
ggtgtataaacaTGAGAGCTTAAAACATGATCAGCTATCCAGGAGAGAAT
GCATTTCCTTTTAATTTTTAGGTTCATCACGAGAGTACATTTTTGTTGAC
GGTGGGTGCCAATGTCGTTAACAAAACTATCGCTGCAAATCAAGATTGGC
TTGAGTAAGTACGCAAGTATTTTTATaagatgattttaattttttgagtt
ttaagcctaaaagagGCCCCCTagtcacctttcaaatcacgcaatcacgc
aaaaaaaattccaaatcacgttatcacgagtcggatcacgcaatcacgca
ctttaaaattttaaatcatgaaatcacgaacttgaaaaaaaaggccagtc
acgccatcacgaaaaccgctaaGAGGGCctcctaaaaatgttcttaactt
tacCGTTAGGTTAATGTTTTTGCtcaatttcctaggaaattgggtgtttt
agagaccttgaaatgttcttaattctTCCTTTATATTtttactcttataa
aaaaaacgcgaAGTTGATGCAAGGCTCGGTTTTAgttattctttaaaaaa
ttgtccTTTTTACCATTTCCACGCATGGAGGGCGTTTCTGAAATTTCTTG
TATCATAGCGAAGTGTGTCTTATGAGATCGATCTTTATAGAGTTTCTTGA
AATGGGACAAAGAACGATTATTTCAATCATTAATGAAGTTAAGTATCGGT
AGAtattcaaagatttataaaggccgaagggctagatgtcgtgctttagc
tgaaaagtgtgccgaggtcaggtagaaaatcctacctaggtcacgtgaca
ttgcaatagaatttcagcgcttgaccaataagaagcttcgcaggttttcg
aaaacaatatagcagcaatattttttgtgatattcactttttttgcttgg
aagagcacgacatctagcttttcgggctttacagaaatctatgTAGATAT
TTCGTATCagcctgtagaaaagtgctGTAGCGTGAACGAAGGCTAGAGGA
AACACGTTGGTCATCGCAAACTATCTATCGATACTTAACCCCGCTATTTT
AATCTCGAATGATAAAGAACAAGGAAGTTTCAACGAATCGTTTACAggat
ttttcatcttcttttttataGTTCATACAACCTAAATGAAGAGCAAGTTC
GACAATACATGGATCACTGGATGGAAGAAGGCTACCACATGGCAAGAAAA
AGAGTTAAAGGTttggttttttaaaaaaatacacgcTTTCATTATGAGCA
AATTCTTGTGAGCCtcattatgcttagcaaaatgaattttttgagcATCG
AATATACTTATGTTATGCTGATGTAATTAATTTTGCAAGTCACATATTat
gcatttttttaaacatatgCTTTATAGGCAACGCTTGAACTTTTCCTAGA
TTTGAGCAACATATCCTTAAATTGACACATATGTGGAGCAATGTAAATCG
tgtatttttgtttacaataaTTGCTTACTTGCTTACTCAGCATTATTCAA
ACACAAATAAAACAATTACAgtaaactctctctaattcaaacttctatta
ttcaaatcgttttataattcgaactaattctcgTCAAAGGGAAACCCCTA
CAAaattctttctataatttgaatctttctgtaattcgaactaatgaGAT
TCCcggttcgagttcgaattagcgagagttaaagataattaaaaaatttt
taaagggGCATTCTCATCCTTTATCGAAACTAACGATACAACCACGACAG
ACCATCTGGAAGCTGAACTCACTGTCTTCATGGATAAACTTTATGAGGAG
TGGCTGAATTTGGTACGTAAAATTATTAGTATTACCTTGAATACTCTTGA
TCTTGGATTTTATAATATTTGAGTATTTGTTTTGACTGATTGAATTACAA
TTTCTCTCTTGCTCTGACATTTTGTAATGAGCTGTAAATACTTCTAATTC
TAATAAACATTAAATATGTGTACTTTAAGTGCCTAATATCCGGTAAGTGG
GGGTTATTAATGTTTCGGTTTTTCCAACCCTCTCCCCCGGACCTTAGGAC
CCCCTCCCGTGTATAGGTTTTAGCTGTCAAAAGAACAgttccttattttg
ctctaaatagcctggttCTAGTCTATAATTACCTCATTTTACCTCATATT
TAGAGGTACAAAATCCAACTCCCGGCAATTAGGCCTCCTGTTGATcgaaa
tttgaagatttttcaaagtgcCTCCTCCCACCCTCAGCTTATTTAGCCAC
acatcaaaatgttttttaacgAGGAGCTTTAACTCTGTCGTTGCAACCTA
TTCTTCAGAATCCAAAAGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001414XLOC_001414Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002602-exon-sc0000021-1491911889:178542..178742TCONS_00002602-exon-sc0000021-1491911889:178542..178742Clytia hemisphaericaexon
TCONS_00002602-exon-sc0000021-1510915933:178542..178742TCONS_00002602-exon-sc0000021-1510915933:178542..178742Clytia hemisphaericaexon
TCONS_00002602-exon-sc0000021-1575043694:178542..178742TCONS_00002602-exon-sc0000021-1575043694:178542..178742Clytia hemisphaericaexon
TCONS_00002602-exon-sc0000021-1491911889:184080..184592TCONS_00002602-exon-sc0000021-1491911889:184080..184592Clytia hemisphaericaexon
TCONS_00002602-exon-sc0000021-1510915933:184080..184592TCONS_00002602-exon-sc0000021-1510915933:184080..184592Clytia hemisphaericaexon
TCONS_00002602-exon-sc0000021-1575043694:184080..184592TCONS_00002602-exon-sc0000021-1575043694:184080..184592Clytia hemisphaericaexon
TCONS_00002602-exon-sc0000021-1491911889:185524..185737TCONS_00002602-exon-sc0000021-1491911889:185524..185737Clytia hemisphaericaexon
TCONS_00002602-exon-sc0000021-1510915933:185524..185737TCONS_00002602-exon-sc0000021-1510915933:185524..185737Clytia hemisphaericaexon
TCONS_00002602-exon-sc0000021-1575043694:185524..185737TCONS_00002602-exon-sc0000021-1575043694:185524..185737Clytia hemisphaericaexon
TCONS_00002602-exon-sc0000021-1491911889:186188..186785TCONS_00002602-exon-sc0000021-1491911889:186188..186785Clytia hemisphaericaexon
TCONS_00002602-exon-sc0000021-1510915933:186188..186785TCONS_00002602-exon-sc0000021-1510915933:186188..186785Clytia hemisphaericaexon
TCONS_00002602-exon-sc0000021-1575043694:186188..186785TCONS_00002602-exon-sc0000021-1575043694:186188..186785Clytia hemisphaericaexon
TCONS_00002602-exon-sc0000021-1491911889:187500..187656TCONS_00002602-exon-sc0000021-1491911889:187500..187656Clytia hemisphaericaexon
TCONS_00002602-exon-sc0000021-1510915933:187500..187656TCONS_00002602-exon-sc0000021-1510915933:187500..187656Clytia hemisphaericaexon
TCONS_00002602-exon-sc0000021-1575043694:187500..187656TCONS_00002602-exon-sc0000021-1575043694:187500..187656Clytia hemisphaericaexon
TCONS_00002602-exon-sc0000021-1491911889:188481..188585TCONS_00002602-exon-sc0000021-1491911889:188481..188585Clytia hemisphaericaexon
TCONS_00002602-exon-sc0000021-1510915933:188481..188585TCONS_00002602-exon-sc0000021-1510915933:188481..188585Clytia hemisphaericaexon
TCONS_00002602-exon-sc0000021-1575043694:188481..188585TCONS_00002602-exon-sc0000021-1575043694:188481..188585Clytia hemisphaericaexon
TCONS_00002602-exon-sc0000021-1491911889:190913..190995TCONS_00002602-exon-sc0000021-1491911889:190913..190995Clytia hemisphaericaexon
TCONS_00002602-exon-sc0000021-1510915933:190913..190995TCONS_00002602-exon-sc0000021-1510915933:190913..190995Clytia hemisphaericaexon
TCONS_00002602-exon-sc0000021-1575043694:190913..190995TCONS_00002602-exon-sc0000021-1575043694:190913..190995Clytia hemisphaericaexon
TCONS_00002602-exon-sc0000021-1491911889:191963..192051TCONS_00002602-exon-sc0000021-1491911889:191963..192051Clytia hemisphaericaexon
TCONS_00002602-exon-sc0000021-1510915933:191963..192051TCONS_00002602-exon-sc0000021-1510915933:191963..192051Clytia hemisphaericaexon
TCONS_00002602-exon-sc0000021-1575043694:191963..192051TCONS_00002602-exon-sc0000021-1575043694:191963..192051Clytia hemisphaericaexon
TCONS_00002602-exon-sc0000021-1491911889:192547..192653TCONS_00002602-exon-sc0000021-1491911889:192547..192653Clytia hemisphaericaexon
TCONS_00002602-exon-sc0000021-1510915933:192547..192653TCONS_00002602-exon-sc0000021-1510915933:192547..192653Clytia hemisphaericaexon
TCONS_00002602-exon-sc0000021-1575043694:192547..192653TCONS_00002602-exon-sc0000021-1575043694:192547..192653Clytia hemisphaericaexon
TCONS_00002602-exon-sc0000021-1491911889:193150..193161TCONS_00002602-exon-sc0000021-1491911889:193150..193161Clytia hemisphaericaexon
TCONS_00002602-exon-sc0000021-1510915933:193150..193161TCONS_00002602-exon-sc0000021-1510915933:193150..193161Clytia hemisphaericaexon
TCONS_00002602-exon-sc0000021-1575043694:193150..193161TCONS_00002602-exon-sc0000021-1575043694:193150..193161Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:178542..193161 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.8707	13.2502	49.2257	52.0282	3.06799	2.70827	4.46916	3.36621	3.85084	3.84986	7.39417	2.96821	5.16618	5.64059	6.9623	7.91625	5.56847	5.61872	6.5273	4.74817	5.5836	5.30665	2.91331	4.78827	17.9849	15.2222	1.15285	1.04	1.00681	1.28534
Blast
[Close]
BLAST of TCONS_00002602 vs. Swiss-Prot (Human)
Match: TM245 (Transmembrane protein 245 OS=Homo sapiens GN=TMEM245 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.353e-18
Identity = 69/240 (28.75%), Postives = 112/240 (46.67%), Query Frame = 1 
Query:  271 DKALKSAFYNTASFVFAIISGIILLNTYFVLHPFLRPLIWASLAGAFIFPFKRNATKIVHEWLLDLQVDKTPSIVGMMVLPAKVVSNAANTLG--WVIKSYQRLLFIVFTAYVLFNLWLHTYFFAWAFQIFSSCHMFLSTLLALFSQKLIILAFVLGYIVLLFNYKKRDNQTFMTVISMSVWSVLALHLATYAGSLQIPISLLFLAIMGRALYLSHYGKLPESIMEDDTTCYEHPSESVE 984
            DK +K AFYNT + +F  +     +  YF+L  FLRPL+WA L G F+ PFK + T++   WL  L    TP ++  ++LP   V      LG   + +    LL       +     L +Y       + ++    +   L  FS  L I   V+GY++ +        + ++  +S+ VW +L  HLA+ AGS +IP+   FL I+    +L   G L E     +++  E P + + 
Sbjct:   47 DKPIKQAFYNTGAVLFVCLCCGAAVLVYFILEAFLRPLLWAVLCGTFLHPFKSSLTRLGRHWLQRLHRAHTPIVLAALLLPLCFVDYGVEALGEQALRRRRLLLLLGAGGPLLYGLYCLGSYLGVQVLLVHAAT--LICRGLDYFSS-LWIWTLVVGYVLTVSFKWNASTERYLRAVSIPVWIILLFHLASLAGSWRIPV---FLVIV----FLMSVGTLYEKQNGKESSGAELPGQVIS 276
The following BLAST results are available for this feature:
BLAST of TCONS_00002602 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TM2453.353e-1828.75Transmembrane protein 245 OS=Homo sapiens GN=TMEM2... [more]
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