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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00006172-protein ID=TCONS_00006172-protein|Name=TCONS_00006172-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2116bp
QESQSLYLHKVSNISTGALCNDGSPAVYYLHNNMNSSKWMIYLEGGGGCN
SESDCRDRFRKTPYFMSSKSYPKEIRTKTIMSDEEFGDYNKVILVYCSSD
LWLGNDLIPTMNLATKNKTDTTEKATFVFRGAVIFSTILMELLSKGLANA
TDVILIGQSAGGIGAINHLDFISSVLPKDTCKLTLVLDSAWFIDFENYFR
NQFGEGFGKTTGIVERPSCRDISWGFPCCFSIFCMMSNSYLPPDIPIFLM
QSKYDIYVLFQRLLQQNSHLDNVLQSNDILLKVHSYGGRMQQSLDIVDSR
PNLNYISTSCFQHGYLVSSTLWDTVYKREIELNFPSVRFKHVMNDSYWSE
IKIGNQSVKNIFMSWFRKDRNRNGTLSSFADQSSIKINDKCSHAQCNPTC
PQLIHYDTYNARWSFWKKVILIAFVLFITIGCLVTKCLWIIQHRNLKQTQ
ALYLNANYEGSDLYGKVMCLPTCPPHSAIGISCSELDYDISNFQNYETGT
LLRKRKSVAAVDTTKMRVRKRSSYAMNKKIIKGVTAYFNPGQLVAIMGPS
GSGKTTLLDVITARKHLEEAESNIFINGLPADETREWFIKNSGYVLQLAT
PYHEELTVRQNLTYSAMMRLPMKMKMQDKMWRVEQVLGQCGLYDVADVVV
GDNSFTGGGLSGGQKRRLCIALQLLDLPSVIFLDEPTSGLDSASSLELLE
TLHSLTLSGRLVVVTIHQPRIEIFHMFDAILLLCEGQVAYFGSPIIAPTM
IAEALKDSGQTFDASNPADSIMDVLTNPEAQKSILDYYLQSGEIQAINRA
IARARRHPQKTLSMKFQKQTSSIQNRLLALDGRTSASQTLSQSFYFPLIY
LLYGLALGTCYWKTHKGVLLMSCYMVFSCASQLFLASVIHGHLHKAFALF
ELEKADGIGHSTELILHVFIRTFSKSSIPLIMSCAIIYLCSIQDYVLWKF
CLTTLIHLQLNQAWIAIIVFTACCTPRYSTLVSPLLSAVAGFAGGFLVPE
PQMPWIYYWLFYINPTHWAYSGMMKVLITDVTFQCKWDSPLECQTTTGIV
VLSEFGFSERNPYVSMFILLVMLITFLLASVVVLEIKYSKRKWDKRKKNY
WQAITQSIRSCYNSLFENYYRKKREAEEEERKRLFKLVEHQYQYKGEHYA
QTPQEGVNEKDGRRPKRPTYEPLKDHSQGDGEWVDRKRLNTVNSNDFNDE
TYDETENSSNDEDIDPTLELRQPRPKLSFQQNSFTSVLTKLQSGLTSKTN
SFDNNNESPSMNGDTVPFRSSAKKKRQWRKAFAQRRKTFTGFIEEGVEEE
SKPYSRWRPKSMLLPDRHHDININNKLHRTKSNMTEHSKLSRTNTISSSR
TTVIERRKSEEQGDPPTASLSIIRRRPQPPDIVIDIERATIPEEAQVLES
QLTPQQTPKVSLNSNNQSRPTSRPSSYVSMVKSNNHHKRKKKKDPKAKDT
WSKYLDVHPKRHEVYCALNSIKKRLRGSGRGVRGALKKSESVHLQRKASI
LILDEKKDSMRTQLYGLQRTYTDDSDYSPTTMKRLLLLKSREKFIRKTEQ
NNAHIDEQPLAPLEETQVVPRSPKRRFTGDRALLERLSALSSQRNSARSS
VGTTLSSKRSSKSNSAYNVLDSPVTEMIPVNNQTSAEIYNVLRKLHDSID
ELETDDLDPNRTKSELDSKPEKQHRLSDPLLPEERDIIESLLSKYSMLEG
KSPVLEEPLKEKEEKIMFSSKVKIRGTSPYHSRAGSVIKRNLSKSTESSD
SSLPKEEGRRPSLRRPSLLESITMTEQSNSGTPTHEKGPVLSLIKDHIDT
AKNTTTDSNQSTPKFTPRGTPRARKISTVKEFTMKFEAQNQQHRRLEEPK
FTIVPEQKCYQVSSESDSSSDSSSSSEYEDTIVKTNEGFIIPDEAIEKLP
INKAAKAQRLREEQEEIERQFKKENFLKDLPVRHRGIRMPTGSAGKVNLL
KSKFEGKSLANAMTITEKRNASLRNTSHHTRHQQASRLLATNTNNESSNG
PTSSKQPRTFFKKRRQVSRSTESDSDGTVELNPMKSRGNFDSSFDTNSCS
SERDFVQAYHEKKSYFIPQTIPRDDFSDSEHSDCLSDSGKSFHSDRKRKN
VPMFRFDKHEDLERWV Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016887 | ATPase activity |
| GO:0005524 | ATP binding |
| GO:0016787 | hydrolase activity |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0016887 |
ATPase activity |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0016787 |
hydrolase activity |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 1903..1927 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 510..834
e-value: 7.6E-46
score: 156.4 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1727..1788 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1653..1681 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1248..1272 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1148..1217 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1860..1879 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1589..1615 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1969..2039 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1399..1450 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1333..1376 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1801..1824 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 2071..2096 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1551..1577 |
| IPR003593 | AAA+ ATPase domain | SMART | SM00382 | AAA_5 | coord: 540..737
e-value: 1.6E-9
score: 47.6 |
| IPR013525 | ABC-2 type transporter | PFAM | PF01061 | ABC2_membrane | coord: 849..1027
e-value: 5.7E-8
score: 32.3 |
| IPR003439 | ABC transporter-like | PFAM | PF00005 | ABC_tran | coord: 532..688
e-value: 3.1E-24
score: 85.9 |
| IPR003439 | ABC transporter-like | PROSITE | PS50893 | ABC_TRANSPORTER_2 | coord: 516..760
score: 18.287 |
| IPR004963 | Pectinacetylesterase/NOTUM | PFAM | PF03283 | PAE | coord: 8..328
e-value: 1.0E-46
score: 159.6 |
| IPR017871 | ABC transporter, conserved site | PROSITE | PS00211 | ABC_TRANSPORTER_1 | coord: 660..674 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 527..744 |
Blast
BLAST of TCONS_00006172-protein vs. Swiss-Prot (Human)
Match: ABCG2 (ATP-binding cassette sub-family G member 2 OS=Homo sapiens GN=ABCG2 PE=1 SV=3) HSP 1 Score: 160.614 bits (405), Expect = 2.588e-40 Identity = 100/268 (37.31%), Postives = 155/268 (57.84%), Query Frame = 0
Query: 517 RVRKRSSYA-----MNKKIIKGVTAYFNPGQLVAIMGPSGSGKTTLLDVITARKHLEEAESNIFINGLPADETREWFIKNSGYVLQLATPYHEELTVRQNLTYSAMMRLPMKMKMQDKMWRVEQVLGQCGLYDVADVVVGDNSFTGGGLSGGQKRRLCIALQLLDLPSVIFLDEPTSGLDSASSLELLETLHSLTLSGRLVVVTIHQPRIEIFHMFDAILLLCEGQVAYFGSPIIAPTMIAEAL---KDSGQTFDA-SNPADSIMDVL 775
RV+ +S + + K+I+ + PG L AI+GP+G GK++LLDV+ ARK ++ ING P F NSGYV+Q LTVR+NL +SA +RL M +K R+ +V+ + GL VAD VG G +SGG+++R I ++L+ PS++FLDEPT+GLDS+++ +L L ++ GR ++ +IHQPR IF +FD++ LL G++ + G EAL + +G +A +NPAD +D++
Sbjct: 45 RVKLKSGFLPCRKPVEKEILSNINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPSGLSGDVLINGAPRPAN---FKCNSGYVVQ-DDVVMGTLTVRENLQFSAALRLATTMTNHEKNERINRVIQELGLDKVADSKVGTQFIRG--VSGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPA-------QEALGYFESAGYHCEAYNNPADFFLDII 298
The following BLAST results are available for this feature:
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