TCONS_00011552-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011552-protein
Unique NameTCONS_00011552-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1222

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011552-protein ID=TCONS_00011552-protein|Name=TCONS_00011552-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1222bp
MSMVSVSEVHSLEGQCISGCNASLTYQWYLKVLSETGYYVQIDESVLLTM
VTTPLSSFFYSARANAYQGDTWYMLFFRAYRSEHVFGETSMKFFVNNAPE
NGFCSIAPKVGTFMVDFFNLSCHGWQDLHSPLSYRFYTKMDNVLSEIYQG
WLSNVSKQLALKTGGDMSDSENMEQTIYFEIIDGVGARTIVNDTVQVNLP
PDIDSVVNEVSDTLTGENSPLDVLSQSGDYLELSRQVQIYGSLFNAPRDK
DQNNDTQKGARVQLRSLLYDKVSSIKMKSTKDINLIAGPCGEVLQNPDEI
SDNTRKKVQSKVDEMLGVLESDEQAPRSVVLGALPGVLSMTNKVAESAAN
LVSVEREVDGKVDEVVKKQNLDNSRRQVKNARQQMNKTSEILKHYSTPGA
GTIVIETKDQALGLAKILSNEKEASSMAGGVGLTFNPGLYRSEQSEDDND
FVTVKVLKFANLYSFDQSSLRVNSAVTGINFENSQTNGPMEVKDASEPLK
IIIENREPKQSSFANNSSENSNSTGDGLTANVFRMEVGDNGEQWSFHAVD
IHNESFRAVINPQNTSLRLTVYMRENNRPSPDKYLFRWIVPDSSSCDWLN
RTGFVNRTVDVLRDQPEDYSCRLHPFSVFISDELELDGKFILGVHYLPSM
QQEEKQQNTSPAKKRRRRRNTPSKDSDDSIIDLDLVDDEFCVTIKPPPPT
PAPTLPPGEFVTSIPVITNDSVTYNLTITKAKCLFWDEMNETWSSNGCFV
DAETTPERTVCLCTHLTDFGGDVMVAPNPIDMNAVFAGLNNLGDNLGVLM
VIISLFLIYIILGVWVSKKDRKDEIERQMVHVDCTNGRPIKQTLIITVIT
GAGNGSGTTARVYGLLRGSKGEMVIPLNTSENTLFKTRSTVILKITLSRE
IGEVDFFRVFHDNGGRSPSWYLRSILVVDTETRNEFPFVCDTWLSVESVD
GQIDRTLVVATEKDLKSFHLIFASKVSKGLLDGHIWFSIFLRPAQSSFTR
FRRLTACLALIFLTMLTNAMFFGASDAPGGRKIVYLGNFKVNLTGVMIGI
QSSIIIIPPSVIIVEIFRRLKPKKKQKVKEMEVVEIAGDESYLDKEENED
EMNNSMVFLKNDQNTKKKEKKKESKPFMLPHGFKYVAYFVVFASVSSSAT
VCFFYSMMWGPRRSNEWLVSMFTGFFQSVIVIQPVKAVFVAVLFAAILRK
PVKHDVTLLDDDDKIEEERNEQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006474XLOC_006474Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011552TCONS_00011552Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000203GPS
IPR001024PLAT/LH2_dom
IPR002859PKD/REJ-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 368..391
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 506..527
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 651..679
IPR000203GPS motifSMARTSM00303GPS_3coord: 729..778
e-value: 2.0E-10
score: 50.6
IPR000203GPS motifPFAMPF01825GPScoord: 732..769
e-value: 3.2E-9
score: 37.2
IPR000203GPS motifPROSITEPS50221GPScoord: 730..779
score: 13.123
IPR001024PLAT/LH2 domainSMARTSM00308LH2_4coord: 842..960
e-value: 2.6E-5
score: 29.5
IPR001024PLAT/LH2 domainGENE3D2.60.60.20coord: 844..968
e-value: 5.2E-24
score: 84.2
IPR001024PLAT/LH2 domainPFAMPF01477PLATcoord: 846..952
e-value: 1.2E-14
score: 54.8
IPR001024PLAT/LH2 domainPROSITEPS50095PLATcoord: 842..958
score: 27.666
IPR001024PLAT/LH2 domainSUPERFAMILY49723Lipase/lipooxygenase domain (PLAT/LH2 domain)coord: 846..947
IPR002859PKD/REJ-like domainPFAMPF02010REJcoord: 8..231
e-value: 1.7E-22
score: 79.7

Blast
[Close]
BLAST of TCONS_00011552-protein vs. Swiss-Prot (Human)
Match: PK1L2 (Polycystic kidney disease protein 1-like 2 OS=Homo sapiens GN=PKD1L2 PE=1 SV=4)

HSP 1 Score: 229.95 bits (585), Expect = 6.317e-61
Identity = 125/354 (35.31%), Postives = 205/354 (57.91%), Query Frame = 0 
Query:  722 VTYNLTITKAKCLFWDEMNETWSSNGCFVDAETTPERTVCLCTHLTDFGGDVMVAPNPIDMNAVFAGLNNLGDNLGVLMVIISLFLIYIILGVWVSKKDRKDEIERQMVHVDCTNGRPIKQ-TLIITVITGAGNGSGTTARVYGLLRGSKGEM-VIPLNTSENTLFKTRSTVILKITLSREIGEVDFFRVFHDNGGRSPSWYLRSILVVDTETRNEFPFVCDTWLSVESVDGQIDRTLVVATEKDLKSFHLIFASKVSKGLLDGHIWFSIFLRPAQSSFTRFRRLTACLALIFLTMLTNAMFFGASDAPGGRKIVYLGNFKVNLTGVMIGIQSSIIIIPPSVIIVEIFRRLKPK 1073
            +T  +T   + C+FWDE+ ETW  +GC V   T+P +T CLC HLT FG   +V  N I+++          DN  V+  +  L ++Y+++ +W  +KD +D+ + ++  ++  +  P  Q   ++TV TG   G+ T+++V   L G  GE     L   +  +F+  +     ++    +GE+   R++HDN G  PSWY+  +LV D     ++ F+C++WLS+   D  +D+   VATE+D K F  +F  K S G  DGHIW+SIF R A+SSFTR +R++ C +L+  TMLT+ MF+G    P  +K+  LG  +     VMIG++SSI++ P +++IV+IF+  +P+
Sbjct: 1271 LTVGITTFLSHCVFWDEVQETWDDSGCQVGPRTSPYQTHCLCNHLTFFGSTFLVMSNAINIHQTAELFATFEDNPVVVTTVGCLCVVYVLVVIWARRKDAQDQAKVKVTVLE--DNDPFAQYHYLVTVYTGHRRGAATSSKVTVTLYGLDGEREPHHLADPDTPVFERGAVDAFLLSTLFPLGELRSLRLWHDNSGDRPSWYVSRVLVYDLVMDRKWYFLCNSWLSINVGDCVLDKVFPVATEQDRKQFSHLFFMKTSAGFQDGHIWYSIFSRCARSSFTRVQRVSCCFSLLLCTMLTSIMFWGVPKDPAEQKM-DLGKIEFTWQEVMIGLESSILMFPINLLIVQIFQNTRPR 1621
The following BLAST results are available for this feature:
BLAST of TCONS_00011552-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PK1L26.317e-6135.31Polycystic kidney disease protein 1-like 2 OS=Homo... [more]
back to top