TCONS_00005298-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005298-protein
Unique NameTCONS_00005298-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length241

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005298-protein ID=TCONS_00005298-protein|Name=TCONS_00005298-protein|organism=Clytia hemisphaerica|type=polypeptide|length=241bp
KIFLFVLFMMSILLDSIYPAYNKTNLLNKNYIFIHKMSSRKKVLLKVIIL
GDSGVGKTSLMNQYVTKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDT
AGQERFQSLGVAFYRGADCCVLVFDVTAPNSFKTLDSWRDEFLIQASPRD
PENFPFVVLGNKVDLENRAVSAKRAQQWCHSKNEIPYFETSAKEGINVEH
AFQAIARKALAQETEVELYNEFPDQIKLTNESKPRSSDCAC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003020XLOC_003020Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005298TCONS_00005298Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 86..108
score: 48.88
coord: 187..209
score: 43.66
coord: 68..84
score: 35.89
coord: 152..165
score: 45.85
coord: 45..66
score: 44.62
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 47..212
e-value: 4.4E-13
score: 47.5
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 45..212
e-value: 2.3E-95
score: 332.8
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 42..212
e-value: 2.6E-30
score: 116.7
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 50..241
e-value: 1.9E-16
score: 70.6
NoneNo IPR availableGENE3D3.40.50.300coord: 109..210
e-value: 2.2E-33
score: 113.8
NoneNo IPR availableGENE3D3.30.70.1390coord: 44..108
e-value: 2.1E-28
score: 97.6
NoneNo IPR availablePROSITEPS51419RABcoord: 40..241
score: 32.996
NoneNo IPR availableCDDcd01862Rab7coord: 45..215
e-value: 5.02163E-134
score: 376.62
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 46..205
e-value: 1.2E-27
score: 94.6
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 46..210
e-value: 3.7E-58
score: 195.6
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 41..219

Blast
[Close]
BLAST of TCONS_00005298-protein vs. Swiss-Prot (Human)
Match: RAB7A (Ras-related protein Rab-7a OS=Homo sapiens GN=RAB7A PE=1 SV=1)

HSP 1 Score: 374.785 bits (961), Expect = 9.303e-134
Identity = 178/207 (85.99%), Postives = 188/207 (90.82%), Query Frame = 0 
Query:   37 MSSRKKVLLKVIILGDSGVGKTSLMNQYVTKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNSFKTLDSWRDEFLIQASPRDPENFPFVVLGNKVDLENRAVSAKRAQQWCHSKNEIPYFETSAKEGINVEHAFQAIARKALAQETEVELYNEFPDQIKLTNESKPRSS--DCAC 241
            M+SRKKVLLKVIILGDSGVGKTSLMNQYV KKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPN+FKTLDSWRDEFLIQASPRDPENFPFVVLGNK+DLENR V+ KRAQ WC+SKN IPYFETSAKE INVE AFQ IAR AL QETEVELYNEFP+ IKL    + ++S   C+C
Sbjct:    1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNDRAKASAESCSC 207
The following BLAST results are available for this feature:
BLAST of TCONS_00005298-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB7A9.303e-13485.99Ras-related protein Rab-7a OS=Homo sapiens GN=RAB7... [more]
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