Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00003350-protein ID=TCONS_00003350-protein|Name=TCONS_00003350-protein|organism=Clytia hemisphaerica|type=polypeptide|length=423bp Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
Term Definition
GO:0046872 metal ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0046872 metal ion binding
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
50 100 150 200 250 300 350 400 Expect = 9.7E-4 / Score = 28.4 Expect = 5.0E-8 / Score = 33.2 Score = 10.414 Expect = 0.0023 / Score = 27.2 Score = 11.604 Expect = 1.26699E-7 / Score = 47.0552 Expect = 2.7E-10 / Score = 39.0 Expect = 3.7E-22 / Score = 77.9 Score = Expect = 2.00498E-13 / Score = 65.722 Score = Expect = 1.4E-5 / Score = 24.8 Score = Score = Score = Sequence SM00490 PF00271 PS51194 SM00184 PS50089 cd00162 G3DSA:3.30.40.10 G3DSA:3.40.50.300 mobidb-lite cd00079 SSF57850 PF00097 PS00518 SSF52540
IPR Term IPR Description Source Source Term Source Description Alignment
IPR001650 Helicase, C-terminal SMART SM00490 helicmild6 coord: 258..340 IPR001650 Helicase, C-terminal PFAM PF00271 Helicase_C coord: 232..340 IPR001650 Helicase, C-terminal PROSITE PS51194 HELICASE_CTER coord: 230..382 IPR001841 Zinc finger, RING-type SMART SM00184 ring_2 coord: 134..178 IPR001841 Zinc finger, RING-type PROSITE PS50089 ZF_RING_2 coord: 134..179 IPR001841 Zinc finger, RING-type CDD cd00162 RING coord: 134..180 IPR013083 Zinc finger, RING/FYVE/PHD-type GENE3D 3.30.40.10 coord: 118..204 None No IPR available GENE3D 3.40.50.300 coord: 214..378 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 392..423 None No IPR available CDD cd00079 HELICc coord: 227..347 None No IPR available SUPERFAMILY 57850 RING/U-box coord: 133..182 IPR018957 Zinc finger, C3HC4 RING-type PFAM PF00097 zf-C3HC4 coord: 134..178 IPR017907 Zinc finger, RING-type, conserved site PROSITE PS00518 ZF_RING_1 coord: 150..159 IPR027417 P-loop containing nucleoside triphosphate hydrolase SUPERFAMILY 52540 P-loop containing nucleoside triphosphate hydrolases coord: 218..397
Blast
BLAST of TCONS_00003350-protein vs. Swiss-Prot (Human)
Match:
SHPRH (E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens GN=SHPRH PE=1 SV=2)
HSP 1 Score: 285.804 bits (730), Expect = 7.709e-86
Identity = 161/402 (40.05%), Postives = 232/402 (57.71%), Query Frame = 0
Query: 1 MKFMSTSAQHLRMEQRVVEAGRHQLKYFDKLKKEFNLIRSLYLACHGRVQAIDELEMCISRLRFPTHYEEMTEGFCEARNDIVRLGEVSQTRYALLSDRVTASEELKLKNGQMAYLQNLAKVQEDNNGS-NPEPCPICVFPLGSEWAVMTCGHSVCCKCMTTL--QKRSNYKRAAIQCPMCRAQSKLTAISIVTAKPAAVKSTDTDRASSDSNDDILDANISVQGNFSTKIEAVVRRILWIQIEQPKAKTLVFSTWTNVLKVISQALSVNNVEFKSLAGAHPKQFERFLTFFKENEICNVLLLPLHSGAKGLNIIEASHLILTEPALNPSDELQAVGRVHRIGQDKETYVHRFFVRDTVEEKMYHLFKPK-----STQGENTLENELTVDDVVNLIQKTQDE 394
MK + + A+ R + V+ G + F+ KKE+ L+ ++A RV A+DEL M RLR E I+ EV Q R LL+D+ A+ +L+ K GQ+ YL NL K Q+ +G NPEPCPIC LG +WAV+TCGH C +C++ + Q R++I+C +CR + IS V A + D I V+G+ STK+EAVVR ++ IQ+ P AK LVFSTW +VL +IS+AL+ NN+EF ++ K F+ L+ FK + N+LLLPLH+G+ GL IIEA+H++L EP LNP+ ELQA+GRVHRIGQ K T VHRF ++ T+EE+M + K ++ +++ + LTV D+ +L K +E
Sbjct: 1301 MKAILSFAKSHRFDVEFVDEGSTSMDLFEAWKKEYKLLHEYWMALRNRVSAVDELAMATERLRVRDPREPKPN---PPVLHIIEPHEVEQNRIKLLNDKAVATSQLQKKLGQLLYLTNLEKSQDKTSGGVNPEPCPICARQLGKQWAVLTCGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISYVFTSEKANQEED----------------IPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRV--KTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQAMLKTAERSHTNSSAKHSEASVLTVADLADLFTKETEE 1681
The following BLAST results are available for this feature:
BLAST of TCONS_00003350-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (
Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens) )
Total hits: 1
M K F M S T S A Q H L R M E Q R V V E A G R H Q L K Y F D K L K K E F N L I R S L Y L A C H G R V Q A I D E L E M C I S R L R F P T H Y E E M T E G F C E A R N D I V R L G E V S Q T R Y A L L S D R V T A S E E L K L K N G Q M A Y L Q N L A K V Q E D N N G S N P E P C P I C V F P L G S E W A V M T C G H S V C C K C M T T L Q K R S N Y K R A A I Q C P M C R A Q S K L T A I S I V T A K P A A V K S T D T D R A S S D S N D D I L D A N I S V Q G N F S T K I E A V V R R I L W I Q I E Q P K A K T L V F S T W T N V L K V I S Q A L S V N N V E F K S L A G A H P K Q F E R F L T F F K E N E I C N V L L L P L H S G A K G L N I I E A S H L I L T E P A L N P S D E L Q A V G R V H R I G Q D K E T Y V H R F F V R D T V E E K M Y H L F K P K S T Q G E N T L E N E L T V D D V V N L I Q K T Q D E E G D V F A S D S G D D E N T T D G E D E G E D D G Y F F 50 100 150 200 250 300 350 400 Expect = 7.71e-86 / Id = 40.05 Sequence SHPRH
Match Name E-value Identity Description
SHPRH 7.709e-86 40.05 E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens ... [more]
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