TCONS_00003872-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003872-protein
Unique NameTCONS_00003872-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length512

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003872-protein ID=TCONS_00003872-protein|Name=TCONS_00003872-protein|organism=Clytia hemisphaerica|type=polypeptide|length=512bp
MEEQHTSQDGDPQVPGYLVSEVVQNFIVYFYQQICDRNLFEIQQIYDEGF
NRLTEQYFTKCPWPEAESIAPLVQDDKLFLTLYKELYYRHIYSKLKPTIE
HRYQSYFNYCELFNYILDDTTPSSLVLPNQWMWDIIDEFIYQFQSFCQYR
AKIMNKTEDDIKSLKDNVHKVWNVHSVLNVLYCLVDTSRINEQLEVYSND
EDPDTVAGEYGKLPLYKMLGYFSLIGLLRLHSLLGDYHQAIKVLGSVDLN
KKSLYSRVPACQVTTYYYVGFAYMMMRRYEDAIRSFVNVLLYVQRAKHII
QTKSYQFEQIKKKVDQMYTLLCICLVLCPQRIDESVNQHLREKNLDKTLK
MQKGDISVFEECFSFACPKFISPIPPNYDNPPANSHLDPFNLQLRMFMVE
VQQQSIIPVIRSYLKLYTTMSIPKLASLSELDEGTLQTALLCFKHKQRNL
VWTKGSDALEGEFQSSPETDFFINNDMIHIADTKIARRYGDYFIRQINKI
DEINRNFVKMHS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002175XLOC_002175Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003872TCONS_00003872Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019382eIF3l
IPR011990TPR-like_helical_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005852eukaryotic translation initiation factor 3 complex
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
molecular_function GO:0005515 protein binding
molecular_function GO:0003743 translation initiation factor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019382Translation initiation factor 3 complex subunit LPFAMPF10255Paf67coord: 101..499
e-value: 1.3E-168
score: 561.1
IPR019382Translation initiation factor 3 complex subunit LHAMAPMF_03011eIF3lcoord: 1..502
score: 30.006
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 144..276
e-value: 0.002
score: 17.5
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 277..354
e-value: 0.0094
score: 15.4
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 221..312

Blast
[Close]
BLAST of TCONS_00003872-protein vs. Swiss-Prot (Human)
Match: EIF3L (Eukaryotic translation initiation factor 3 subunit L OS=Homo sapiens GN=EIF3L PE=1 SV=1)

HSP 1 Score: 641.343 bits (1653), Expect = 0.000e+0
Identity = 305/515 (59.22%), Postives = 389/515 (75.53%), Query Frame = 0 
Query:   18 LVSEVVQNFIVYFYQQICD--------------------RNLFEIQQIYDEGFNRLTEQYFTKCPWPEAESIAPLVQDDKLFLTLYKELYYRHIYSKLK--PTIEHRYQSYFNYCELFNYILDDTTPSSLVLPNQWMWDIIDEFIYQFQSFCQYRAKIMNKTEDDIKSLKDNVHKVWNVHSVLNVLYCLVDTSRINEQLEVYSNDEDPDTVAGEYGKLPLYKMLGYFSLIGLLRLHSLLGDYHQAIKVLGSVDLNKKSLYSRVPACQVTTYYYVGFAYMMMRRYEDAIRSFVNVLLYVQRAKHIIQTKSYQFEQIKKKVDQMYTLLCICLVLCPQRIDESVNQHLREKNLDKTLKMQKGDISVFEECFSFACPKFISPIPPNYDNPPANSHLDPFNLQLRMFMVEVQQQSIIPVIRSYLKLYTTMSIPKLASLSELDEGTLQTALLCFKHKQRNLVWTKGSDALEGEFQSSPETDFFINNDMIHIADTKIARRYGDYFIRQINKIDEINRNFVKM 510
            ++ EV++NFI YF++ + D                    + ++EIQ IY+  + +LTE++F   PWPEAE+IAP V +D +FL LYKELYYRHIY+K+   P++E R++SY+NYC LFNYIL+   P+ L LPNQW+WDIIDEFIYQFQSF QYR K   K+E++I  L+ N  K+WNVHSVLNVL+ LVD S IN QLEVY++  DP++VAGEYG+  LYKMLGYFSL+GLLRLHSLLGDY+QAIKVL +++LNKKS+YSRVP CQVTTYYYVGFAY+MMRRY+DAIR F N+LLY+QR K + Q  +Y++E I K+ +QM+ LL I L + P RIDES++  LREK  DK L+MQKGD  V+EE FS++CPKF+SP+ PNYDN   N H +PF  QL++F  EVQQQ+ +  IRS+LKLYTTM + KLA   +L E   +  LL FKHK +NLVWT G  AL+GEFQS+ E DF+I+ DMIHIADTK+ARRYGD+FIRQI+K +E+NR   KM
Sbjct:   47 VIPEVIKNFIQYFHKTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAEAIAPQVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNP-KIWNVHSVLNVLHSLVDKSNINRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFSLVGLLRLHSLLGDYYQAIKVLENIELNKKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMINKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRMQKGDPQVYEELFSYSCPKFLSPVVPNYDNVHPNYHKEPFLQQLKVFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQEFRIQLLVFKHKMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTKVARRYGDFFIRQIHKFEELNRTLKKM 560
The following BLAST results are available for this feature:
BLAST of TCONS_00003872-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EIF3L0.000e+059.22Eukaryotic translation initiation factor 3 subunit... [more]
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