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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003938 ID=TCONS_00003938|Name=TCONS_00003938|organism=Clytia hemisphaerica|type=transcript|length=1956bpRun BLAST on NCBI protein sequence of TCONS_00003938-protein >TCONS_00003938-protein ID=TCONS_00003938-protein|Name=TCONS_00003938-protein|organism=Clytia hemisphaerica|type=polypeptide|length=608bp MEIVYVYTKKRSEFGRQCNFSDRSAELHVDILPDEVLSQDYIERNPCHVGRun BLAST on NCBI transcript from alignment at sc0000038:43946..61306- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003938 ID=TCONS_00003938|Name=TCONS_00003938|organism=Clytia hemisphaerica|type=transcript|length=17361bp|location=Sequence derived from alignment at sc0000038:43946..61306- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000038:43946..61306- >TCONS_00003938 ID=TCONS_00003938|Name=TCONS_00003938|organism=Clytia hemisphaerica|type=CDS|length=25536bp|location=Sequence derived from alignment at sc0000038:43946..61306- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003938 vs. Swiss-Prot (Human)
Match: DNAI2 (Dynein intermediate chain 2, axonemal OS=Homo sapiens GN=DNAI2 PE=1 SV=2) HSP 1 Score: 759.985 bits (1961), Expect = 0.000e+0 Identity = 355/566 (62.72%), Postives = 446/566 (78.80%), Query Frame = 2
Query: 131 MEIVYVYTKKRSEFGRQCNFSDRSAELHVDILPDEVLSQDYIERNPCHVGIQCVQEMSEHEVNTERFECENRGMNHTEGGWPKDINPAEIEQTMRFRKKIEKDEQYINTIQNLGDVMERCIQQNNAIDIYEEYFGNVIG-DCINETPSAKTINVFRDPNDIKRTATKISWFPDGAQKLAIAYSVLEFQKASPDTCFDSYIWDIENPNKPDFTLKPVSPLVSIEYNPKDAHVLVAGSYNGQLGFWDTRKGSQPVEVTPIEKSHRDPVYDVKFIQSKTGTECFTTSTDGYIYWWDIRKLGEPTEHLYLNKNPKEN--KPMGGLVLEYEPTMPTKFMVGTEQGVVLSCNRKAKTPADKIVCSFSQHYGPIYALQRNPFFPKNFLTVGDWVARLWSEDLRDSSIMWTKMHMSCLTDGCWSPVRPGVFYSSRMDGVLDVWDYLFKQNEPTLSIQVCDEPLNSIKVQDQGRLVACGSHQGTTTLIELSDSLCTLLRHEKSAINAMFERETKREKILEARHREMRLXXXXXXXXXXXXXXXXXXXXXXXXXXLIARAEEDFFNAITAEIDGRQ 1819
MEIVYVY KKRSEFG+QCNFSDR AEL++DI+P+ L++ ++ERNP GIQC MSEHE N+ERFE E RG+NH EGGWPKD+NP E+EQT+RFRKK+EKDE Y+N I LG +ME CI+QNNAIDIYEEYF + + + E PSAKTINVFRDP +IKR AT +SW PDG +KLA+AYS L+FQ+A DSYIWD+ENPNKP+ LKP SPLV++E+NPKD+HVL+ G YNGQ+ WDTRKGS E++ IE SHRDPVY ++QSKTGTECF+ STDG + WWDIRK+ EPTE + L+ KE +G + LE+E T+PTKFMVGTEQG+V+SCNRKAKT A+KIVC+F H+GPIYALQRNPF+PKNFLTVGDW AR+WSED R+SSIMWTK HM+ LTD WSPVRP VF+++RMDG LD+WD++F+Q +PTLS++VCDE L ++VQD G L+ACGS GTTTL+E+S L TL R+EK+ ++MFERET+REKILEARHREMRL + + + E +E+ + E L+++AEE+FF+ I AE+ ++
Sbjct: 1 MEIVYVYVKKRSEFGKQCNFSDRQAELNIDIMPNPELAEQFVERNPVDTGIQCSISMSEHEANSERFEMETRGVNHVEGGWPKDVNPLELEQTIRFRKKVEKDENYVNAIMQLGSIMEHCIKQNNAIDIYEEYFNDEEAMEVMEEDPSAKTINVFRDPQEIKRAATHLSWHPDGNRKLAVAYSCLDFQRAPVGMSSDSYIWDLENPNKPELALKPSSPLVTLEFNPKDSHVLLGGCYNGQIACWDTRKGSLVAELSTIESSHRDPVYGTIWLQSKTGTECFSASTDGQVMWWDIRKMSEPTEVVILDITKKEQLENALGAISLEFESTLPTKFMVGTEQGIVISCNRKAKTSAEKIVCTFPGHHGPIYALQRNPFYPKNFLTVGDWTARIWSEDSRESSIMWTKYHMAYLTDAAWSPVRPTVFFTTRMDGTLDIWDFMFEQCDPTLSLKVCDEALFCLRVQDNGCLIACGSQLGTTTLLEVSPGLSTLQRNEKNVASSMFERETRREKILEARHREMRL--KEKGKAEGRDEEQTDEELAVDLEALVSKAEEEFFDIIFAELKKKE 564 The following BLAST results are available for this feature:
BLAST of TCONS_00003938 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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