TCONS_00002088-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002088-protein
Unique NameTCONS_00002088-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length360

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002088-protein ID=TCONS_00002088-protein|Name=TCONS_00002088-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp
MHGMSLVKVXAECLSKALKLNPNLIDAWNELGESYWKNKDIDAAYNCFTQ
ANSKEKNKVSLRNLSMVQRQIGKDFESKIKNIKESVTTAKQAVSLDVTDG
KSWFILGNAYLSCFFSTGQNPSDIKQAMVAYSRAEKDKCSQVNPDLHYNK
AVAFKYEEDFPNAMKGYEMARKLDPEWDQPKEELADLKKRLKASVELTRN
KAGLKPKRVQTLLNAFKDTDYGPYQTGVYTSPLNNKIELTRTKFEELNAG
RNPNKVACGKVVAMVPVTDSFPFPCILMDASSDCIVVSVFNLANGKGLLL
GDTVAIPEPFVQNNAFSIENEELSFKSIRVDNPIVLVVNRRKVGPERLQY
GQLSFINKSE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001093XLOC_001093Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002088TCONS_00002088Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom
IPR032076TTC5_OB
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 181..201
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 144..177
e-value: 0.11
score: 21.7
coord: 25..58
e-value: 0.13
score: 21.4
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 25..58
score: 8.526
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 144..177
score: 7.788
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 9..40
e-value: 2.7E-7
score: 30.0
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 41..78
e-value: 2.4E-4
score: 20.5
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 79..196
e-value: 4.3E-13
score: 48.8
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 12..187
IPR032076Tetratricopeptide repeat protein 5, OB fold domainPFAMPF16669TTC5_OBcoord: 239..348
e-value: 6.8E-32
score: 109.5
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 144..177
score: 8.115
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 1..58
score: 10.17

Blast
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BLAST of TCONS_00002088-protein vs. Swiss-Prot (Human)
Match: TTC5 (Tetratricopeptide repeat protein 5 OS=Homo sapiens GN=TTC5 PE=1 SV=2)

HSP 1 Score: 284.263 bits (726), Expect = 9.038e-93
Identity = 143/335 (42.69%), Postives = 207/335 (61.79%), Query Frame = 0 
Query:   12 ECLSKALKLNPNLIDAWNELGESYWKNKDIDAAYNCFTQANSKEKNKVSLRNLSMVQRQIGKDFESKI-KNIKESVTTAKQAVSLDVTDGKSWFILGNAYLSCFFSTGQNPSDIKQAMVAYSRAEK-DKCSQVNPDLHYNKAVAFKYEEDFPNAMKGYEMARKLDPEWDQPKEELADLKKRLKASVELTRNKAGLKPKRVQTLLNAFKDTDYGPYQTGVYTSPLNNKIELTRTKFEELNAGRNPNKVACGKVVAMVPVTDSFPFPCILMDASSDCIVVSVFNLANGKGLLLGDTVAIPEPFVQNNAFSIENEELSFKSIRVDNPIVLVVNRRKVG 344
            E LSKA+KL P L++AWN+LGE YWK  D+ AA+ CF+ A +  +NKVSL+NLSMV RQ+  D E +   ++ +SV  AK AV +DV DG+SW+ILGN+YLS +FSTGQNP   +QA+ AY++AEK D+ +  NPDLH N+A   KYEE +  A++G+  A  LDP W +P++    L + L     L  +K  +K K++Q++L + +    GP   G Y S    K+ L       L  G N   V  GKVV  +   +  PF   L+D+   C  V V+N+    G+L+GD+VAIPEP ++ +    + ++ SF S+RV+ P++LVVN +  G
Sbjct:   90 ELLSKAVKLEPELVEAWNQLGEVYWKKGDVAAAHTCFSGALTHCRNKVSLQNLSMVLRQLRTDTEDEHSHHVMDSVRQAKLAVQMDVHDGRSWYILGNSYLSLYFSTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSRAAALDPAWPEPRQREQQLLEFLDRLTSLLESKGKVKTKKLQSMLGSLRPAHLGPCSDGHYQSASGQKVTLELKPLSTLQPGVNSGAVILGKVVFSLTTEEKVPFTFGLVDSDGPCYAVMVYNIVQSWGVLIGDSVAIPEPNLRLHRIQHKGKDYSFSSVRVETPLLLVVNGKPQG 424
The following BLAST results are available for this feature:
BLAST of TCONS_00002088-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TTC59.038e-9342.69Tetratricopeptide repeat protein 5 OS=Homo sapiens... [more]
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