TCONS_00003103-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003103-protein
Unique NameTCONS_00003103-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length138

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003103-protein ID=TCONS_00003103-protein|Name=TCONS_00003103-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
ISMSAIATNGVVPAGGSYFMISRSLGPEFGGAVGVLFYLGTSFASAMYIL
GAVEILLTYIAPDISLFGNVQSSDGTISTAMLNNMRVYGTFLVILLGSLV
FVGVKYVNKCASIFLACVLLSILAIFIGFFVVHTQDVP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001723XLOC_001723Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003103TCONS_00003103Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004841AA-permease/SLC12A_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0055085transmembrane transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
biological_process GO:0006810 transport
cellular_component GO:0016020 membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004841Amino acid permease/ SLC12A domainPFAMPF00324AA_permeasecoord: 1..136
e-value: 1.6E-13
score: 50.0

Blast
[Close]
BLAST of TCONS_00003103-protein vs. Swiss-Prot (Human)
Match: S12A4 (Solute carrier family 12 member 4 OS=Homo sapiens GN=SLC12A4 PE=1 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 1.783e-52
Identity = 92/128 (71.88%), Postives = 107/128 (83.59%), Query Frame = 0 
Query:    1 ISMSAIATNGVVPAGGSYFMISRSLGPEFGGAVGVLFYLGTSFASAMYILGAVEILLTYIAPDISLFGNVQSSDGTISTAMLNNMRVYGTFLVILLGSLVFVGVKYVNKCASIFLACVLLSILAIFIG 128
            ISMSAIATNGVVPAGGSYFMISRSLGPEFGGAVG+ FYLGT+FA+AMYILGA+EILLTYIAP  ++F    + D   S A LNNMRVYGT  +  +  +VFVGVKYVNK AS+FLACV++SIL+I+ G
Sbjct:  169 ISMSAIATNGVVPAGGSYFMISRSLGPEFGGAVGLCFYLGTTFAAAMYILGAIEILLTYIAPPAAIFYPSGAHD--TSNATLNNMRVYGTIFLTFMTLVVFVGVKYVNKFASLFLACVIISILSIYAG 294
The following BLAST results are available for this feature:
BLAST of TCONS_00003103-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S12A41.783e-5271.88Solute carrier family 12 member 4 OS=Homo sapiens ... [more]
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