TCONS_00005298 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005298
Unique NameTCONS_00005298
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1860

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005298 ID=TCONS_00005298|Name=TCONS_00005298|organism=Clytia hemisphaerica|type=transcript|length=1860bp
caaaaatctttttattcgTATTATTCATGATGTCTATTCTCTTGGATTCC
ATCTATCCTGCTTataacaaaacaaatttactaaataaaaattatatatt
tataCATAAAATGTCGTCAAGGAAGAAAGTATTATTAAAAGTTATTATAC
TCGGTGACAGTGGaGTTGGCAAAACTTCTTTAATGAACCAATatgtcaca
aaaaaattcagcaACCAATATAAAGCTACGATAGGAGCAGATTTTTTAAC
GAAAGAAGTTATGGTTGACGACAGGCTAGTCACAATGCAGATTTGGGATA
CAGCTGGACAAGAACGCTTCCAATCTCTTGGTGTTGCATTTTACAGAGGT
GCTGATTGTTGTGTACTGGTATTCGATGTCACTGCACCAAATTCATTCAA
AACGTTAGATTCCTGGAGGGACGAATTTCTCATCCAAGCCAGTCCAAGAG
ACCCAGAAAATTTCCCTTTCGTCGTTCTTGGTAACAAAGTGGATCTTGAA
AACAGAGCGGTATCAGCAAAACGAGCCCAACAATGGTGTCATAGTAAAAA
CGAAATTCCATACTTTGAGACGTCGGCTAAAGAAGGAATAAACGTCGAAC
ACGCTTTCCAAGCTATCGCACGAAAAGCACTTGCACAAGAAACCGAAGTC
GAACTTTACAATGAATTTCCAGACCAAATTAAATTGACGAATGAGTCCAA
ACCAAGATCTAGTGATTGTGCATGTTAATATGTTCACCAATCtcgctgaa
aatatttttcttcggTCAAAATTAATtatattcttgttttaaaaatcata
CACCACCACGACTATCGTCACAGTCAAGTCAGATGCAGTTGGATGTAATA
TTCGAAGCTTTAGGAATCTTTATGAATTAATTTGGATTCTTCCAATGCAA
TGCTCTTGTCTGTTAGTAGAATCGACGATGAAAAATTGCAATATGGCTGT
ATTATGCTGGAGTAAAATGAATATATTTATTCATACCATTGGAATTTTCG
TTTGCCTTAAATCTATCCTTAAAATTGATCATCTTTTTGGTTGCTTTTGT
TTGACATGGACATTTTCAACGATTTCAAATATTCTGTCTTATTGATAgag
aatattttattttaaaaccgTAAAAGTCTCCTTGGAATTATTCAGAATTT
TCGGTTTCGATGTGTGAAATTCCTCCATAATCAGCNGAATTATtcagaat
tttcggttttgatGTGTGAAATTCCTCCATAATCAGCACTCAAATATAGT
GATGGATGCTTGTTAGTCTACTCTTAAAATAGATATTTCTGGAAATGACC
CTTCTCATCTTAGGATTTTTTgctattgtttaatttatttaatttgtctg
aatgaataaataaaatactttaCTTTTGTATGAAAAACACTGTGATGTGA
TGGATTTGTTCTCCCTAAACTTGGTTGAGGGTTTAGGAACCTTCACTACA
TAGACATGTTTTACCATGCATCATTTGATACTTTCCCTCTCTAAATGAGT
ACATCTCTTTTGCAAATTTGATAACACCAAGATTTGCACTACTTGTATTC
AAACTTACTGGCTTACACCATACAGCCTTACTCCTGTAAAGATTTTTTAG
TAttgttttttgttctttttatgttaatttttcagggttatttttccaaa
tattttttgactatATGCAATTATTATAAACAAatccttgaatttttttt
ttttttgtgatttataaataattaaaaatggaATAAGAAGCGTTGTCGTA
AATTATTTCACTTTGAGCGATATTCTCGTCAACTTAGAAAGGAGATAATA
ATCAGGGAAATGAAGAAATATCGCTTTTAATCTGAGATTTAACTCAAAAT
TATACGAGCA
Run BLAST on NCBI

protein sequence of TCONS_00005298-protein

>TCONS_00005298-protein ID=TCONS_00005298-protein|Name=TCONS_00005298-protein|organism=Clytia hemisphaerica|type=polypeptide|length=241bp
KIFLFVLFMMSILLDSIYPAYNKTNLLNKNYIFIHKMSSRKKVLLKVIIL
GDSGVGKTSLMNQYVTKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDT
AGQERFQSLGVAFYRGADCCVLVFDVTAPNSFKTLDSWRDEFLIQASPRD
PENFPFVVLGNKVDLENRAVSAKRAQQWCHSKNEIPYFETSAKEGINVEH
AFQAIARKALAQETEVELYNEFPDQIKLTNESKPRSSDCAC
Run BLAST on NCBI

transcript from alignment at sc0000052:608242..618254+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005298 ID=TCONS_00005298|Name=TCONS_00005298|organism=Clytia hemisphaerica|type=transcript|length=10013bp|location=Sequence derived from alignment at sc0000052:608242..618254+ (Clytia hemisphaerica)
caaaaatctttttattcgTATTATTCATGATGTCTATTCTCTTGGATTCC
ATCTATCCTGCTTGTAAGTTGAGGGTATATTTTTTCATCCATTCATCCTT
TCTTGAAATACAGAACCAAAAGAATGTTGTACTTTTTACACtagattttt
tgttcatttttgtaCTGTTTTCAAAAGTGAGGTTTCAATATATTTGTATG
ATGGGCAAATAATCCCTAATCTTATTTCCTAAATGCCTTTGAATATACAT
GTTCCAGGCTCACAAAGATCGTAAACCATCTGACTGGTTGATGTGTGGCA
CAAGGTTTTTAAGGATCTTCTAAGTGTAGATAACCATGTATTTTTCTTGT
CTTTGTTCCAGCAAACAGAGTTTGAATGCCTTCAATCTTGACCAATATGT
CTTTTCAGGGTGGTggatttttcaaataaagctcCTGGAAGGCCAGTGCA
CTGTGCGATTTTGAGCTCAATTGTCACCCACGTGGAAATGAGAATCTTAT
ATACAAAACCACGGTAGAGAGTGCCTGCTGCAAAACAACCCATGGCCCCA
ATAGAccctttttcaaagaggacgtcctgttaaataattatgtagtccag
ccatgaaagcaatgatagagccatgcataattactgtatcatgcatattg
taataattatgcatggttttatcattgtttttctgctggactacataatt
attcaacagggtggcctctttgaaaaaaggtctatataacAAGCAAATTA
CATGCTTGCAATTTGCTTGTTATATTGGGGTGATGAGCGGTTTGTGCAGC
AGGCACTCTTAATTGTTTCTGCATAGCGTCAACCCCCCTGACTTTTTTTG
GTAGGGCAGCAACAAATTCGCAATTTTAGTAAAATAAAGTTTGGGGTGTT
TGTCTTACCGGATAGaaagtaccgtcaactgctccaacttgggacgagtg
tacgcaacatgggacttattgatatctggtctgtattttcacttactgta
aaatcaaaagagaaatcgtgtattttttaatacgcggttcattaaactca
aatcaaatgactttgtaGGTtgggtgaaatggtggtggacgtctacgtcc
catgttgcgtaggatggtcccaagttggagcagttgacgggaGCTAAAGa
tcatcaaatctttttttaaactaaaGAGAATTTACCCAGCTTTCAGTTAG
GGaagccatccaggatcctgccattctaatCAGCcaacaaaaactaaatg
acattgtaaacttaagtttcttactatttttcatcgaaaacaatcaaaaa
cattaccccaaagccggagaccaaagcaaatgatcttccttgatgagggc
gcccttttgaagtattgttaactcatttaaaatggtggacagagttgcgg
AATAATAAAGGCGCCCGCTGctttgagggtggtaacgccaaaacaccCAA
TATAATCAGCCAACAAAAGGGGAGTTTTTTGTCGCGTGAGTCACGCACTC
CACCGTAGCGAAGGCGCGAGCAGCATTAtacaattataagaatatcttaa
atgtgcttaattctatttgactttgagagTTTCATTGAAGCTGATTGAAG
ATGATGAagtagaaagataaaaaatgcgctggttaattttgtttaaatag
gtGCGTTCTATCACCACTGTTGAAAGTTGGAGAAATTTCTACTGACGCAA
AACgtttttacagccaattaaaaggcacagtctgcttatacttactgTGT
TTGCTATATtgtttaggcaaaaaacggtaaaaaaagacgcaaacataatt
tttttatgagtggggttatgatttttttgatagcgaccgcgtacaggaac
tcgccaaatgttcctaaccgGCTTTCTTCTAAAATAATCCGCATTCTTAT
ATCTTTCTTCGTTTCTAAAATATTTAGGAAAACCCACTTTGCAGTCTACA
ATATTCCCTCTCCGCAAAAACGACACCAAAAAGTTTCTAGGTACCCTTAC
TTTAATAACACTTACGAGTGATGTCTTTCGTCTACCGGCATAAtagaaaa
taggcctcaaagcatcctgcaactcaaccaaatagaaataaaaatgcCCC
CGAGCGTAGGTTTTTCAAAGGGGTGCCGAAAAAACAAAGAGTGCAAAAAG
ATGGctctgattactaattttgGTGCCCCTTTACTCTTTTACATCTTAGA
TATGGcagtttttggccaaaaaagagTGAAAACACCCCAAAATTCTCGTG
ATTACTTCGCTCGCGttactttttaaacagatatTTACTTTATCATAGCg
ggcgccaaaatcaaaatcttctaaaattgcATCCCCAATTTGCCCAAATT
CTAGTTGACCCACCACTCTACTGTGCATTATAGTCATTTTCACCCATGAA
AATAAAGGCCTCTCTACATCATCTTAAAAACGTTAACATTTCTAGAATGG
CAAAAAAATAGATGTGATTTTCCTGAAAACAATATTAAATCAACAAATAT
AGCACTAGGTATATATAGGTCTGGGGGCTGCGTACAGAACTTTTAATATT
TGGGGGGGGCCtatttttttgcctgggacctagacCTGGGCTGACCCTAT
GTTGTTTTATATAAAATTCCCATTTTCACAGATTTTTCTCACTTCTTCAC
TAAAAAACCTTTTACAATGATAACCAGCATAAGATTGAAAAGGGTTTGTT
TTTAAAGGTACAGAAAATCTGGTGTTTACTCATGAAACTGCTTTTAACTC
TCCAAACTTATTTTTTAACTACTTGAAGTCCTGGTTGTTTTCCTCTAGAA
AAGTAGGATTCTTGGTACGGAAAGGAAAATCTTATACAAAGCCACAGTAA
GGCCTCAATCAATCGGCGTCAGCCATTTTGAAGGAAAACTACAAAATTAA
AAAGGTGCGCTAGCGGTGAACATGCATTTGTCATGGTCTCTGTTGCAGAA
ATATTTGCTAAAACAGTGAAATCTAGAACTGGTTTGGCTTAATACTGGGA
AACCTTTATCATTTTGATGATAGACCTGGATTCAAAATGGTACCCAAAGT
GCCAGTAGAACTGAAATGAAAATGGCGATGGGCGGCTGTCCAGAATAAAA
GTGTGATGATTGACAGTCGGCCTTTGATGCGCTGCATCCTCAGCCGGTTT
CAACTACCCTTGTGCGTAAACCCTTATACAAATACAGCTAGTATATGTCT
CTGTCGATATCTCTAATTTGTACATAGCTAGGCTACAATCTTATTTGcat
ttactttcactttcactccAAACAGTGAGCATAGGtgttgtaaaaaataa
atacataCATGAATCAATAGACCttcagggctgcaaataaatatttttag
tcaatcggacatcatgtccgacagaaatgaaatcctgtcggtcaaactca
aaaacCTGTCGGTCATtaagtgtatattttttttaaagttacggagaaag
cgagtaggaaaaatgaaagttacctttgaacagtttgttactgtatataa
cagagaaattgatttgataaaagtgatcttagatcTTAGACCcttggaag
ttacgaagaaagcaagttgataaaagtgatcttagaaacactcttgaaag
ttacgaagaaagcgagttgataaaagtttaactttgaaacacccttgaaa
gttacaaagaaagcgaattgataaaagtgatcttagaaacactcttgaaa
gttacgaagaaagcgaattgataaaagtttaactttgaaacacccttgaa
agttacaaagaaagtgaattgataaaagtgatcttagaaacactcttgaa
agttatgaagaaagcgagtcgataaaagttaactttgaaacacccttgaa
agttacaaagaaaaagcaaatcgataaaagtgatcttagaaacaaggaag
gttacgaagaaagcaagttgacaaaagtaatttagaaacacccttaaagg
agttacaaagaaagagggttgataaaagtggtcttagaaacaaagaaagt
aatgaagaaagcaagtcgataaaagttaacttagaaacaccctgaaagct
acaaaggaagcaagtattaaaagaataggctaagtaagagacaggggtgt
aagagatttattttcaactctcaagttaatggtttatttcttttttcatt
cggacatcatgaccgacacaaaagattttcagtcggtcaaatagcttttt
cagtcggacattgaccgatgaccgacgcttatttgcagccctggaCCTTA
TGCTTATCAGGGTGTCATATTAAATACTGATTATCGCTCCAATAAAGTTG
CAGCAAAAGTATTTGAATGATAGAAGTAGTGAAATTATTCTTTTAATACA
ATAGGCCAGCGGAttgctaaagtttcaaaaataaagaaaaaattcaaaat
ttctgtGATAAaccttttgatttgtttgtttGAGGGCGCTGATTCCAAAT
TTGAATGTAACCAAGCttaaaaacccgcagtttttgtgtaatttgttatt
ttttttctgtttttaggcaaaattgtatAATATTtttgggggtcttcaaa
atcataAAAGACTTATActacatgatagagctcttcaaactgagcaaaat
aatgtattatatcaaagtctaaacttttcttgaaaaaagtctttactttt
tttgaaaatagggaatttccccataatctgcataatttatgcaaaattat
agcactttttttgccacaaaaatgaCCATAACAATTGATCTataaaagtt
gagactttgatatatacaatacatttttttgctcagtttgaagagcaaCG
TACACGTGGTGcaagtcttttttgattttgaagacatagtgggcaacacc
cctccaacccccacctaaaaaaagtcacccccacctgcatagggttaccc
ccacctgaaaattgaAGACTACTCAACCCCCACCTTCTTGGGCAACCCCC
ACctgattttaaaaaatcttccaacccccacctgaaaaatccAATTTCAT
CTGTTTCATTAATAGATTTGCCTTCCAATTTGGAGATTTTGTTCCTTTTA
GGAACGCTCAAAATTCCAGTCAAGTCCCCTGATGACTATGAACTGGAAAG
GAGGAGATTGGAGGATAAGAaatgaacttttttttcttgcaagcctgtat
atatagttttttcaaagtttttctctttttttgttcAACTGAAAGATACA
CTCAAAACTAcacaacccccacctgaaaatttcCACCTCACCTGAAAATG
TCCACCCCCACCTGtatagggttacccccacctgaattttttcatcaact
caacccccacctgattcaaaaaatttgaaaatcgtcAAACCCCCTCCCCC
CCAGAATCCTGGGGGGGGtgccaaaaatcaattttgcctaaaaacgcaaG
AAATTTCCATCGGACATGATGTCTGCAGATtgactaaaatatttatttac
agCCCTGTGATAGTCCAAAATCTTAAAGTAAAATGAACTAGATGTATTGC
AATGAGTCTGACAAGTAGTTTTCGAAGGtaaaaattgagttttaaaTAGG
TTGATTTAACTTTGAAGCTATGATGCAGCGATTAGTTTAGTTTATTTAGt
tcaaaataaagatatttatcACCACTGACATTATTTGAACTccttcaaaa
cattcgaaataaATGCTGTTCATAATCAAGTTGGACATTGTAGGCCATTA
AAATTGTGAAAACACCCATTTAGAATGTCTAGAGGGCAAAAGTTCTTCGT
CCATGGTTTTGGAAAATTAATCACtgcattaaaaaaattcactttttcag
AACTAGTAGGCCTGATTTGTAACAAATTCCATAAAAATTgtgcaaatttg
gaacaaagcacCAAATTTGGACCAGACATGCCTAATACCCTATGGATTGA
TATTAGAAGGGCTTCCCAGAATGATTTTAAGGGTAGCCCCTATTTTTGGA
CCCATTTATTGAAAAAGTAGGCTAAAGCCCAAGGGCccaatttttatgga
aatttcaaactcattttaagCCTAAACTAATTAAAGAATCTGAAAGCTct
tgaaaaactatatagaagactttgtAGCGAGTATGGCCGATTTCTGTACT
GAATGGGTGTTATTTGATGTCATTTTATAAGTGATTTatgaccaaaatga
gggggaaaCCATCACTTCTTCACTAAATTTTCATTTAGCTGTTGATTGTC
GTCCATCcggcatgaaacttaaagttctaagtaataaatcaaagtctctt
tcttttaatttgaacaaGCTCTGATATCATCGAGCACTCTCGGCAGATAG
AAGATAACAGACTTGTATTGCCTCCCTTCATATAATACATctcaataatt
tttaaaacatcgcACTATTTGCAgtacaaaaaaacttgaattattgaaaa
atttggtATTATTGAAGGCACTGAAAAGGGGTTGTGGTACCTTAGACAAA
TTTTCCTGGAAACTAGGGGTACATTTTGTTACAAAAGTATGTTGACACAT
TACCTCTTTAGCAAATTTTCTACACATTTATGCTATCTTAAAAAGCTATG
CACTGTTGGAAAGATAGTTCCAACCAGAATAATCCAGTTTTTGTAAACta
gaaaaatggagaaaaaaaagataaaaaaaatatttttttctattggCTCA
AAAATTCTGACGTTTTAGTATATTTGAACTTTGCTGATTCTGTGttcaga
ttttttgtatttataataaaaaatgagagcACTGTAATGAAGatcatttt
tgctgtttttttctgAGGCTTGAAATGTTGGTTTTTCTCACCTGACCAAG
CCTGGCCTTAGATTTTGGAGTTAGGTTGGGTGGTTGGAAAatccttttat
ttttataatttatgaTAGTTCAGTTTACATTTGggtcattttgaaataaa
aatggaaGAGCTAGAAGGGAATTCGCAATTCTTGATCTTAAGATAGAATG
AGAGGGACGCAATAGAGGTTCTGATTTTGAGAAACAATTCTTTTAAATGG
CAATATAATTTTTAGGTTTGGCAGGTTTCCAGGTACCGACATTTTTTCTG
TCCAGCCTAATTCTCCTATATTAATATATATAATTTAAAGGGTATATTAT
TTAATGTAAGGGTGATTTGGCACACAGAAAAtgataaatatgattatttt
ctatattttagataacaaaacaaatttactaaataaaaattatatattta
taCATAAAATGTCGTCAAGGAAGAAAGTATTATTAAAAGTTATTATACTC
GGTGACAGTGGGTAAGTTTACATTCAATTTAGATTCTCTTTTTGGCACTA
ATAAAATTTTTTCTATATAATTATCTTCTTTGAGGGATCAACTGAcagtt
tatttcattttttaacaaGCTCCATTCTGTTCTTAGTTTGTTAAAAGTCT
TTACtcttatttttccttttcagaGTTGGCAAAACTTCTTTAATGAACCA
ATatgtcacaaaaaaattcagcaACCAATATAAAGCTACGATAGGAGCAG
ATTTTTTAACGAAAGAAGTTATGGTTGACGACAGGCTAGTCACAATGCAG
GTAAAAAACCTTCAAGTGATTGTAAAATGTTACAGACAGGGTCAAATTGG
TGCTTTGAGTTATcaattatttaatatttttgacTATTGATTGTCTGAAT
ATTTTGTTTAAGCTAAAGTtacattttcttcaaattatgtGCTGGTAATA
TCTACTTTCATAGTTTTCATGTCACTGATTTTTAGATTTGGGATACAGCT
GGACAAGAACGCTTCCAATCTCTTGGTGTTGCATTTTACAGAGGTAATTT
CCTTAGAGAAAAAGCAACTAGATATCCATGCGAAAAATATTCTTTAGAAT
TTTTAcaagccattttttcaaaaaagaaactttttctgttttcatcataa
atatGAAATTGTATTCATTTGACTTGTGCACAACATAGCCACTCCCATTT
TTAGAATGAAGGGTTTTAACTTATTCTCACAATAAAAATGATACTATTGT
AAGTAACCTGTATTTATCTTATCAGGTGCTGATTGTTGTGTACTGGTATT
CGATGTCACTGCACCAAATTCATTCAAAACGTTAGATTCCTGGAGGGACG
AATTTCTCATCCAAGCCAGTCCAAGAGACCCAGAAAATTTCCCTTTCGTC
GTTCTTGGTAACAAAGTGGATCTTGAAAACAGAGCGGTAAGTGAAAGAAA
TTACCTCTGAAAggaaataattaaaattttctatGGTCACCAAAAATCTT
AAAGAAGCACTTCTGAAATTAGTTCTTGAAAAATTAGTTTGGCTCCTTTA
AATAGGTAGCGCTTATTGGGATCAGTTCTATGTTTTCCAGGTTCGTTGAG
TTGTGCCAGACAGTTCAGTTGGGTTCAGTTGGGCCAAACAATGATCAGGA
CTTTATTTTGACATGACATAGGATTAAGTTTGCTTTTTCAGTCTGTTGAT
TTCGATGAATTATCACTGTCCTTGTTATGATATTAATGTTACAGtaggat
tttaggggaatttttcctgaggcataaacatcctatagagaaggtctgga
gaaagtttcagctagatcttattgttttcccgtaaattatgctaaacgac
cccactaatATTAATGTTACAGTAAACAGATATTTCTTCATCGCCTTGTT
CTTACATTACAGGTATCAGCAAAACGAGCCCAACAATGGTGTCATAGTAA
AAACGAAATTCCATACTTTGAGACGTCGGCTAAAGAAGGAATAAACGTCG
AACACGCTTTCCAAGCTATCGCACGAAAAGCACTTGCACAAGAAACCGAA
GTCGAACTTTACAATGAATTTCCAGACCAAATTAAATTGACGAATGAGTC
CAAACCAAGATCTAGTGATTGTGCATGTTAATATGTTCACCAATCtcgct
gaaaatatttttcttcggTCAAAATTAATtatattcttgttttaaaaatc
ataCACCACCACGACTATCGTCACAGTCAAGTCAGATGCAGTTGGATGTA
ATATTCGAAGCTTTAGGAATCTTTATGAATTAATTTGGATTCTTCCAATG
CAATGCTCTTGTCTGTTAGTAGAATCGACGATGAAAAATTGCAATATGGC
TGTATTATGCTGGAGTAAAATGAATATATTTATTCATACCATTGGAATTT
TCGTTTGCCTTAAATCTATCCTTAAAATTGATCATCTTTTTGGTTGCTTT
TGTTTGACATGGACATTTTCAACGATTTCAAATATTCTGTCTTATTGATA
gagaatattttattttaaaaccgTAAAAGTCTCCTTGGAATTATTCAGAA
TTTTCGGTTTCGATGTGTGAAATTCCTCCATAATCAGCNGAATTATtcag
aattttcggttttgatGTGTGAAATTCCTCCATAATCAGCACTCAAATAT
AGTGATGGATGCTTGTTAGTCTACTCTTAAAATAGATATTTCTGGAAATG
ACCCTTCTCATCTTAGGATTTTTTgctattgtttaatttatttaatttgt
ctgaatgaataaataaaatactttaCTTTTGTATGAAAAACACTGTGATG
TGATGGATTTGTTCTCCCTAAACTTGGTTGAGGGTTTAGGAACCTTCACT
ACATAGACATGTTTTACCATGCATCATTTGATACTTTCCCTCTCTAAATG
AGTACATCTCTTTTGCAAATTTGATAACACCAAGATTTGCACTACTTGTA
TTCAAACTTACTGGCTTACACCATACAGCCTTACTCCTGTAAAGATTTTT
TAGTAttgttttttgttctttttatgttaatttttcagggttatttttcc
aaatattttttgactatATGCAATTATTATAAACAAatccttgaattttt
tttttttttgtgatttataaataattaaaaatggaATAAGAAGCGTTGTC
GTAAATTATTTCACTTTGAGCGATATTCTCGTCAACTTAGAAAGGAGATA
ATAATCAGGGAAATGAAGAAATATCGCTTTTAATCTGAGATTTAACTCAA
AATTATACGAGCA

Coding sequence (CDS) from alignment at sc0000052:608242..618254+

>TCONS_00005298 ID=TCONS_00005298|Name=TCONS_00005298|organism=Clytia hemisphaerica|type=CDS|length=4356bp|location=Sequence derived from alignment at sc0000052:608242..618254+ (Clytia hemisphaerica)
aaaatctttttattcgTATTATTCATGATGTCTATTCTCTTGGATTCCAT
CTATCCTGCTTataacaaaacaaatttactaaataaaaattatatattta
taCATAAAATGTCGTCAAGGAAGAAAGTATTATTAAAAGTTATTATACTC
GGTGACAGTGGaGTTGGCAAAACTTCTTTAATGAACCAATatgtcacaaa
aaaattcagcaACCAATATAAAGCTACGATAGGAGCAGATTTTTTAACGA
AAGAAGTTATGGTTGACGACAGGCTAGTCACAATGCAGATTTGGGATACA
GCTGGACAAGAACGCTTCCAATCTCTTGGTGTTGCATTTTACAGAGGTGC
TGATTGTTGTGTACTGGTATTCGATGTCACTGCACCAAATTCATTCAAAA
CGTTAGATTCCTGGAGGGACGAATTTCTCATCCAAGCCAGTCCAAGAGAC
CCAGAAAATTTCCCTTTCGTCGTTCTTGGTAACAAAGTGGATCTTGAAAA
CAGAGCGGTATCAGCAAAACGAGCCCAACAATGGTGTCATAGTAAAAACG
AAATTCCATACTTTGAGACGTCGGCTAAAGAAGGAATAAACGTCGAACAC
GCTTTCCAAGCTATCGCACGAAAAGCACTTGCACAAGAAACCGAAGTCGA
ACTTTACAATGAATTTCCAGACCAAATTAAATTGACGAATGAGTCCAAAC
CAAGATCTAGTGATTGTGCATGTTAAaaaatctttttattcgTATTATTC
ATGATGTCTATTCTCTTGGATTCCATCTATCCTGCTTataacaaaacaaa
tttactaaataaaaattatatatttataCATAAAATGTCGTCAAGGAAGA
AAGTATTATTAAAAGTTATTATACTCGGTGACAGTGGaGTTGGCAAAACT
TCTTTAATGAACCAATatgtcacaaaaaaattcagcaACCAATATAAAGC
TACGATAGGAGCAGATTTTTTAACGAAAGAAGTTATGGTTGACGACAGGC
TAGTCACAATGCAGATTTGGGATACAGCTGGACAAGAACGCTTCCAATCT
CTTGGTGTTGCATTTTACAGAGGTGCTGATTGTTGTGTACTGGTATTCGA
TGTCACTGCACCAAATTCATTCAAAACGTTAGATTCCTGGAGGGACGAAT
TTCTCATCCAAGCCAGTCCAAGAGACCCAGAAAATTTCCCTTTCGTCGTT
CTTGGTAACAAAGTGGATCTTGAAAACAGAGCGGTATCAGCAAAACGAGC
CCAACAATGGTGTCATAGTAAAAACGAAATTCCATACTTTGAGACGTCGG
CTAAAGAAGGAATAAACGTCGAACACGCTTTCCAAGCTATCGCACGAAAA
GCACTTGCACAAGAAACCGAAGTCGAACTTTACAATGAATTTCCAGACCA
AATTAAATTGACGAATGAGTCCAAACCAAGATCTAGTGATTGTGCATGTT
AAaaaatctttttattcgTATTATTCATGATGTCTATTCTCTTGGATTCC
ATCTATCCTGCTTataacaaaacaaatttactaaataaaaattatatatt
tataCATAAAATGTCGTCAAGGAAGAAAGTATTATTAAAAGTTATTATAC
TCGGTGACAGTGGaGTTGGCAAAACTTCTTTAATGAACCAATatgtcaca
aaaaaattcagcaACCAATATAAAGCTACGATAGGAGCAGATTTTTTAAC
GAAAGAAGTTATGGTTGACGACAGGCTAGTCACAATGCAGATTTGGGATA
CAGCTGGACAAGAACGCTTCCAATCTCTTGGTGTTGCATTTTACAGAGGT
GCTGATTGTTGTGTACTGGTATTCGATGTCACTGCACCAAATTCATTCAA
AACGTTAGATTCCTGGAGGGACGAATTTCTCATCCAAGCCAGTCCAAGAG
ACCCAGAAAATTTCCCTTTCGTCGTTCTTGGTAACAAAGTGGATCTTGAA
AACAGAGCGGTATCAGCAAAACGAGCCCAACAATGGTGTCATAGTAAAAA
CGAAATTCCATACTTTGAGACGTCGGCTAAAGAAGGAATAAACGTCGAAC
ACGCTTTCCAAGCTATCGCACGAAAAGCACTTGCACAAGAAACCGAAGTC
GAACTTTACAATGAATTTCCAGACCAAATTAAATTGACGAATGAGTCCAA
ACCAAGATCTAGTGATTGTGCATGTTAAaaaatctttttattcgTATTAT
TCATGATGTCTATTCTCTTGGATTCCATCTATCCTGCTTataacaaaaca
aatttactaaataaaaattatatatttataCATAAAATGTCGTCAAGGAA
GAAAGTATTATTAAAAGTTATTATACTCGGTGACAGTGGaGTTGGCAAAA
CTTCTTTAATGAACCAATatgtcacaaaaaaattcagcaACCAATATAAA
GCTACGATAGGAGCAGATTTTTTAACGAAAGAAGTTATGGTTGACGACAG
GCTAGTCACAATGCAGATTTGGGATACAGCTGGACAAGAACGCTTCCAAT
CTCTTGGTGTTGCATTTTACAGAGGTGCTGATTGTTGTGTACTGGTATTC
GATGTCACTGCACCAAATTCATTCAAAACGTTAGATTCCTGGAGGGACGA
ATTTCTCATCCAAGCCAGTCCAAGAGACCCAGAAAATTTCCCTTTCGTCG
TTCTTGGTAACAAAGTGGATCTTGAAAACAGAGCGGTATCAGCAAAACGA
GCCCAACAATGGTGTCATAGTAAAAACGAAATTCCATACTTTGAGACGTC
GGCTAAAGAAGGAATAAACGTCGAACACGCTTTCCAAGCTATCGCACGAA
AAGCACTTGCACAAGAAACCGAAGTCGAACTTTACAATGAATTTCCAGAC
CAAATTAAATTGACGAATGAGTCCAAACCAAGATCTAGTGATTGTGCATG
TTAAaaaatctttttattcgTATTATTCATGATGTCTATTCTCTTGGATT
CCATCTATCCTGCTTataacaaaacaaatttactaaataaaaattatata
tttataCATAAAATGTCGTCAAGGAAGAAAGTATTATTAAAAGTTATTAT
ACTCGGTGACAGTGGaGTTGGCAAAACTTCTTTAATGAACCAATatgtca
caaaaaaattcagcaACCAATATAAAGCTACGATAGGAGCAGATTTTTTA
ACGAAAGAAGTTATGGTTGACGACAGGCTAGTCACAATGCAGATTTGGGA
TACAGCTGGACAAGAACGCTTCCAATCTCTTGGTGTTGCATTTTACAGAG
GTGCTGATTGTTGTGTACTGGTATTCGATGTCACTGCACCAAATTCATTC
AAAACGTTAGATTCCTGGAGGGACGAATTTCTCATCCAAGCCAGTCCAAG
AGACCCAGAAAATTTCCCTTTCGTCGTTCTTGGTAACAAAGTGGATCTTG
AAAACAGAGCGGTATCAGCAAAACGAGCCCAACAATGGTGTCATAGTAAA
AACGAAATTCCATACTTTGAGACGTCGGCTAAAGAAGGAATAAACGTCGA
ACACGCTTTCCAAGCTATCGCACGAAAAGCACTTGCACAAGAAACCGAAG
TCGAACTTTACAATGAATTTCCAGACCAAATTAAATTGACGAATGAGTCC
AAACCAAGATCTAGTGATTGTGCATGTTAAaaaatctttttattcgTATT
ATTCATGATGTCTATTCTCTTGGATTCCATCTATCCTGCTTataacaaaa
caaatttactaaataaaaattatatatttataCATAAAATGTCGTCAAGG
AAGAAAGTATTATTAAAAGTTATTATACTCGGTGACAGTGGaGTTGGCAA
AACTTCTTTAATGAACCAATatgtcacaaaaaaattcagcaACCAATATA
AAGCTACGATAGGAGCAGATTTTTTAACGAAAGAAGTTATGGTTGACGAC
AGGCTAGTCACAATGCAGATTTGGGATACAGCTGGACAAGAACGCTTCCA
ATCTCTTGGTGTTGCATTTTACAGAGGTGCTGATTGTTGTGTACTGGTAT
TCGATGTCACTGCACCAAATTCATTCAAAACGTTAGATTCCTGGAGGGAC
GAATTTCTCATCCAAGCCAGTCCAAGAGACCCAGAAAATTTCCCTTTCGT
CGTTCTTGGTAACAAAGTGGATCTTGAAAACAGAGCGGTATCAGCAAAAC
GAGCCCAACAATGGTGTCATAGTAAAAACGAAATTCCATACTTTGAGACG
TCGGCTAAAGAAGGAATAAACGTCGAACACGCTTTCCAAGCTATCGCACG
AAAAGCACTTGCACAAGAAACCGAAGTCGAACTTTACAATGAATTTCCAG
ACCAAATTAAATTGACGAATGAGTCCAAACCAAGATCTAGTGATTGTGCA
TGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003020XLOC_003020Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005298-proteinTCONS_00005298-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005298-exon-sc0000052-1491911889:608242..608304TCONS_00005298-exon-sc0000052-1491911889:608242..608304Clytia hemisphaericaexon
TCONS_00005298-exon-sc0000052-1510915933:608242..608304TCONS_00005298-exon-sc0000052-1510915933:608242..608304Clytia hemisphaericaexon
TCONS_00005298-exon-sc0000052-1575043694:608242..608304TCONS_00005298-exon-sc0000052-1575043694:608242..608304Clytia hemisphaericaexon
TCONS_00005298-exon-sc0000052-1491911889:615403..615502TCONS_00005298-exon-sc0000052-1491911889:615403..615502Clytia hemisphaericaexon
TCONS_00005298-exon-sc0000052-1510915933:615403..615502TCONS_00005298-exon-sc0000052-1510915933:615403..615502Clytia hemisphaericaexon
TCONS_00005298-exon-sc0000052-1575043694:615403..615502TCONS_00005298-exon-sc0000052-1575043694:615403..615502Clytia hemisphaericaexon
TCONS_00005298-exon-sc0000052-1491911889:615665..615791TCONS_00005298-exon-sc0000052-1491911889:615665..615791Clytia hemisphaericaexon
TCONS_00005298-exon-sc0000052-1510915933:615665..615791TCONS_00005298-exon-sc0000052-1510915933:615665..615791Clytia hemisphaericaexon
TCONS_00005298-exon-sc0000052-1575043694:615665..615791TCONS_00005298-exon-sc0000052-1575043694:615665..615791Clytia hemisphaericaexon
TCONS_00005298-exon-sc0000052-1491911889:615977..616034TCONS_00005298-exon-sc0000052-1491911889:615977..616034Clytia hemisphaericaexon
TCONS_00005298-exon-sc0000052-1510915933:615977..616034TCONS_00005298-exon-sc0000052-1510915933:615977..616034Clytia hemisphaericaexon
TCONS_00005298-exon-sc0000052-1575043694:615977..616034TCONS_00005298-exon-sc0000052-1575043694:615977..616034Clytia hemisphaericaexon
TCONS_00005298-exon-sc0000052-1491911889:616267..616427TCONS_00005298-exon-sc0000052-1491911889:616267..616427Clytia hemisphaericaexon
TCONS_00005298-exon-sc0000052-1510915933:616267..616427TCONS_00005298-exon-sc0000052-1510915933:616267..616427Clytia hemisphaericaexon
TCONS_00005298-exon-sc0000052-1575043694:616267..616427TCONS_00005298-exon-sc0000052-1575043694:616267..616427Clytia hemisphaericaexon
TCONS_00005298-exon-sc0000052-1491911889:616904..618254TCONS_00005298-exon-sc0000052-1491911889:616904..618254Clytia hemisphaericaexon
TCONS_00005298-exon-sc0000052-1510915933:616904..618254TCONS_00005298-exon-sc0000052-1510915933:616904..618254Clytia hemisphaericaexon
TCONS_00005298-exon-sc0000052-1575043694:616904..618254TCONS_00005298-exon-sc0000052-1575043694:616904..618254Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000052supercontigsc0000052:608242..618254 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
327.221	334.57	349.795	352.782	347.668	229.69	246.418	263.146	193.849	174.005	180.551	181.088	260.805	262.801	258.179	263.949	192.594	196.121	233.331	217.681	220.325	207.975	231.166	238.304	155.581	180.008	165.86	188.932	253.271	245.213
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
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BLAST of TCONS_00005298 vs. Swiss-Prot (Human)
Match: RAB7A (Ras-related protein Rab-7a OS=Homo sapiens GN=RAB7A PE=1 SV=1)

HSP 1 Score: 374.785 bits (961), Expect = 2.620e-126
Identity = 178/207 (85.99%), Postives = 188/207 (90.82%), Query Frame = 3 
Query:  111 MSSRKKVLLKVIILGDSGVGKTSLMNQYVTKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNSFKTLDSWRDEFLIQASPRDPENFPFVVLGNKVDLENRAVSAKRAQQWCHSKNEIPYFETSAKEGINVEHAFQAIARKALAQETEVELYNEFPDQIKLTNESKPRSS--DCAC 725
            M+SRKKVLLKVIILGDSGVGKTSLMNQYV KKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPN+FKTLDSWRDEFLIQASPRDPENFPFVVLGNK+DLENR V+ KRAQ WC+SKN IPYFETSAKE INVE AFQ IAR AL QETEVELYNEFP+ IKL    + ++S   C+C
Sbjct:    1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNDRAKASAESCSC 207
The following BLAST results are available for this feature:
BLAST of TCONS_00005298 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB7A2.620e-12685.99Ras-related protein Rab-7a OS=Homo sapiens GN=RAB7... [more]
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