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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010887 ID=TCONS_00010887|Name=TCONS_00010887|organism=Clytia hemisphaerica|type=transcript|length=1970bpRun BLAST on NCBI protein sequence of TCONS_00010887-protein >TCONS_00010887-protein ID=TCONS_00010887-protein|Name=TCONS_00010887-protein|organism=Clytia hemisphaerica|type=polypeptide|length=415bp EKSIKILKLRFSMLSTLQRRSINTFHSTRCCCSLLQSQNYGYPKQPIRSHRun BLAST on NCBI transcript from alignment at sc0000118:217820..235497+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010887 ID=TCONS_00010887|Name=TCONS_00010887|organism=Clytia hemisphaerica|type=transcript|length=17678bp|location=Sequence derived from alignment at sc0000118:217820..235497+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000118:217820..235497+ >TCONS_00010887 ID=TCONS_00010887|Name=TCONS_00010887|organism=Clytia hemisphaerica|type=CDS|length=11232bp|location=Sequence derived from alignment at sc0000118:217820..235497+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00010887 vs. Swiss-Prot (Human)
Match: LTMD1 (LETM1 domain-containing protein 1 OS=Homo sapiens GN=LETMD1 PE=1 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 8.603e-31 Identity = 75/287 (26.13%), Postives = 146/287 (50.87%), Query Frame = 2
Query: 365 FQKVRYMVDIFWAGCKALFRDVRLALKTRRKLGLYHVRDYSRLTREELRHLRQTRQDVVKTFPVALLFMVPFIGYTAPILAYFYPRQLLSQQFWHPDQKKEF--VLEEYEKRS--------QYYLPLIKECGITAKEIVNKDLLNFCLKTIDGSYPENEELLHFENVFSQHEDFSLQKMPRYHLVKICKCWLIPTGWYLPRWYLINVLNKRILKLHEDDVLILRDGIDTLTPECIEQAVHVRGLDEASLNDESKKFWLKDWIELSSNVKGKDISFLAHSAVFKAANF 1195
F + + IF G + L+ D + A + + + ++++ + +L E+ HLRQ RQDV K + ++ + PF Y +L Y +PRQLL + FW P Q+ +F + + K+S + +PLI + G+ + L + C K G++P ++L FS H + ++ H+ + + L+ + YLP L + L +H+ D + + GI LT + ++ A ++RGL+ + ++ + WL +W+++S ++K ++S L H+ V + N+
Sbjct: 79 FPRFYVLYTIFMKGLQMLWADAKKARRIKTNMWKHNIK-FHQLPYREMEHLRQFRQDVTKCLFLGIISIPPFANYLVFLLMYLFPRQLLIRHFWTPKQQTDFLDIYHAFRKQSHPEIISYLEKVIPLISDAGLRWR------LTDLCTKIQRGTHPAIHDILALRECFSNHP-LGMNQLQALHVKALSRAMLLTS--YLPPPLLRHRLKTHTTVIHQLDKALAKLGIGQLTAQEVKSACYLRGLNSTHIGEDRCRTWLGEWLQISCSLKEAELSLLLHNVVLLSTNY 355 The following BLAST results are available for this feature:
BLAST of TCONS_00010887 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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