TCONS_00002532 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002532
Unique NameTCONS_00002532
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length986

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002532 ID=TCONS_00002532|Name=TCONS_00002532|organism=Clytia hemisphaerica|type=transcript|length=986bp
CGGAAAAGCTGACATTTGACAAAGAAGCCTTGATCAAGGAAGTTAACAAT
ATGCCTGACAAAGCATTGattaatttttcttctcttgcAAGTAAATATGG
TATTGTTGGTGAGCGAGGTTGTTATTGGTCCTGCTGGTAGGAGAGAAAAT
GTGATAAGCCCTTTTGACAATCTACCAGCACAAAACGTTTTTGATGAGGT
CATGGCAAGAGGGTTGATTGATAGAAACTTTACAGGCAAACTCATCAAAA
AAAACCTAGAATCACTCTTGAAAGATTTTTTGCGTGGAGTTGTGAGACCA
CCCGCACTATGTCATGGAGATGTGATGGAGAGCATGGAATCGTTGAATCT
TTCGATGTACGAGGTTAGCCAAGTCGAGCCACTCCACGACTTGAAAGGTC
ATATACGAAACGTGTGGGATCTTCTACCCAGCCATCTTCCTGGTGAATTG
AAGAAAACTTTCGAAGAAAAACTGGCATTCGCTCTTGGCGAACATAAAGA
CAAGTACCGTGGTTGTGATTACCGGATCTCCGTGATTTCTGTCTACTCTA
GAATGAGGAGCAAATTCTCCACCGAAACTGAAGAACTCCTATATACCCTG
AAAGAGATATGCCGCCTATCATATCTTCAATCCACAGACCGTTCCTCGAA
AACTATTCTGAGGTTATATAACATGACGTTTTTACACTATTTACGATGCC
TGGAGATATTTGGTGAAATCCCCAGAATTGGAAAAGTATATGGGAGCTAC
TATGATTCATTAGTCATCCATCTTCCCGAACACTACAGAATCATTGCATT
GTCATCTTTGTACACAGAAAGTGAGGAAAGGATTTTCAATGGTCTTCGTG
GTATAGGCAGAGACACTACAAACCGTCACAAGGAATCTGTCCGAGATATG
GGTATTGTTAGATACCAAGCAGAAAAGAACTTCCAGCAGAAGTATTGTCA
CTCGAAATCCCATGTAGAttcaaagttttccaaatt
Run BLAST on NCBI

protein sequence of TCONS_00002532-protein

>TCONS_00002532-protein ID=TCONS_00002532-protein|Name=TCONS_00002532-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
MVLLVSEVVIGPAGRRENVISPFDNLPAQNVFDEVMARGLIDRNFTGKLI
KKNLESLLKDFLRGVVRPPALCHGDVMESMESLNLSMYEVSQVEPLHDLK
GHIRNVWDLLPSHLPGELKKTFEEKLAFALGEHKDKYRGCDYRISVISVY
SRMRSKFSTETEELLYTLKEICRLSYLQSTDRSSKTILRLYNMTFLHYLR
CLEIFGEIPRIGKVYGSYYDSLVIHLPEHYRIIALSSLYTESEERIFNGL
RGIGRDTTNRHKESVRDMGIVRYQAEKNFQQKYCHSKSHVDSKFSK
Run BLAST on NCBI

transcript from alignment at sc0000020:970655..973168-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002532 ID=TCONS_00002532|Name=TCONS_00002532|organism=Clytia hemisphaerica|type=transcript|length=2514bp|location=Sequence derived from alignment at sc0000020:970655..973168- (Clytia hemisphaerica)
CGGAAAAGCTGACATTTGACAAAGAAGCCTTGATCAAGGAAGTTAACAAT
ATGCCTGACAAAGCATTGGTAAGAAGCCCTAAGTTTTTAAATCTTCTTTG
AGTTACACTGTCAATAACGTTTTGTATTGGGCTTGATAGTAGTACTGCAA
TTTGTTCAAGCAACAATAAAGCAAAAACTACTAATGTATCTTTACAAAAT
AATATAGTAAATATGCTCCAGTCTAGCATGTTACCGGCCACCGAGTTCAC
TATCCGTGAGTGAACCAGCTCTGGAGTGGAAAGGGTAGCGAGGTTATGAT
ATTAAATACCCGGCTATTCCACAAAAGGTAACAATTTATGTAGTCATCAT
TATGTATATTATTACGTCTTTGATGACTGCAAAACGACTCAAATCTAAAG
CTGGTGTAGTTATCTTGAGATATTCTCTTCATTTGGGTATATCTGATATC
AAAACCACACAAAATTAACTCAAATTTTTAAGTTTATAATTGTAGGACTA
TTTTTGAGAAGTTTGAAAAAATTTTCCTGTAAAGTCTATCTTTTAATTCT
GTATTTAGAACTGCAAATTTTAGATTTTCAGTTCTTCATAATGAATTGAA
TGATAGATTATACGTGATGATACATATATTTTTATAAGCAACTCCATTTT
CACTACATGGCTAAGGTTGCTTAGCCTTTCAATCCTAATTTCTGGAAAAT
ATGTCTAGGTGCCCTCACAATTATTATACCTTAAAATGCATTTCAGGGCG
AGTGGTACCATTTCCATCTGATAGAATTTGTAAATATATTTTACTCCAAG
CCAGGTTGCTTATAAAAAAGTGTGTACTTATAATTTTGACANTTTACTCC
AAGCCAGGTTGCTTATAAAAAAGTGGGTACTTATAATTTTGACGGTTTGA
TTTCTTAAATTTAATTAATTGAAAGCTTTGTTTTTATTTTTAGATTAATT
TTTCTTCTCTTGCAAGTAAATATGGTATTGTTGGTGAGCGAGGTAGCAGT
GTTGTTATAGAGTTCCTAAACAACAGGAATGTAGACTATTCAAGACTGCA
TAACCCTTATATAAACCTACCCATGGTTATGATATTTCTCTTGATTTTTT
ACAACTTTATCAAATATGTTCTGAAAAAGTCGATCTTGCCTACCACTACA
ATGCCTTAATTATATGATCATATAAAAAATAAAATAATTTAATATCTCTG
TACCTTTGAGCTTGAATTCAATTGTTTTTTTTTCTAAGATCAAAAATCTT
TATTTACAGGTTGTTATTGGTCCTGCTGGTAGGAGAGAAAATGTGATAAG
CCCTTTTGACAATCTACCAGCACAAAACGTTTTTGATGAGGTCATGGCAA
GAGGGTTGATTGATAGAAACTTTACAGGCAAACTCATCAAAAAAAACCTA
GAATCACTCTTGAAAGATTTTTTGCGTGGAGTTGTGAGACCACCCGCACT
ATGTCATGGAGATGTGATGGAGAGCATGGAATCGTTGAATCTTTCGATGT
ACGAGGTTAGCCAAGTCGAGCCACTCCACGACTTGAAAGGTGAATAGGCT
GAATGATTCCGAGTTTCTTATTATTATCTTTTGTTATCTTTGTTCTCTAT
CTCGACTACTTATAATCTCAGATTTTTCTCTGTCTCAAAAAAGGAGATGG
TACCTTCAGGCTATATAGTCCTTTATTACCTTTTGTACTCTCCTTAAGCT
AGTTGATATCGTTTTATTTATATTTCCTTACAAGGTCATATACGAAACGT
GTGGGATCTTCTACCCAGCCATCTTCCTGGTGAATTGAAGAAAACTTTCG
AAGAAAAACTGGCATTCGCTCTTGGCGAACATAAAGACAAGTACCGTGGT
TGTGATTACCGGATCTCCGTGATTTCTGTCTACTCTAGAATGAGGAGCAA
ATTCTCCACCGAAACTGAAGAACTCCTATATACCCTGAAAGAGATATGCC
GCCTATCATATCTTCAATCCACAGACCGTTCCTCGAAAACTATTCTGAGG
TTATATAACATGACGTTTTTACACTATTTACGATGCCTGGAGATATTTGG
TGAAATCCCCAGAATTGGAAAAGTATATGGGAGCTACTATGATTCATTAG
TCATCCATCTTCCCGAACACTACAGAATCATTGCATTGTCATCTTTGTAC
ACAGAAAGTGAGGAAAGGATTTTCAATGGTCTTCGTGGTATAGGCAGAGA
CACTACAAACCGTCACAAGGAATCTGTCCGAGATATGGGTATTGTTAGGT
ACGCAATTTAAAAACTACACCATAATCATTAAACCTTTTCAACTTATGAT
AGATTGATTCGTTTTAAGAATTAAAAAAATACTCAGGGAATCAGATTAAC
TCGACTTACAATTTTACCCACTTTAATTTTTCTCAGTAGTAGGTTTGAGT
TATAATCATCAACTGTCATTCTATTCACCTTTGTTTTAGATACCAAGCAG
AAAAGAACTTCCAGCAGAAGTATTGTCACTCGAAATCCCATGTAGATTCA
AAGTTTTCCAAATT

Coding sequence (CDS) from alignment at sc0000020:970655..973168-

>TCONS_00002532 ID=TCONS_00002532|Name=TCONS_00002532|organism=Clytia hemisphaerica|type=CDS|length=3552bp|location=Sequence derived from alignment at sc0000020:970655..973168- (Clytia hemisphaerica)
ATACCAAGCAGAAAAGAACTTCCAGCAGAAGTATTGTCACTCGAAATCCC
ATGTAGATTCAAAGTTTTCCAAAGTCATATACGAAACGTGTGGGATCTTC
TACCCAGCCATCTTCCTGGTGAATTGAAGAAAACTTTCGAAGAAAAACTG
GCATTCGCTCTTGGCGAACATAAAGACAAGTACCGTGGTTGTGATTACCG
GATCTCCGTGATTTCTGTCTACTCTAGAATGAGGAGCAAATTCTCCACCG
AAACTGAAGAACTCCTATATACCCTGAAAGAGATATGCCGCCTATCATAT
CTTCAATCCACAGACCGTTCCTCGAAAACTATTCTGAGGTTATATAACAT
GACGTTTTTACACTATTTACGATGCCTGGAGATATTTGGTGAAATCCCCA
GAATTGGAAAAGTATATGGGAGCTACTATGATTCATTAGTCATCCATCTT
CCCGAACACTACAGAATCATTGCATTGTCATCTTTGTACACAGAAAGTGA
GGAAAGGATTTTCAATGGTCTTCGTGGTATAGGCAGAGACACTACAAACC
GTCACAAGGAATCTGTCCGAGATATGGGTATTGTTAGGTTGTTATTGGTC
CTGCTGGTAGGAGAGAAAATGTGATAAGCCCTTTTGACAATCTACCAGCA
CAAAACGTTTTTGATGAGGTCATGGCAAGAGGGTTGATTGATAGAAACTT
TACAGGCAAACTCATCAAAAAAAACCTAGAATCACTCTTGAAAGATTTTT
TGCGTGGAGTTGTGAGACCACCCGCACTATGTCATGGAGATGTGATGGAG
AGCATGGAATCGTTGAATCTTTCGATGTACGAGGTTAGCCAAGTCGAGCC
ACTCCACGACTTGAAAGATGGTATTGTTGGTGAGCGAGATACCAAGCAGA
AAAGAACTTCCAGCAGAAGTATTGTCACTCGAAATCCCATGTAGATTCAA
AGTTTTCCAAAGTCATATACGAAACGTGTGGGATCTTCTACCCAGCCATC
TTCCTGGTGAATTGAAGAAAACTTTCGAAGAAAAACTGGCATTCGCTCTT
GGCGAACATAAAGACAAGTACCGTGGTTGTGATTACCGGATCTCCGTGAT
TTCTGTCTACTCTAGAATGAGGAGCAAATTCTCCACCGAAACTGAAGAAC
TCCTATATACCCTGAAAGAGATATGCCGCCTATCATATCTTCAATCCACA
GACCGTTCCTCGAAAACTATTCTGAGGTTATATAACATGACGTTTTTACA
CTATTTACGATGCCTGGAGATATTTGGTGAAATCCCCAGAATTGGAAAAG
TATATGGGAGCTACTATGATTCATTAGTCATCCATCTTCCCGAACACTAC
AGAATCATTGCATTGTCATCTTTGTACACAGAAAGTGAGGAAAGGATTTT
CAATGGTCTTCGTGGTATAGGCAGAGACACTACAAACCGTCACAAGGAAT
CTGTCCGAGATATGGGTATTGTTAGGTTGTTATTGGTCCTGCTGGTAGGA
GAGAAAATGTGATAAGCCCTTTTGACAATCTACCAGCACAAAACGTTTTT
GATGAGGTCATGGCAAGAGGGTTGATTGATAGAAACTTTACAGGCAAACT
CATCAAAAAAAACCTAGAATCACTCTTGAAAGATTTTTTGCGTGGAGTTG
TGAGACCACCCGCACTATGTCATGGAGATGTGATGGAGAGCATGGAATCG
TTGAATCTTTCGATGTACGAGGTTAGCCAAGTCGAGCCACTCCACGACTT
GAAAGATGGTATTGTTGGTGAGCGAGATACCAAGCAGAAAAGAACTTCCA
GCAGAAGTATTGTCACTCGAAATCCCATGTAGATTCAAAGTTTTCCAAAG
TCATATACGAAACGTGTGGGATCTTCTACCCAGCCATCTTCCTGGTGAAT
TGAAGAAAACTTTCGAAGAAAAACTGGCATTCGCTCTTGGCGAACATAAA
GACAAGTACCGTGGTTGTGATTACCGGATCTCCGTGATTTCTGTCTACTC
TAGAATGAGGAGCAAATTCTCCACCGAAACTGAAGAACTCCTATATACCC
TGAAAGAGATATGCCGCCTATCATATCTTCAATCCACAGACCGTTCCTCG
AAAACTATTCTGAGGTTATATAACATGACGTTTTTACACTATTTACGATG
CCTGGAGATATTTGGTGAAATCCCCAGAATTGGAAAAGTATATGGGAGCT
ACTATGATTCATTAGTCATCCATCTTCCCGAACACTACAGAATCATTGCA
TTGTCATCTTTGTACACAGAAAGTGAGGAAAGGATTTTCAATGGTCTTCG
TGGTATAGGCAGAGACACTACAAACCGTCACAAGGAATCTGTCCGAGATA
TGGGTATTGTTAGGTTGTTATTGGTCCTGCTGGTAGGAGAGAAAATGTGA
TAAGCCCTTTTGACAATCTACCAGCACAAAACGTTTTTGATGAGGTCATG
GCAAGAGGGTTGATTGATAGAAACTTTACAGGCAAACTCATCAAAAAAAA
CCTAGAATCACTCTTGAAAGATTTTTTGCGTGGAGTTGTGAGACCACCCG
CACTATGTCATGGAGATGTGATGGAGAGCATGGAATCGTTGAATCTTTCG
ATGTACGAGGTTAGCCAAGTCGAGCCACTCCACGACTTGAAAGATGGTAT
TGTTGGTGAGCGAGATACCAAGCAGAAAAGAACTTCCAGCAGAAGTATTG
TCACTCGAAATCCCATGTAGATTCAAAGTTTTCCAAAGTCATATACGAAA
CGTGTGGGATCTTCTACCCAGCCATCTTCCTGGTGAATTGAAGAAAACTT
TCGAAGAAAAACTGGCATTCGCTCTTGGCGAACATAAAGACAAGTACCGT
GGTTGTGATTACCGGATCTCCGTGATTTCTGTCTACTCTAGAATGAGGAG
CAAATTCTCCACCGAAACTGAAGAACTCCTATATACCCTGAAAGAGATAT
GCCGCCTATCATATCTTCAATCCACAGACCGTTCCTCGAAAACTATTCTG
AGGTTATATAACATGACGTTTTTACACTATTTACGATGCCTGGAGATATT
TGGTGAAATCCCCAGAATTGGAAAAGTATATGGGAGCTACTATGATTCAT
TAGTCATCCATCTTCCCGAACACTACAGAATCATTGCATTGTCATCTTTG
TACACAGAAAGTGAGGAAAGGATTTTCAATGGTCTTCGTGGTATAGGCAG
AGACACTACAAACCGTCACAAGGAATCTGTCCGAGATATGGGTATTGTTA
GGTTGTTATTGGTCCTGCTGGTAGGAGAGAAAATGTGATAAGCCCTTTTG
ACAATCTACCAGCACAAAACGTTTTTGATGAGGTCATGGCAAGAGGGTTG
ATTGATAGAAACTTTACAGGCAAACTCATCAAAAAAAACCTAGAATCACT
CTTGAAAGATTTTTTGCGTGGAGTTGTGAGACCACCCGCACTATGTCATG
GAGATGTGATGGAGAGCATGGAATCGTTGAATCTTTCGATGTACGAGGTT
AGCCAAGTCGAGCCACTCCACGACTTGAAAGATGGTATTGTTGGTGAGCG
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001353XLOC_001353Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002532-exon-sc0000020-1575043694:973101..973168TCONS_00002532-exon-sc0000020-1575043694:973101..973168Clytia hemisphaericaexon
TCONS_00002532-exon-sc0000020-1575043694:972177..972225TCONS_00002532-exon-sc0000020-1575043694:972177..972225Clytia hemisphaericaexon
TCONS_00002532-exon-sc0000020-1575043694:971630..971909TCONS_00002532-exon-sc0000020-1575043694:971630..971909Clytia hemisphaericaexon
TCONS_00002532-exon-sc0000020-1575043694:970921..971434TCONS_00002532-exon-sc0000020-1575043694:970921..971434Clytia hemisphaericaexon
TCONS_00002532-exon-sc0000020-1575043694:970655..970729TCONS_00002532-exon-sc0000020-1575043694:970655..970729Clytia hemisphaericaexon
TCONS_00002532-exon-sc0000020-1510915933:973101..973168TCONS_00002532-exon-sc0000020-1510915933:973101..973168Clytia hemisphaericaexon
TCONS_00002532-exon-sc0000020-1510915933:972177..972225TCONS_00002532-exon-sc0000020-1510915933:972177..972225Clytia hemisphaericaexon
TCONS_00002532-exon-sc0000020-1510915933:971630..971909TCONS_00002532-exon-sc0000020-1510915933:971630..971909Clytia hemisphaericaexon
TCONS_00002532-exon-sc0000020-1510915933:970921..971434TCONS_00002532-exon-sc0000020-1510915933:970921..971434Clytia hemisphaericaexon
TCONS_00002532-exon-sc0000020-1510915933:970655..970729TCONS_00002532-exon-sc0000020-1510915933:970655..970729Clytia hemisphaericaexon
TCONS_00002532-exon-sc0000020-1491911889:973101..973168TCONS_00002532-exon-sc0000020-1491911889:973101..973168Clytia hemisphaericaexon
TCONS_00002532-exon-sc0000020-1491911889:972177..972225TCONS_00002532-exon-sc0000020-1491911889:972177..972225Clytia hemisphaericaexon
TCONS_00002532-exon-sc0000020-1491911889:971630..971909TCONS_00002532-exon-sc0000020-1491911889:971630..971909Clytia hemisphaericaexon
TCONS_00002532-exon-sc0000020-1491911889:970921..971434TCONS_00002532-exon-sc0000020-1491911889:970921..971434Clytia hemisphaericaexon
TCONS_00002532-exon-sc0000020-1491911889:970655..970729TCONS_00002532-exon-sc0000020-1491911889:970655..970729Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002532-proteinTCONS_00002532-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:970655..973168 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.366248	0.223353	0.0757336	0.054957	0.0496394	0.0610697	0.0462596	0.0347747	0	0.0630728	0	0	0	0	0	0	0	0	0	0	0	0.0479312	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002532 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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