TCONS_00012516-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00012516-protein
Unique Name	TCONS_00012516-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	521

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00012516-protein ID=TCONS_00012516-protein|Name=TCONS_00012516-protein|organism=Clytia hemisphaerica|type=polypeptide|length=521bp
MEVKIEDEIQNDPSRFKKVTTKRLVFIEYPGFIKNVDKMLATLGGEEKIS
ETYRSGKQRLQMTYRPEDLNAHNACADLLPFTGLLLKVRRRRKKGTDEFE
YEQDIVGVSRDRYRFQTLMDYQYLTPEPLWNYFKSIHTSELGNTDFPPYF
APPVFARLDSAGVYQYKPDLVTGIKTVAKAPEIGIDSIRKRRHTESMAAL
YSSADVPSKPTEKACTIIENLNKGPDADAIKQLELMFNERPLWSKLAISC
LVDVTPERLKKVLQYFAYYWLSGPWRTLWCRMGYDPRKDPKAKRYQMVEF
RLRRSKENKKCYKMMVPARRSNKDYLPRNLRNIVSRAPASKSVLAACNEP
ENKEEGDKEPYIFHPNKMIHSRSMMLQLCDIHDPAVQKIIVENDGMETRC
DEREGWFPQGTMGRIRNEMTKTVDAYFERQYEKQKSENLSSDKTGGGEAG
VHSDVQGEGGVVKEEERFREGALYDEDMYERDTEPPSSTQMLSYTQMLQG
DDDYSMDTGQFYDEEEFNVYA

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_007032	XLOC_007032	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00012516	TCONS_00012516	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019136	TF_IIIC_su-5

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019136	Transcription factor IIIC, subunit 5	PFAM	PF09734	Tau95	coord: 25..301 e-value: 7.3E-59 score: 199.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 432..490

Blast

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BLAST of TCONS_00012516-protein vs. Swiss-Prot (Human)
Match: TF3C5 (General transcription factor 3C polypeptide 5 OS=Homo sapiens GN=GTF3C5 PE=1 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 1.547e-70
Identity = 154/466 (33.05%), Postives = 235/466 (50.43%), Query Frame = 0

Query:   22 KRLVFIEYPGFIKNVDKMLATLGGEEKISETYRSGKQRLQMTYRPEDLNAHNACADLLPFTGLLLKVRRR--RKKGT------DEFEYEQDIVGVSRDRYRFQTLMDYQYLTPEPLWNYFKSIHTS-------------ELGNTDFPPYFAPPVFARLDSAGVYQYKPDLVT--GIKTVAKAPEIGIDSIRKRRHTESMAALYSSADVPSKPTEKACTIIENLNKGP-DADAIKQLELMFNERPLWSKLAISCLVDVTPERLKKVLQYFAYYWLSGPWRTLWCRMGYDPRKDPKAKRYQMVEFRLRRS-KENKKCYKMMVPARRSNKDY-LPRNLRNIVSR-----------APASKSVLAACNEPENKEEGDKEPYIFHPNKMIHSRSMMLQLCDIHDPAVQKIIVENDGMETRCDEREGWFPQGTMGRIRNEMTKTVDAYFERQYEKQKSENL--SSDKTGGGE 448
            +R+V +EYPG +++V KML TLGGEE +S  Y    +RL++ +RP+D   H  CA+    + LLL++R+R  R+KG        E  ++ +I+G+    Y+FQ + D+QYL    +       HTS                + + P Y  PP+F+RLD+   Y Y+P+     G      + E  I   R RR   ++   +   +VP +P E A      +   P D    ++L  +F+ RP+WS+ A+   + V P++LK +L + AYY ++GPWR+LW R GYDPRK+P AK YQ+++FR+R   K       + V A+RS  +Y LP  ++   S+            P+  S   A     +K +     YIF    +   R M  QLCD++   +QKII  NDG E  C ER+GW    T   +R+ M+  +     RQ  + K   L  SS K  GG+
Sbjct:   22 RRMVCVEYPGVVRDVAKMLPTLGGEEGVSRIYADPTKRLELYFRPKDPYCHPVCANRFSTSSLLLRIRKRTRRQKGVLGTEAHSEVTFDMEILGIISTIYKFQGMSDFQYLA---VHTEAGGKHTSMYDKVLMLRPEKEAFFHQELPLYIPPPIFSRLDAPVDYFYRPETQHREGYNNPPISGENLIGLSRARRPHNAIFVNFEDEEVPKQPLEAAAQTWRRVCTNPVDRKVEEELRKLFDIRPIWSRNAVKANISVHPDKLKVLLPFIAYYMITGPWRSLWIRFGYDPRKNPDAKIYQVLDFRIRCGMKHGYAPSDLPVKAKRSTYNYSLPITVKKTSSQLVTMHDLKQGLGPSGTS--GARKPASSKYKLKDSVYIFREGALPPYRQMFYQLCDLNVEELQKIIHRNDGAENSCTERDGWCLPKTSDELRDTMSLMI-----RQTIRSKRPALFSSSAKADGGK 477

The following BLAST results are available for this feature:

BLAST of TCONS_00012516-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00012516-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TF3C5	1.547e-70	33.05	General transcription factor 3C polypeptide 5 OS=H...	[more]

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TCONS_00012516-protein (polypeptide) - C. hemisphaerica