TCONS_00004258-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004258-protein
Unique NameTCONS_00004258-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length260

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004258-protein ID=TCONS_00004258-protein|Name=TCONS_00004258-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MMRKSRQEEEEEKKTEEESTIESISFSSTDKNMFGLNKKTFVMYMTHFNI
VLYALCYWIQIGVLPYLTRKLGVDTQTFGILQSTFAFVQLCGGPVYGRFG
DLFGGKYSLILAFFACFTSYGLLAVAASIPVLFLSRLPSIAMHCMQGSQM
VLTDITSDNERASAIGRLGVSYGVGMVIGPLMGGFITDRFSEQTAAATAA
FGSIVSIVLVVLFIPANTKLIKEVDEKTEIKVASGAVFDFKKYSSIFAAP
NFLYVFMIKX
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002364XLOC_002364Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004258TCONS_00004258Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001958Tet-R_TetA/multi-R_MdtG
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005215 transporter activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001958Tetracycline resistance protein TetA/multidrug resistance protein MdtGPRINTSPR01035TCRTETAcoord: 52..68
score: 35.29
coord: 109..133
score: 25.2
coord: 165..187
score: 43.04
IPR011701Major facilitator superfamilyPFAMPF07690MFS_1coord: 48..253
e-value: 5.6E-26
score: 91.2
NoneNo IPR availableGENE3D1.20.1250.20coord: 3..235
e-value: 7.1E-28
score: 96.8
IPR020846Major facilitator superfamily domainPROSITEPS50850MFScoord: 42..260
score: 12.526
IPR020846Major facilitator superfamily domainCDDcd06174MFScoord: 48..216
e-value: 1.93763E-14
score: 69.6501
IPR020846Major facilitator superfamily domainSUPERFAMILY103473MFS general substrate transportercoord: 35..220

Blast
[Close]
BLAST of TCONS_00004258-protein vs. Swiss-Prot (Human)
Match: S22AI (Solute carrier family 22 member 18 OS=Homo sapiens GN=SLC22A18 PE=1 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 7.217e-35
Identity = 86/226 (38.05%), Postives = 135/226 (59.73%), Query Frame = 0 
Query:   39 KTFVMYMTHFNIVLYALCYWIQIGVLPYLTRKLGVDTQTFGILQSTFAFVQLCGGPVYGRFGDLFGGKYSLILAFFACFTSYGLLAVA--ASIP---VLFLSRLPSIAMHCMQGSQMVLTDITSDNERASAIGRLGVSYGVGMVIGPLMGGFITDRFSEQTAAATAAFGSIVSIVLVVLFIPANTKLIKEVDEKTEIKVASGAVFDFKKYSSIFAAPNFLYVFMIK 259
            ++ V+ +T+        C ++Q  ++PYL+RKLG+D+  FG LQ+TF  +QL GGPV+GRF D  G + +L L+F A    Y LLA A   ++P   +LF SRLP   MH +  +QMV+TD+++  ER +A+GRLG+ +GVG+++G L+GG +   +  Q  A  AA  +++  VL    IPA+TK  K   +         +VFD K  +S+   P+   +F++K
Sbjct:   22 RSSVILLTYVLAATELTCLFMQFSIVPYLSRKLGLDSIAFGYLQTTFGVLQLLGGPVFGRFADQRGARAALTLSFLAALALYLLLAAASSPALPGVYLLFASRLPGALMHTLPAAQMVITDLSAPEERPAALGRLGLCFGVGVILGSLLGGTLVSAYGIQCPAILAALATLLGAVLSFTCIPASTKGAKTDAQAPLPGGPRASVFDLKAIASLLRLPDVPRIFLVK 247
The following BLAST results are available for this feature:
BLAST of TCONS_00004258-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S22AI7.217e-3538.05Solute carrier family 22 member 18 OS=Homo sapiens... [more]
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