TCONS_00011699-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00011699-protein
Unique Name	TCONS_00011699-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	318

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00011699-protein ID=TCONS_00011699-protein|Name=TCONS_00011699-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
MNSLYNQTPIVQSLHGPKECKIFLKLENTQPSGSFKTRGISYHCTKLKER
GCKFFVSSSGGNAGLAVAYSGRVLNITVCVFVPTTTPNHVIERLRNEGAE
VKQKGDVWDETNKYAIEFVESMKDKNASLVHPFNHPEIWTGHSTIVSELK
EQLIDKPSVIVLSVGGGGLLCGVVEGLQKVGWDHVPVIACETFGADSLNQ
AMKNNKLTTLPAIKSIAKSLGALTVAQEALDWTNKHKILPVQVTDQETIS
ACYKYLNDFKSLVEPACGASLTLMYSDILQKLLEQGKLSNIDSVVIIVCG
GHSLTIDNLLAWKKEFNV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_006569	XLOC_006569	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00011699	TCONS_00011699	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001926	TrpB-like_PLP-dep

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001926	Tryptophan synthase beta subunit-like PLP-dependent enzyme	PFAM	PF00291	PALP	coord: 4..300 e-value: 1.8E-61 score: 208.0
IPR001926	Tryptophan synthase beta subunit-like PLP-dependent enzyme	SUPERFAMILY	53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes	coord: 4..310
None	No IPR available	GENE3D	3.40.50.1100		coord: 35..85 e-value: 1.0E-15 score: 57.2
None	No IPR available	GENE3D	3.40.50.1100		coord: 86..317 e-value: 6.3E-45 score: 152.8

Blast

[Close]

BLAST of TCONS_00011699-protein vs. Swiss-Prot (Human)
Match: SDHL (L-serine dehydratase/L-threonine deaminase OS=Homo sapiens GN=SDS PE=1 SV=2)

HSP 1 Score: 243.047 bits (619), Expect = 8.920e-79
Identity = 153/320 (47.81%), Postives = 212/320 (66.25%), Query Frame = 0

Query:    4 LYNQTPIVQSLHGPKEC--KIFLKLENTQPSGSFKTRGISYHCTKLKERGCKFFVSSSGGNAGLAVAYSGRVLNITVCVFVPTTTPNHVIERLRNEGAEVKQKGDVWDETNKYAIEFVESMKDKNASLVH--PFNHPEIWTGHSTIVSELKEQLIDKPSVIVLSVGGGGLLCGVVEGLQKVGWDHVPVIACETFGADSLNQAMKNNKLTTLPAIKSIAKSLGALTVAQEALDWTNKHKILPVQVTDQETISACYKYLNDFKSLVEPACGASLTLMYSDILQKLLEQGKL-SNIDSVVIIVCGGHSLTIDNLLAWKKEFNV 318
            L+ +TPI  S+   K     ++LK+++ QPSGSFK RGI + C +  ++GC  FV SS GNAG+A AY+ R L +   + VP+TTP   IERL+NEGA VK  G++ DE    A E  +++   N   V+  PF+ P IW GH++IV ELKE L +KP  I LSVGGGGLLCGVV+GLQ+VGW  VPVIA ETFGA S + A    KL +LP I S+AK+LG  TV  +AL    +H I    ++DQE ++A  K+++D K LVEPACGA+L  +YS ++QKL  +G L + + S+V+IVCGG ++++  L A K++  +
Sbjct:    7 LHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPSTTPALTIERLKNEGATVKVVGELLDE----AFELAKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQGLQEVGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGAQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHVIQKLQLEGNLRTPLPSLVVIVCGGSNISLAQLRALKEQLGM 322

The following BLAST results are available for this feature:

BLAST of TCONS_00011699-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00011699-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SDHL	8.920e-79	47.81	L-serine dehydratase/L-threonine deaminase OS=Homo...	[more]

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TCONS_00011699-protein (polypeptide) - C. hemisphaerica