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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003872 ID=TCONS_00003872|Name=TCONS_00003872|organism=Clytia hemisphaerica|type=transcript|length=1922bpRun BLAST on NCBI protein sequence of TCONS_00003872-protein >TCONS_00003872-protein ID=TCONS_00003872-protein|Name=TCONS_00003872-protein|organism=Clytia hemisphaerica|type=polypeptide|length=512bp MEEQHTSQDGDPQVPGYLVSEVVQNFIVYFYQQICDRNLFEIQQIYDEGFRun BLAST on NCBI transcript from alignment at sc0000038:217994..250648+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003872 ID=TCONS_00003872|Name=TCONS_00003872|organism=Clytia hemisphaerica|type=transcript|length=32655bp|location=Sequence derived from alignment at sc0000038:217994..250648+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000038:217994..250648+ >TCONS_00003872 ID=TCONS_00003872|Name=TCONS_00003872|organism=Clytia hemisphaerica|type=CDS|length=26163bp|location=Sequence derived from alignment at sc0000038:217994..250648+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003872 vs. Swiss-Prot (Human)
Match: EIF3L (Eukaryotic translation initiation factor 3 subunit L OS=Homo sapiens GN=EIF3L PE=1 SV=1) HSP 1 Score: 610.912 bits (1574), Expect = 0.000e+0 Identity = 305/515 (59.22%), Postives = 389/515 (75.53%), Query Frame = 1
Query: 370 LVSEVVQNFIVYFYQQICD--------------------RNLFEIQQIYDEGFNRLTEQYFTKCPWPEAESIAPLVQDDKLFLTLYKELYYRHIYSKLK--PTIEHRYQSYFNYCELFNYILDDTTPSSLVLPNQWMWDIIDEFIYQFQSFCQYRAKIMNKTEDDIKSLKDNVHKVWNVHSVLNVLYCLVDTSRINEQLEVYSNDEDPDTVAGEYGKLPLYKMLGYFXXXXXXXXXXXXXDYHQAIKVLGSVDLNKKSLYSRVPACQVTTYYYVGFAYMMMRRYEDAIRSFVNVLLYVQRAKHIIQTKSYQFEQIKKKVDQMYTLLCICLVLCPQRIDESVNQHLREKNLDKTLKMQKGDISVFEECFSFACPKFISPIPPNYDNPPANSHLDPFNLQLRMFMVEVQQQSIIPVIRSYLKLYTTMSIPKLASLSELDEGTLQTALLCFKHKQRNLVWTKGSDALEGEFQSSPETDFFINNDMIHIADTKIARRYGDYFIRQINKIDEINRNFVKM 1848
++ EV++NFI YF++ + D + ++EIQ IY+ + +LTE++F PWPEAE+IAP V +D +FL LYKELYYRHIY+K+ P++E R++SY+NYC LFNYIL+ P+ L LPNQW+WDIIDEFIYQFQSF QYR K K+E++I L+ N K+WNVHSVLNVL+ LVD S IN QLEVY++ DP++VAGEYG+ LYKMLGYFSL+GLLRLHSLLGDY+QAIKVL +++LNKKS+YSRVP CQVTTYYYVGFAY+MMRRY+DAIR F N+LLY+QR K + Q +Y++E I K+ +QM+ LL I L + P RIDES++ LREK DK L+MQKGD V+EE FS++CPKF+SP+ PNYDN N H +PF QL++F EVQQQ+ + IRS+LKLYTTM + KLA +L E + LL FKHK +NLVWT G AL+GEFQS+ E DF+I+ DMIHIADTK+ARRYGD+FIRQI+K +E+NR KM
Sbjct: 47 VIPEVIKNFIQYFHKTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAEAIAPQVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNP-KIWNVHSVLNVLHSLVDKSNINRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFSLVGLLRLHSLLGDYYQAIKVLENIELNKKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMINKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRMQKGDPQVYEELFSYSCPKFLSPVVPNYDNVHPNYHKEPFLQQLKVFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQEFRIQLLVFKHKMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTKVARRYGDFFIRQIHKFEELNRTLKKM 560 The following BLAST results are available for this feature:
BLAST of TCONS_00003872 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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