TCONS_00007000-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007000-protein
Unique NameTCONS_00007000-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length487

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007000-protein ID=TCONS_00007000-protein|Name=TCONS_00007000-protein|organism=Clytia hemisphaerica|type=polypeptide|length=487bp
MKVYHRQKDWHGVQSIFSSSLGLTEQFIYRNAAIKSRTFVSRLSLSNTLN
FHEGCVNTVNFSHSGDFIASGSDDLKICIWDWNNNHNNQPLLAFDSGHHG
NVFQTKFMAHTNDTVVVSCARDGEIRVSYLSSAKDKNQITKKILQHKGSA
HKLSVSKSSPHLLKSAGEDGVVYNIDLRDTTTPQKLLTVRNTKGGKIALY
SIDTNPLNDHEFAVSGRDPFARIYDERMLSEENNGLLDSYCADHLKAPEE
KNFNPPNITCLMYNYNGTELLCSYNDEEIYLFDIKDSSQKDFTHVYKGHR
NSDTVKGVNFFGPRSEYIVSGSDCGHVFLWDKETEEIVNFMKGDEGVVNV
LEPHPTSCILATSGLEHNIKIWSPVGQSFKSNEELDKQVRENAAAREEDR
KHGGGRDLFYLMMMMRRMRRQRQRQRRRAERLAEEQQGDGERTTSTEGEG
EDETTDEVDSDVELSSTDEDEDDEDDDEDSTPMCAQS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003920XLOC_003920Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007000TCONS_00007000Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 415..435
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 420..487
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 42..81
e-value: 3.6E-7
score: 39.8
coord: 334..373
e-value: 0.024
score: 23.8
coord: 182..225
e-value: 39.0
score: 6.9
coord: 289..331
e-value: 0.016
score: 24.4
coord: 87..129
e-value: 8.5
score: 11.1
coord: 238..283
e-value: 14.0
score: 9.7
coord: 136..176
e-value: 54.0
score: 6.1
IPR001680WD40 repeatPFAMPF00400WD40coord: 293..331
e-value: 4.1E-4
score: 21.0
coord: 47..81
e-value: 9.3E-6
score: 26.2
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 49..81
score: 12.48
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 33..375
e-value: 4.4E-50
score: 169.8
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 49..382
score: 19.327
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 42..372

Blast
[Close]
BLAST of TCONS_00007000-protein vs. Swiss-Prot (Human)
Match: DCAF8 (DDB1- and CUL4-associated factor 8 OS=Homo sapiens GN=DCAF8 PE=1 SV=1)

HSP 1 Score: 394.43 bits (1012), Expect = 6.399e-132
Identity = 199/412 (48.30%), Postives = 271/412 (65.78%), Query Frame = 0 
Query:   10 WHGVQSIFSSSLGLTEQFIYRNAAIKSRTFVSRLSLSNTLNFHEGCVNTVNFSHSGDFIASGSDDLKICIWDWNNNHNNQPLLAFDSGHHGNVFQTKFMAHTNDTVVVSCARDGEIRVSYLSSAKD-KNQITKKILQHKGSAHKLSVSKSSPHLLKSAGEDGVVYNIDLRDTTTPQKLLTVRNTKGGKIALYSIDTNPLNDHEFAVSGRDPFARIYDERMLSE-ENNGLLDSYCADHLKAPEEKNFNPPNITCLMYNYNGTELLCSYNDEEIYLFDIKDSSQKDFTHVYKGHRNSDTVKGVNFFGPRSEYIVSGSDCGHVFLWDKETEEIVNFMKGDE-GVVNVLEPHPTSCILATSGLEHNIKIWSPVGQSFKSNEELDKQVRENAAAREEDRKHGGGRDLFYLMMMMRRM 418
            W  + ++    LG + +F+Y   A  +R FV R  L + L  H GCVNT++F+  G ++ASGSDDLK+ +WDW      QP+L F+SGH  NVFQ KF+ ++ D+ +  CARDG++RV+ LS+ +  KN  TK++ QHKG++HKL++   SP    SAGED VV+ IDLR    P   L V   K  K+ LY+I  NP N H+FAV GRD F RIYD+R + E ENNG+L  +C  HL   E K     NITCL+Y+++GTELL SYNDE+IYLF+   S    +   YKGHRN+ TVKGVNF+GP+SE++VSGSDCGH+FLW+K + +I+ FM+GD+ GVVN LEPHP   +LATSGL+H++KIW+P  ++      L   +++N   R+ED  H    DLF   M+   M
Sbjct:  152 WQALPALRERELGSSARFVYE--ACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRR---QPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKN--TKRVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDR-PASKLVVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESK----ANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYVKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAEASTELTGLKDVIKKNKRERDEDSLH--QTDLFDSHMLWFLM 549
The following BLAST results are available for this feature:
BLAST of TCONS_00007000-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DCAF86.399e-13248.30DDB1- and CUL4-associated factor 8 OS=Homo sapiens... [more]
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