TCONS_00004101-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004101-protein
Unique NameTCONS_00004101-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length262

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004101-protein ID=TCONS_00004101-protein|Name=TCONS_00004101-protein|organism=Clytia hemisphaerica|type=polypeptide|length=262bp
MTIKVDAQQQTKMRLSSSPLPSINKKTFKIVVLGEKYCGKTALTVRYLTG
KFIYDYATGEDFIYPHQANLNNGDVQINIVDTSQNTVTSAIVDADGVIIV
YAINSKSSFHRAEELLKHVVAVSCKPSIAIAANKSDMWHYRTVMRSDGEY
LAKQYGCKYFELSALTDYEKVQRMFNVMLKLMNDRHTDKELIESKSAIVI
NDSSPPPIEDFEGRRRARSLHLPKENKAVKVGQSKSPILFRKLIRSWNQS
SLSRSKSTEKLF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002285XLOC_002285Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004101TCONS_00004101Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 159..181
score: 20.82
coord: 124..137
score: 26.85
coord: 28..49
score: 37.76
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 25..185
e-value: 3.0E-15
score: 66.7
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 28..185
e-value: 3.8E-10
score: 16.9
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 30..183
e-value: 2.4E-4
score: -61.5
NoneNo IPR availableGENE3D3.40.50.300coord: 22..196
e-value: 1.7E-26
score: 92.1
NoneNo IPR availablePROSITEPS51419RABcoord: 22..230
score: 13.117
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 29..182
e-value: 8.6E-27
score: 93.6
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 26..180

Blast
[Close]
BLAST of TCONS_00004101-protein vs. Swiss-Prot (Human)
Match: RSLBB (Ras-like protein family member 11B OS=Homo sapiens GN=RASL11B PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.599e-21
Identity = 56/204 (27.45%), Postives = 99/204 (48.53%), Query Frame = 0 
Query:   24 NKKTFKIVVLGEKYCGKTALTVRYLTGKFIYDYATGEDFIYPHQANLNNGDVQINIVDTS-----QNTVTSA------IVDADGVIIVYAINSKSSFHRAEELLKHV--VAVSCKPSIAIAANKSDMWHYRTVMRSDGEYLAKQYGCKYFELSALTDYEKVQRMFNVMLKLMNDRHTDKELIESKSAIVINDSSPPPIEDFEGR 214
             ++  KI V+G    GKTAL VR+LT +FI DY      +Y  Q  +    + + + DT      +N+++ +      I  AD V+IV++I    S+    +L +HV  + +  +  + + ANK+D+ H + V    G  LA   GC ++E+S   +Y  V   F+V+ K ++ +       E +   +I     P ++D + R
Sbjct:   30 GRRLVKIAVVGASGVGKTALVVRFLTKRFIGDYERNAGNLYTRQVQIEGETLALQVQDTPGIQVHENSLSCSEQLNRCIRWADAVVIVFSITDYKSYELISQLHQHVQQLHLGTRLPVVVVANKADLLHIKQVDPQLGLQLASMLGCSFYEVSVSENYNDVYSAFHVLCKEVSHKQQPSSTPEKRRTSLIPRPKSPNMQDLKRR 233
The following BLAST results are available for this feature:
BLAST of TCONS_00004101-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RSLBB3.599e-2127.45Ras-like protein family member 11B OS=Homo sapiens... [more]
back to top