TCONS_00003938-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003938-protein
Unique NameTCONS_00003938-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length608

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003938-protein ID=TCONS_00003938-protein|Name=TCONS_00003938-protein|organism=Clytia hemisphaerica|type=polypeptide|length=608bp
MEIVYVYTKKRSEFGRQCNFSDRSAELHVDILPDEVLSQDYIERNPCHVG
IQCVQEMSEHEVNTERFECENRGMNHTEGGWPKDINPAEIEQTMRFRKKI
EKDEQYINTIQNLGDVMERCIQQNNAIDIYEEYFGNVIGDCINETPSAKT
INVFRDPNDIKRTATKISWFPDGAQKLAIAYSVLEFQKASPDTCFDSYIW
DIENPNKPDFTLKPVSPLVSIEYNPKDAHVLVAGSYNGQLGFWDTRKGSQ
PVEVTPIEKSHRDPVYDVKFIQSKTGTECFTTSTDGYIYWWDIRKLGEPT
EHLYLNKNPKENKPMGGLVLEYEPTMPTKFMVGTEQGVVLSCNRKAKTPA
DKIVCSFSQHYGPIYALQRNPFFPKNFLTVGDWVARLWSEDLRDSSIMWT
KMHMSCLTDGCWSPVRPGVFYSSRMDGVLDVWDYLFKQNEPTLSIQVCDE
PLNSIKVQDQGRLVACGSHQGTTTLIELSDSLCTLLRHEKSAINAMFERE
TKREKILEARHREMRLKERSRSQQEKERQEEEGHRGEDEEEDLIARAEED
FFNAITAEIDGRQKKFGERNEAFEKAKEAIQNDRLPFEAGDERSVNEEDG
DERTNQSS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002201XLOC_002201Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003938TCONS_00003938Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 393..433
e-value: 15.0
score: 9.6
coord: 350..389
e-value: 1.3
score: 16.3
coord: 438..477
e-value: 14.0
score: 9.8
coord: 250..292
e-value: 0.2
score: 20.7
coord: 205..244
e-value: 0.62
score: 18.3
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 153..543
e-value: 3.9E-35
score: 120.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 511..549
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 573..608
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 231..245
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 199..301
score: 11.946
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 163..475

Blast
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BLAST of TCONS_00003938-protein vs. Swiss-Prot (Human)
Match: DNAI2 (Dynein intermediate chain 2, axonemal OS=Homo sapiens GN=DNAI2 PE=1 SV=2)

HSP 1 Score: 776.163 bits (2003), Expect = 0.000e+0
Identity = 358/566 (63.25%), Postives = 449/566 (79.33%), Query Frame = 0 
Query:    1 MEIVYVYTKKRSEFGRQCNFSDRSAELHVDILPDEVLSQDYIERNPCHVGIQCVQEMSEHEVNTERFECENRGMNHTEGGWPKDINPAEIEQTMRFRKKIEKDEQYINTIQNLGDVMERCIQQNNAIDIYEEYFGNVIG-DCINETPSAKTINVFRDPNDIKRTATKISWFPDGAQKLAIAYSVLEFQKASPDTCFDSYIWDIENPNKPDFTLKPVSPLVSIEYNPKDAHVLVAGSYNGQLGFWDTRKGSQPVEVTPIEKSHRDPVYDVKFIQSKTGTECFTTSTDGYIYWWDIRKLGEPTEHLYLNKNPKEN--KPMGGLVLEYEPTMPTKFMVGTEQGVVLSCNRKAKTPADKIVCSFSQHYGPIYALQRNPFFPKNFLTVGDWVARLWSEDLRDSSIMWTKMHMSCLTDGCWSPVRPGVFYSSRMDGVLDVWDYLFKQNEPTLSIQVCDEPLNSIKVQDQGRLVACGSHQGTTTLIELSDSLCTLLRHEKSAINAMFERETKREKILEARHREMRLKERSRSQQEKERQEEEGHRGEDEEEDLIARAEEDFFNAITAEIDGRQ 563
            MEIVYVY KKRSEFG+QCNFSDR AEL++DI+P+  L++ ++ERNP   GIQC   MSEHE N+ERFE E RG+NH EGGWPKD+NP E+EQT+RFRKK+EKDE Y+N I  LG +ME CI+QNNAIDIYEEYF +    + + E PSAKTINVFRDP +IKR AT +SW PDG +KLA+AYS L+FQ+A      DSYIWD+ENPNKP+  LKP SPLV++E+NPKD+HVL+ G YNGQ+  WDTRKGS   E++ IE SHRDPVY   ++QSKTGTECF+ STDG + WWDIRK+ EPTE + L+   KE     +G + LE+E T+PTKFMVGTEQG+V+SCNRKAKT A+KIVC+F  H+GPIYALQRNPF+PKNFLTVGDW AR+WSED R+SSIMWTK HM+ LTD  WSPVRP VF+++RMDG LD+WD++F+Q +PTLS++VCDE L  ++VQD G L+ACGS  GTTTL+E+S  L TL R+EK+  ++MFERET+REKILEARHREMRLKE+ +++   E Q +E      + E L+++AEE+FF+ I AE+  ++
Sbjct:    1 MEIVYVYVKKRSEFGKQCNFSDRQAELNIDIMPNPELAEQFVERNPVDTGIQCSISMSEHEANSERFEMETRGVNHVEGGWPKDVNPLELEQTIRFRKKVEKDENYVNAIMQLGSIMEHCIKQNNAIDIYEEYFNDEEAMEVMEEDPSAKTINVFRDPQEIKRAATHLSWHPDGNRKLAVAYSCLDFQRAPVGMSSDSYIWDLENPNKPELALKPSSPLVTLEFNPKDSHVLLGGCYNGQIACWDTRKGSLVAELSTIESSHRDPVYGTIWLQSKTGTECFSASTDGQVMWWDIRKMSEPTEVVILDITKKEQLENALGAISLEFESTLPTKFMVGTEQGIVISCNRKAKTSAEKIVCTFPGHHGPIYALQRNPFYPKNFLTVGDWTARIWSEDSRESSIMWTKYHMAYLTDAAWSPVRPTVFFTTRMDGTLDIWDFMFEQCDPTLSLKVCDEALFCLRVQDNGCLIACGSQLGTTTLLEVSPGLSTLQRNEKNVASSMFERETRREKILEARHREMRLKEKGKAEGRDEEQTDE--ELAVDLEALVSKAEEEFFDIIFAELKKKE 564
The following BLAST results are available for this feature:
BLAST of TCONS_00003938-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DNAI20.000e+063.25Dynein intermediate chain 2, axonemal OS=Homo sapi... [more]
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