TCONS_00006264-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00006264-protein
Unique Name	TCONS_00006264-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	357

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00006264-protein ID=TCONS_00006264-protein|Name=TCONS_00006264-protein|organism=Clytia hemisphaerica|type=polypeptide|length=357bp
LALKMICFHFQGLPGKDGETGEPGKPGSRGEQGEQGLAGAPGVRGQKGTS
GKTGNSGPRGAQGVKGESGIKGIKGELGPSGPEGEKGEKGTKGTSGIPGP
QGSKGSVGPRGPTGPRGQKGRPGRSGGQGPPGLPGANGANGKPGQNGKPG
PPGDEGPMGNPGGQGKRGPKGPPGPQGENGKSGPIGKPGPSGNAGPPGVN
GPPGAMGPMGPRGDPGEPGIAGERGPTGPAGVSGPAGPAGNPGTAGLPGR
KGEVGLKGNRGFQGEKGPPGEPGISGKKGEKGSTGMDGMFGQPGPRGKSG
QKGEPGKDGLPGKRGILGENGRKGDQGNMGGPGPKGVDGPQGPPGPPVSI
LFLFYNC

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_003578	XLOC_003578	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00006264	TCONS_00006264	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008160	Collagen

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008160	Collagen triple helix repeat	PFAM	PF01391	Collagen	coord: 198..255 e-value: 7.9E-10 score: 38.3 coord: 255..312 e-value: 4.5E-8 score: 32.6 coord: 12..67 e-value: 2.2E-9 score: 36.8 coord: 291..346 e-value: 3.0E-8 score: 33.2
None	No IPR available	GENE3D	2.160.20.50		coord: 254..313 e-value: 0.0016 score: 17.7 coord: 180..253 e-value: 7.0E-4 score: 18.9 coord: 80..144 e-value: 9.0E-5 score: 21.7 coord: 5..79 e-value: 3.3E-4 score: 19.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..347

Blast

[Close]

BLAST of TCONS_00006264-protein vs. Swiss-Prot (Human)
Match: CO4A1 (Collagen alpha-1(IV) chain OS=Homo sapiens GN=COL4A1 PE=1 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 3.768e-35
Identity = 158/369 (42.82%), Postives = 193/369 (52.30%), Query Frame = 0

Query:   11 QGLPGKDGETGEPGKPGSRGEQGEQGLAGAPGVRGQKGTSGKTGNSGPRGAQGVKGESGIKGIKGELGPSGPEGEKGEKGTKGTSGIPGPQGSKGSV------GPRGPTGPRGQKGRPGRSGGQGPPGLPGANGANGKPGQNGKPGPPGDEGPMGNPGGQGKRGPKGPPGPQGENGKSGPIGKPGPSGNAGPPGVNGPPGAMGPMGPRGDPGE--------PGIAGERGPTGPAGVSGPAGPAGNPGTAGLPGRKGEVGLKGNRGFQGEKGPPGEPGISGKKGEKGSTGMD---------GMFGQPGPRGKSGQKGEPGKDGLPGK-----------RGILGENGRKGDQGNMGGPGPKGVDGPQGPPG 345
            QGLPG  G++G PG PG +G  G  G  G+ G  G  GT G+ G+ GP GA G+ GE G  G  G    SGP G+ G KG KG  G+PG  GS   V      G +G  G +GQ G  G  G +G PG PG       PG++G+ G PG  GP G+PG  G  G  G PGP+G  G  G  G PG  G  G PG  G PG  G  G +G+ G+        PG+ GE+G  G AG  G  G  G  G+ G+PG  G  GLKG+    G  G PG PG+ G+KG+KG  G+D         G+ G PGP G +GQKGEPG DG+PG            RG  G  G KGD+G+ G  G  G+ G  G PG
Sbjct:  848 QGLPGITGQSGLPGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVGAPGLPGEKGDHGFPGS---SGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQIGPIGEKGSRGDPGTPGV------PGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLPGDKGAKGEKGQAGPPGIGIPGLRGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPGSPGLKGS---PGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSAGEKGEPGLPGRGFPGFPGAKGDKGSKGEVGFPGLAGSPGIPG 1204

HSP 2 Score: 109.383 bits (272), Expect = 5.584e-26
Identity = 151/391 (38.62%), Postives = 187/391 (47.83%), Query Frame = 0

Query:   12 GLPGKDGETGEPGKPGSRGEQGEQGLAGAPGVRGQKGTSGKTG------------NSGPRGAQGVKGESGIKGIKGELGPSGP-----EGEKGEKGTKGTSGIPGPQGSKGSVGPRGPTGPRGQKGRPGRSGGQGPPGLPGANGANGKPGQNGKPGPPGDEGPMGNPGGQGKRGPKGPPGPQGENGKSGPIGKPGPSGNAGPPGVNGPPGAMGPMGPRGDPGEPGIAGERGPTGPAGVSGPAGPAGNPGTAG------------------LPGRKGE--------------------------VGLKGNRGFQGEKGPPGEPGISGKKGEKGSTGMDGMFGQPGPRGKSGQKGEPGKDGLPGKRGILGENGRKGDQGNMGGPGPKGVDGPQ 341
            G+PGKDG+ G+PG+PG +G+ G  G  GAPG+ G KG+ G  G              GP+G+ G+ G+ G KG KG+ GP G       GEKG++G  G  G PG +G KGS+G  G  G  G KG PG  G  G PGLPG  G  G PG +G PG  G+ G  G PG         P GP G+ G+ G  G PG +G  G PG+ G          RG PG PG  G++G  G  G  G AG  G PG+ G                   PG   E                           G+ G +G +G  G PG PG+ G KG+ G  GM G+ G PG  G  G  G PG  G  G +G+ G  G KGDQG+ G PG KG+ GP 
Sbjct:  975 GVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLPGDKGAKGEKGQAGPPGIGIPGLRGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPG---------PTGPAGQKGEPGSDGIPGSAGEKGEPGLPG----------RGFPGFPGAKGDKGSKGEVGFPGLAGSPGIPGSKGEQGFMGPPGPQGQPGLPGSPGHATEGPKGDRGPQGQPGLPGLPGPMGPPGLPGIDGVKGDKGNPGWPGAPGVPGPKGDPGFQGMPGIGGSPGITGSKGDMGPPGVPGFQGPKGLPGLQGIKGDQGDQGVPGAKGLPGPP 1346

HSP 3 Score: 93.2041 bits (230), Expect = 1.522e-20
Identity = 147/372 (39.52%), Postives = 181/372 (48.66%), Query Frame = 0

Query:   10 FQGLPGKDGETGEPGKPGSRGEQGEQGLAGAPGVRGQKGTSGKTGNSGPRGAQGVKGESGIKGIKGELGPSGPEGE--------------------------------KGEKGTKGTSGI--PGPQGSKGSVGPRGPTGPRGQKGRPGRSGGQGPPGLPGANGANGKPGQNGKPGPPGDEGPMGNPGGQGKRGPKGPPGPQGENGKSGPIGKPGPSGNAGPPGVNGPPGAMGPMGPRGDPGEPGIAGERGPTGPAGVSGPAGPAGNPGTAGLPGRKGEVGLKGNRGFQGEKGPPGEPGISGKKGEKGSTGMDGMFGQPGPRGKSGQKGEPGKDGLPGKRGILGENGRKGDQGNMGGPGPKGVDGPQGPPGPP 347
            F GLPG  G  G+ G+PG  G  G +GL G PG+ G  G  G  G  G  G  G  G  G++GI+GE GP G  G                                 KGEKG  G  G+  PGP+G KG+ G  G TG   Q G PG  G QG PG+PG  G+ G+ G  G PG PG  GP+G PG  G++G  G PG       SGP G PG  G+ G  G+ G PG+M  +      G+ G  GE+G  GP G  G  G   +PGT G+PG+ G+ G  G      + GP G+PGISG  G  G          PGP+G  G  G PG    PG++G+    G  G QG+ G PG KG  G +G  GPP
Sbjct:  718 FNGLPGNPGVQGQKGEPGV-GLPGLKGLPGLPGIPGTPGEKGSIGVPGVPGEHGAIGPPGLQGIRGEPGPPGLPGSVGSPGVPGIGPPGARGPPGGQGPPGLSGPPGIKGEKGFPGFPGLDMPGPKGDKGAQGLPGITG---QSGLPGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVGAPGLPGEKGDHGFPG------SSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQIGPIGEKGSRG---DPGTPGVPGKDGQAGQPG------QPGPKGDPGISGTPGAPG---------LPGPKGSVGGMGLPGT---PGEKGV---PGIPGPQGSPGLPGDKGAKGEKGQAGPP 1055

The following BLAST results are available for this feature:

BLAST of TCONS_00006264-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00006264-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CO4A1	3.768e-35	42.82	Collagen alpha-1(IV) chain OS=Homo sapiens GN=COL4...	[more]

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TCONS_00006264-protein (polypeptide) - C. hemisphaerica