TCONS_00001605-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00001605-protein
Unique NameTCONS_00001605-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length759

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00001605-protein ID=TCONS_00001605-protein|Name=TCONS_00001605-protein|organism=Clytia hemisphaerica|type=polypeptide|length=759bp
MKLNIDGLLVLFPYDYIYPEQYSYMFELKKSLDAKGHCLLEMPSGTGKTV
SLLSLIVAYLREKPQHLSKLIYCSRTVPELEKVLEELKKLMEYYEKETGE
PLKMLGLALSSRKNLCIKPEVASLKEGKKVDGMCHALTASYVRAKHQNQP
GIPVCSFFEDFDAKGREEPLPYGIYNLEDLKSYGQKMGWCPYFLARYAMS
HANIVVYSYHYLLDPKIAELVSKDIPRSCAVVFDEAHNIDNVCIESMTCH
ITRRALDKCHNNIETLTENINRLKNQDADRLRTEYDRLVQGLQDARVARD
TDVQLANPVLPDEVLEEAVPGNIRQAEHFVAFMRRFIEYLKTRLRVQHVV
SETPPSFLQHINQQVCIDRKPLRFCAERLRSLLQTLEITDIADFGGLGLV
AGFATLVSTYSKGFVIIIEPFDDQTPTIPNPILHFCCLDASVAIKPVFDR
FQTVVITSGTLSPVDMYPKLLDFVPANIATFTMTLSRQCVMPMICSKGND
QVAISSKFETREDMAVIRNYGNLLVEMTASVPDGIVCFFVSYLYMESVVT
VWHEQGVISNVQKNKLLFIETQDGTETALALYNYQKACENGRGAVLLSVA
RGKVSEGIDFDHHLGRAVIMFGIPYVYTQSRILKARLEYLRDQFNIREND
FLTFDAMRHAAQCVGRAIRGKTDYGIMVFADKRYSKADKKGKLPKWIQEH
MKEANCNLTIDEAIQVSKRFLRQMAQPFSRDDQLGLSLLTVEQVESDDFK
ARIRSAAQA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000836XLOC_000836Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00001605TCONS_00001605Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001945RAD3/XPD
IPR006555ATP-dep_Helicase_C
IPR006554Helicase-like_DEXD_c2
IPR010643HBB
IPR013020DNA_helicase_DNA-repair_Rad3
IPR010614DEAD_2
IPR014013Helic_SF1/SF2_ATP-bd_DinG/Rad3
IPR027417P-loop_NTPase
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0016818hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0005524ATP binding
GO:0004003ATP-dependent DNA helicase activity
GO:0003677DNA binding
GO:0003676nucleic acid binding
GO:0008026ATP-dependent helicase activity
Vocabulary: Biological Process
TermDefinition
GO:0006289nucleotide-excision repair
GO:0006139nucleobase-containing compound metabolic process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006139 nucleobase-containing compound metabolic process
biological_process GO:0006289 nucleotide-excision repair
cellular_component GO:0005634 nucleus
molecular_function GO:0005524 ATP binding
molecular_function GO:0004003 ATP-dependent DNA helicase activity
molecular_function GO:0008026 ATP-dependent helicase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 256..276
NoneNo IPR availableCOILSCoilCoilcoord: 77..100
NoneNo IPR availableGENE3D3.40.50.300coord: 16..364
e-value: 4.2E-21
score: 74.7
IPR001945RAD3/XPD familyPRINTSPR00852XRODRMPGMNTDcoord: 273..292
score: 55.0
coord: 403..421
score: 81.2
coord: 372..394
score: 75.78
coord: 492..509
score: 74.6
coord: 333..354
score: 65.58
coord: 707..727
score: 69.39
coord: 308..326
score: 78.95
coord: 636..658
score: 86.96
coord: 8..25
score: 85.71
IPR006555ATP-dependent helicase, C-terminalSMARTSM00491Cxpdneu3coord: 542..686
e-value: 2.8E-72
score: 256.1
IPR006555ATP-dependent helicase, C-terminalPFAMPF13307Helicase_C_2coord: 525..699
e-value: 6.0E-45
score: 153.4
IPR006554Helicase-like, DEXD box c2 typeSMARTSM00488deadxpdcoord: 8..280
e-value: 9.3E-117
score: 403.9
IPR010643Helical and beta-bridge domainPFAMPF06777HBBcoord: 270..413
e-value: 9.8E-42
score: 142.7
IPR013020DNA helicase (DNA repair), Rad3 typeTIGRFAMTIGR00604TIGR00604coord: 8..714
e-value: 1.3E-270
score: 897.9
IPR010614DEAD2PFAMPF06733DEAD_2coord: 72..256
e-value: 7.1E-50
score: 169.0
IPR014013Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-typePROSITEPS51193HELICASE_ATP_BIND_2coord: 7..285
score: 38.883
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 450..464
coord: 33..88
coord: 529..679
coord: 184..256

Blast
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BLAST of TCONS_00001605-protein vs. Swiss-Prot (Human)
Match: ERCC2 (TFIIH basal transcription factor complex helicase XPD subunit OS=Homo sapiens GN=ERCC2 PE=1 SV=1)

HSP 1 Score: 1174.07 bits (3036), Expect = 0.000e+0
Identity = 540/732 (73.77%), Postives = 637/732 (87.02%), Query Frame = 0 
Query:    1 MKLNIDGLLVLFPYDYIYPEQYSYMFELKKSLDAKGHCLLEMPSGTGKTVSLLSLIVAYLREKPQHLSKLIYCSRTVPELEKVLEELKKLMEYYEKETGEPLKMLGLALSSRKNLCIKPEVASLKEGKKVDGMCHALTASYVRAKHQNQPGIPVCSFFEDFDAKGREEPLPYGIYNLEDLKSYGQKMGWCPYFLARYAMSHANIVVYSYHYLLDPKIAELVSKDIPRSCAVVFDEAHNIDNVCIESMTCHITRRALDKCHNNIETLTENINRLKNQDADRLRTEYDRLVQGLQDARVARDTDVQLANPVLPDEVLEEAVPGNIRQAEHFVAFMRRFIEYLKTRLRVQHVVSETPPSFLQHINQQVCIDRKPLRFCAERLRSLLQTLEITDIADFGGLGLVAGFATLVSTYSKGFVIIIEPFDDQTPTIPNPILHFCCLDASVAIKPVFDRFQTVVITSGTLSPVDMYPKLLDFVPANIATFTMTLSRQCVMPMICSKGNDQVAISSKFETREDMAVIRNYGNLLVEMTASVPDGIVCFFVSYLYMESVVTVWHEQGVISNVQKNKLLFIETQDGTETALALYNYQKACENGRGAVLLSVARGKVSEGIDFDHHLGRAVIMFGIPYVYTQSRILKARLEYLRDQFNIRENDFLTFDAMRHAAQCVGRAIRGKTDYGIMVFADKRYSKADKKGKLPKWIQEHMKEANCNLTIDEAIQVSKRFLRQMAQPFSRDD 732
            MKLN+DGLLV FPYDYIYPEQ+SYM ELK++LDAKGH +LEMPSGTGKTVSLL+LI+AY R  P  ++KLIYCSRTVPE+EKV+EEL+KL+ +YEK+ GE L  LGLALSSRKNLCI PEV  L+ GK VDG CH+LTASYVRA++Q+   +P C F+E+FDA GRE PLP GIYNL+DLK+ G++ GWCPYFLARY++ HAN+VVYSYHYLLDPKIA+LVSK++ R   VVFDEAHNIDNVCI+SM+ ++TRR LD+C  N+ETL + + R+K  D  RLR EY RLV+GL++A  AR+TD  LANPVLPDEVL+EAVPG+IR AEHF+ F+RR +EY+K RLRVQHVV E+PP+FL  + Q+VCI RKPLRFCAERLRSLL TLEITD+ADF  L L+A FATLVSTY+KGF IIIEPFDD+TPTI NPILHF C+DAS+AIKPVF+RFQ+V+ITSGTLSP+D+YPK+LDF P  +ATFTMTL+R C+ PMI  +GNDQVAISSKFETRED+AVIRNYGNLL+EM+A VPDGIV FF SY YMES V  W+EQG++ N+Q+NKLLFIETQDG ET++AL  YQ+ACENGRGA+LLSVARGKVSEGIDF HH GRAVIMFG+PYVYTQSRILKARLEYLRDQF IRENDFLTFDAMRHAAQCVGRAIRGKTDYG+MVFADKR+++ DK+GKLP+WIQEH+ +AN NLT+DE +QV+K FLRQMAQPF R+D
Sbjct:    1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARGDKRGKLPRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 732
The following BLAST results are available for this feature:
BLAST of TCONS_00001605-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ERCC20.000e+073.77TFIIH basal transcription factor complex helicase ... [more]
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