|
|
Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00009370-protein ID=TCONS_00009370-protein|Name=TCONS_00009370-protein|organism=Clytia hemisphaerica|type=polypeptide|length=829bp
TNLDLALHVVMEVIPEFEEGDDATIIGNLARDRISAAKRNTMLRRRASSS
SSKLLENRHCRQWNTLFCSLIDLNERTYTKNGKDVIMRLQSIIQHDVVNS
SKTATTGVLYLIYERALQEILLKTFPVSGSLINTLTENLSDDIFNKVQPL
IQEHMQSLKTKLQENSPIDGTDVGVVCLLVSIFRIEKMAHQDSQICSVLK
QFIEDTTDYLELVSLEKNFSNDALIVLIFALIWFTQADDSREYDVKKLKT
FARKGHIKYHKTMTIFGRTLLMNTIENMQNFDYNYKLYATSYKKVMAAQK
FLLTGIGQYLTETSFPNDGSGSDSDLSHDQELTNKLSLLKTQDSIEADDV
FNDSPAAESVSSIARLEPEGSSGSDEEQKQETPKTPTRQIYQPPALKRQT
SSTSSDEGDSQKWARRLSQEVKIEKSSLIKEEKIVEDVINIPERYIGRVI
GHEGAIARRLELKSNASIVIGKKAAPARPTTTCLTAHRLVTGALGVRPQM
ATDQVSEEKKKLADAKVKRNTGEKEILTREIILNGTKEQKEKAKDLINEI
INNIVTISVPVKLTVESLLQRFGNKIKTIEAVLNVYIEIEELEDLTVTID
ISGDRKSCSDAKKSILEDLCQFETFPGQMFYIPNAIQSVLKTEVEMLMLF
GTIKDVCNVKINKFGAPNGQAVFISGRFEKVTEAVNIFQATNYELTYALL
QEDNTITADDLIGFIQEKFGRKREVRRKYSKSPTLIRKGDSEDEAIVISD
GEEEEKQPRKRISYSREQLITIGKTCLEFPQDRLEDFMRKDSDADQVIVL
EGNKERLEKVITDLKQNQWGTPFTNLKIK Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0003723 | RNA binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0003723 |
RNA binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 797..817 |
| None | No IPR available | COILS | Coil | Coil | coord: 533..553 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 349..413 |
| None | No IPR available | PROSITE | PS50084 | KH_TYPE_1 | coord: 434..470
score: 8.953 |
| None | No IPR available | CDD | cd00105 | KH-I | coord: 439..473
e-value: 0.00375842
score: 35.2284 |
| IPR004087 | K Homology domain | SMART | SM00322 | kh_6 | coord: 553..620
e-value: 18.0
score: 4.7
coord: 433..552
e-value: 2.5E-8
score: 43.7 |
| IPR004088 | K Homology domain, type 1 | GENE3D | 3.30.1370.10 | | coord: 434..553
e-value: 1.8E-11
score: 43.0 |
| IPR004088 | K Homology domain, type 1 | GENE3D | 3.30.1370.10 | | coord: 554..623
e-value: 1.2E-5
score: 24.7 |
| IPR004088 | K Homology domain, type 1 | PFAM | PF00013 | KH_1 | coord: 438..472
e-value: 2.2E-5
score: 24.1 |
| IPR004088 | K Homology domain, type 1 | SUPERFAMILY | 54791 | Eukaryotic type KH-domain (KH-domain type I) | coord: 432..479
coord: 528..554 |
| IPR004088 | K Homology domain, type 1 | SUPERFAMILY | 54791 | Eukaryotic type KH-domain (KH-domain type I) | coord: 535..617 |
Blast
The following BLAST results are available for this feature:
|
