TCONS_00010887-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00010887-protein
Unique Name	TCONS_00010887-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	415

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00010887-protein ID=TCONS_00010887-protein|Name=TCONS_00010887-protein|organism=Clytia hemisphaerica|type=polypeptide|length=415bp
EKSIKILKLRFSMLSTLQRRSINTFHSTRCCCSLLQSQNYGYPKQPIRSH
ISTSQPIKSRHSNFQPIRNQLSVYQPISFQLRTSSLSVSTTWSSIRCYSQ
SLNDGKDDQNVQKQRPKRITTFQKVRYMVDIFWAGCKALFRDVRLALKTR
RKLGLYHVRDYSRLTREELRHLRQTRQDVVKTFPVALLFMVPFIGYTAPI
LAYFYPRQLLSQQFWHPDQKKEFVLEEYEKRSQYYLPLIKECGITAKEIV
NKDLLNFCLKTIDGSYPENEELLHFENVFSQHEDFSLQKMPRYHLVKICK
CWLIPTGWYLPRWYLINVLNKRILKLHEDDVLILRDGIDTLTPECIEQAV
HVRGLDEASLNDESKKFWLKDWIELSSNVKGKDISFLAHSAVFKAANFEM
LQQNGSKVVDQVESR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_006114	XLOC_006114	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00010887	TCONS_00010887	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011685	LETM1
IPR033122	LETM1_RBD

Vocabulary: **Molecular Function**
Term	Definition
GO:0043022	ribosome binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0043022	ribosome binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011685	LETM1-like	PFAM	PF07766	LETM1	coord: 122..388 e-value: 8.3E-57 score: 192.4
IPR033122	Letm1 ribosome-binding domain	PROSITE	PS51758	LETM1_RBD	coord: 223..415 score: 13.543

Blast

[Close]

BLAST of TCONS_00010887-protein vs. Swiss-Prot (Human)
Match: LTMD1 (LETM1 domain-containing protein 1 OS=Homo sapiens GN=LETMD1 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.602e-32
Identity = 75/287 (26.13%), Postives = 146/287 (50.87%), Query Frame = 0

Query:  122 FQKVRYMVDIFWAGCKALFRDVRLALKTRRKLGLYHVRDYSRLTREELRHLRQTRQDVVKTFPVALLFMVPFIGYTAPILAYFYPRQLLSQQFWHPDQKKEF--VLEEYEKRS--------QYYLPLIKECGITAKEIVNKDLLNFCLKTIDGSYPENEELLHFENVFSQHEDFSLQKMPRYHLVKICKCWLIPTGWYLPRWYLINVLNKRILKLHEDDVLILRDGIDTLTPECIEQAVHVRGLDEASLNDESKKFWLKDWIELSSNVKGKDISFLAHSAVFKAANF 398
            F +   +  IF  G + L+ D + A + +  +  ++++ + +L   E+ HLRQ RQDV K   + ++ + PF  Y   +L Y +PRQLL + FW P Q+ +F  +   + K+S        +  +PLI + G+  +      L + C K   G++P   ++L     FS H    + ++   H+  + +  L+ +  YLP   L + L      +H+ D  + + GI  LT + ++ A ++RGL+   + ++  + WL +W+++S ++K  ++S L H+ V  + N+
Sbjct:   79 FPRFYVLYTIFMKGLQMLWADAKKARRIKTNMWKHNIK-FHQLPYREMEHLRQFRQDVTKCLFLGIISIPPFANYLVFLLMYLFPRQLLIRHFWTPKQQTDFLDIYHAFRKQSHPEIISYLEKVIPLISDAGLRWR------LTDLCTKIQRGTHPAIHDILALRECFSNHP-LGMNQLQALHVKALSRAMLLTS--YLPPPLLRHRLKTHTTVIHQLDKALAKLGIGQLTAQEVKSACYLRGLNSTHIGEDRCRTWLGEWLQISCSLKEAELSLLLHNVVLLSTNY 355

The following BLAST results are available for this feature:

BLAST of TCONS_00010887-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00010887-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LTMD1	2.602e-32	26.13	LETM1 domain-containing protein 1 OS=Homo sapiens ...	[more]

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TCONS_00010887-protein (polypeptide) - C. hemisphaerica