TCONS_00002476 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002476
Unique NameTCONS_00002476
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2349

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002476 ID=TCONS_00002476|Name=TCONS_00002476|organism=Clytia hemisphaerica|type=transcript|length=2349bp
aaaaaatgacaagaaactacaattttttcctctttttaagcagttttaac
cgaatttaggggtggatcttcaaaagtcaaaagtttTGGAGATATATGTG
CAAAGAATTTTGGCTCGGGAATGATTTGATCCATGAGAAAACAACGTCCG
AAAATCACGATATTTTGATCCGAGCACGATTAACTACTGGACAAATTGTA
GTATCAAGGTATGAGAGATTCACAGTTGCTAACGAATCACAATCATATCA
AATGTATTTTGGTAAACTTATCAGTGGAATACACTCATTTGCAAACCTAA
CCCTACTGATAAGGAATCTAAATGGAAGTAGTTTCCATACCCCTGACAGA
GAAAGTAGAACAGGTTGTGCAGAGAGACATGGTTCTTTTTGGCATAACTC
ATGCGCTGATTTTCACCCCAATAAATATTGGAGACCACGTTGGAATGAGT
TTAGAATTGGACATCCGACGGGGGTGATAAAAGAAATTCAACTTTTAATT
AGGCCTTCCAGTATGCCTTGAGATAGGAGGGAGCAAttgacgtgtttttt
ataagaaccctGATCAGGCTTTCATATCGTGTCTTAATCCACGAATGGCA
TCTTATTTATTCATATCTATATTAACCCTTAAATGTAGTTTTTTTTGTGT
ACTTTATATTATGATTTTTGGTATTCTGGAAGAATGCATAACTGCTTTAA
CGGATTTATTTTGATGAATAtctgaaaaaacgacgatttgaCGATTGTTC
TTATCCGAACAACCATATTTTTTCTGAATCGCAATTTTCGATCACCTAAA
GGCGGTTTTAACTGTGTAAATATACAAGTTAAATCTCGATTTGAATCAAT
TAAATATTTAACTCAATAAAGTATGCCCAATTATTTTATCTCCCTAATAT
ATCTTTGTAGGGAAATGGTGTTATTGATCTTCACGCGTCAAAGAGTAGAC
CATTTCACCTTTAGGGTCTCGGATATTGTTGATCGTACATTTAATCGAGT
TAAAAACTTAGTATCCTCAATCATTTTATCTCCCTAATATTTCTGTGTAG
GGAAATGGTGTCATTGGTCTTCACGTGTCGAAGAGTACATCTACCCGATG
GATCACAATCCCGAATATTCCTCCATCTTGGTTCCCAATGTATTGAACGA
ACTTTTTAATCGATACCATTGCTAAACAGGGAAAGGCTGCTCTTTTGATT
GGTGAACAGGGGACAGCGAAGACaattatgatacaaagttacaTGAAACA
TTATGACCCTGAAGTTCATCTTACCAAAAGATTCAACTTCTCTTCTGCTT
CTACTCCAATGCATTTCCAGCGTACGATTGAAAGTTACGTGGACAAACGT
ATGGGAAGTACGTACGGTCCGGTGGCCGGTAAACAGATGTCCGTATTCAT
TGATGATATCAACATGCCGGTCATTAATGAGTGGGGTGATCAGGTGTCAT
TCGTTGTGGTCATTTTTGCAAAGAGCGTGGTTTCACGGACGAAGTTAGAA
CTCTGGCAAATGATTTGGTTGCTTGCACAAGAAGGTTGTGGCAATATACT
AAGGTCAAAATGTTGCCAACGCcggcaaaatttcattacgTCTTTAACTT
ACGTGATTTATCACGTATTTGGCAAGGGATGCTTAACGCTGTCAGTGACG
TCATCACAGAAACGTCCACGCTTTTGTCTCAATGGCAACACGAATGCACA
CGCGTTATTTGTGACCGCTTCGTGAATGAGATGGATAAGAGCTGGTTCAG
GAAAGTTGCTGTACAGATATGTGATGAGGAGATTGGGGCTAGTCATGATT
TGTCATGCTTGGAAGAGGAAGCTTACTTTGTTGATTTCTTGAGagATGCG
CCAGAGCCCACAGGAGATGAACCAGATGATGCTGATTTCGAAGCTCCCAA
GATTTATGAGCCCattgaaagTATGGACAGCTTACGCGAGAGATTGTCAC
ACTTCATGCATCAATATAATGAAAGCGTTCGTGGTTCTGGTCTTGATCTG
GTTTTCTTTGAAGATGCTATCACCAGCTTGCTGAAGATTTCTCGTATCCT
AGCAACGCCACGTGGCAATGCATTGTTGGTAGGCGTTGGAGGATCTGGTA
AACAGAGTTTGACAAGACTCGCTTCTTTTATTGCTGGTTATAAAACATTC
CAAATCACTATCACAAGGTCCGTGAGTTTCCGGAAGTCTTTACTTCCGAT
CTTTAAAATATTTCTGAGGAGCTTTTTTCTCGATTATCGGTGCACGGTGC
AGAGTTCTagatcactgacctttatatatccctgaaccaagctatatccg
ccatctttgatcgaaatttcttttgaattggtacctgtaaagaagccat
Run BLAST on NCBI

transcript from alignment at sc0000020:882986..896347+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002476 ID=TCONS_00002476|Name=TCONS_00002476|organism=Clytia hemisphaerica|type=transcript|length=13362bp|location=Sequence derived from alignment at sc0000020:882986..896347+ (Clytia hemisphaerica)
aaaaaatgacaagaaactacaattttttcctctttttaagcagttttaac
cgaatttaggggtggatcttcaaaagtcaaaagtttTGGAGATATATGTG
CAAAGAATTTTGGCTCGGGAATGATTTGATCCATGAGAAAACAACGTCCG
AAAATCACGATATTTTGATCCGAGCACGATTAACTACTGGACAAATTGTA
GTATCAAGGTATGAGAGATTCACAGTTGCTAACGAATCACAATCATATCA
AATGTATTTTGGTAAACTTATCAGTGGAATACACTCATTTGCAAACCTAA
CCCTACTGATAAGGAATCTAAATGGAAGTAGTTTCCATACCCCTGACAGA
GAAAGTAGAACAGGTTGTGCAGAGAGACATGGTTCTTTTTGGCATAACTC
ATGCGCTGATTTTCACCCCAATAAATATTGGAGACCACGTTGGAATGAGT
TTAGAATTGGACATCCGACGGGGGTGATAAAAGAAATTCAACTTTTAATT
AGGCCTTCCAGTATGCCTTGAGATAGGAGGGAGCAAttgacgtgtttttt
ataagaaccctGATCAGGCTTTCATATCGTGTCTTAATCCACGAATGGCA
TCTTATTTATTCATATCTATATTAACCCTTAAATGTAGTTTTTTTTGTGT
ACTTTATATTATGATTTTTGGTATTCTGGAAGAATGCATAACTGCTTTAA
CGGATTTATTTTGATGAATAtctgaaaaaacgacgatttgaCGATTGTTC
TTATCCGAACAACCATATTTTTTCTGAATCGCAATTTTCGATCACCTAAA
GGCGGTTTTAACTGTGTAAATATACAAGTTAAATCTCGATTTGAATCAAT
TAAATATTTAACTCAATAAAGTATGCCCAATTATTTTATCTCCCTAATAT
ATCTTTGTAGGGAAATGGTGTTATTGATCTTCACGCGTCAAAGAGTAGAC
CATTTCACCTTTAGGGTCTCGGATATTGTTGATCGTACATTTAATCGAGT
TAAAAACTTAGTATCCTCAATCATTTTATCTCCCTAATATTTCTGTGTAG
GGAAATGGTGTCATTGGTCTTCACGTGTCGAAGAGTACATCTACCCGATG
GATCACAATCCCGAATATTCCTCCATCTTGGTTCCCAATGTATTGAACGA
ACTTTTTAATCGATACCATTGCTAAACAGGGAAAGGTATGTACTTTCAAC
GCTCATAActcgtccatataacgttgcatgttttttttaataagcaagtg
tctgtccctattCCAGGCTCGCATCATGCTCAGCATTCTATTTtcctcaa
acaatagagccctTGTTTAGGTATCAAAAACTGaacctgcatatgcttat
agaacgttatgcttataaaagaaagacatgTAGATGAACTTTGAAACAGC
TCTGGAACTCCCTTGAGTAGTCTCTGGTTTATAATTTCTCGAGATTCTAA
GAAAATGTAGTTTCGGTTCGGAATAGTATGAAAGAATCCTATCTGTCGca
gttaaattttaaaatattctgtTTGGTAACAAAGCTGATAGGGTTTTGTA
TTTGACATATGATAAAGAATATGAGAATATCTGAGAGAATATTTTCACCA
CCGAAATCAAGATTTCTTCACTTTCTCTCTTGTACGTCAGGCAGCTCTTT
GATCGTAACTATAGTATTAAAATTCTAATCAGTCTACTATATAACTATTA
TCCACAGCCAACTGATAATTTAGACCAATAAAGAATAAAAGCAAGTCCGA
GAAAATTTATCAAGTCaagatattcaaaacaaaagaataaaatttcttGT
CTTGATGAATGTTCTCGGACTTTTATGTATTAGTTATCGgacaaatgtct
gataactggtttatcggtgacccaaaaatgCACATTatgcacttttgtag
caaagtgacgttatattgctgctaccgctacaatgcagtaacatcttttc
gtcaatttatatatatttttacacaataaattgaagttgagataagaatt
gtttgatacttaaagtttcacgcaacttttcgtcacgatcttcagtcaaa
aattctatACAAAAAATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNCTTTGGATTGGTTGGCTTATACGAAAGTTCGACGTTGTAGC
CGCTTTCTTTCAACGCTTTCTCGTACGGTTTTTTGGCTTCGGTGAAGATA
TGTTCGTTGGATGAGTGATTTGACAGTCGTTGTTCGATCGTTTTGGGTAT
TTGCCTGATCACGTTTGGAGGGTGGTTTGATTGAGTATTTATATATTGAA
GTTTGTTGTCTGGTTTCAGGTAAGGCTTGAATGAACCATCTTCAAGGTTA
AGAGTAATATCTAAATAATTGACGATTGTCTTATTGCACTCAATAACGAT
CTCTAAACCATCCCCGTACTCTCGGAATTTCGACTGCAAGTCCTTTTTGA
CTCGTTCCAACTTGCTCCCCGTCTTGCATTTTACAACTGAAAGTCCGTCA
TCACGATAAAGACCAAAGTTCTTTATGTCGTACGTTTCGCTTAACTTATG
CTGAAGGTAAATGCCGACGAGCTCGCACACTTCCGCACCGTCGAACGCGC
CCATTGTGACATCGAACAGACTACCTTTCTTTTTCATCCAGGCGGAACCG
TCGCTAAAGCATAAAGATTTTCGAGCATGCTGAATTATTTTTACGTCTTC
AGTTGAGATGCGTGTGATTGGTTTAGCGAATTTGATAGCGTCGGATAGTA
GCTTTTTAGTTATTGAGGGATAGAAGTCCTTGATGTCAAAAACTACGAAC
CTGTGCTGCTTTTTGTTCGGTATGGCTTTGAACCATTCGATAACTTCACT
GGTGTTCTTCCATTGGTTGATTTCCAGGTGGGCTTTGAGATCGTTGTTCA
CTCTGTCAAGGATCGATTTTGCGATACGGCCGATCTCGTTTTTGGCAGGA
TTCAGTAAACGCACCTTTGGATTGTTTTGGAAGTTCTCCTTATGGTCTTT
TAGGGTTATGAAAGCCTCATCTTCGCCGTTTGTCAGCATTCTGCCGAAGA
CTTTCATGTCTTTAACGATTGATTTTCCGGCTGAATTGATTTTATGATGG
ATGTTTTTGTTGACCTTTTTGTATGTCGATGTGACGGCGTTTGTCAACAG
CTTGTCGTGTTCTTCTTTGGAAAGCTTATAGAGATTTGTCGTTTTATCAG
CAAACGTTAGCGTTGTTTTCGTGTTTTTGATCGTTTTGATGTCGTTTCTC
AGAGTTTTTTGAAACTTGTTCTGGTTTCCCCTGAATTTGATAGATTTCAC
CATATCAAATAGGTCGTTTTCGAATGGGACCATTTCTTTTATCAAGGTTG
GACAATTCAACGTTTTCATGCCGTACGTCTCTGGTCTTGGTTCATCGTTT
GGTTGTTCGAGGAAATGTGCTCGCCATCTCATTCTTTTGATCACCATTTC
GACTTTATCGATCAACTGGAGACGATAACTGTGCTGGGATGGTGTTGGTA
TATTCTTGTAGGAGTAATCGAATTGTAGTTTCTCCATAACTTCGTATGTT
GAATTTGATAGAGTGCTCAACTTTCGGAGCGTTCATATATTtttacaaga
tatattgtacttttttaaccaatcagattgcagatactttttggatcgcc
gataatcTTTTATATAATTATTAGACACATGAaggttttcatgttttttt
tgttaagTTGCGTAATCTCCTTAGACtttgttatagtctaagacgaatca
ctatctaagaaaaaagcccaaagccgaagaaaatttacaaacgggttttt
ttgtcGAAAAAAGTTTACAGCCGGTATAGTTTGCCAgtcttcttcgaaac
tctcccgccgatttttccCCGTataccgcctttactatcactgtaacgga
cgataaagCGTCTAAACCTCCTCTATATTTTCAGGCTGCTCTTTTGATTG
GTGAACAGGGGACAGCGAAGACaattatgatacaaagttacaTGAAACAT
TATGACCCTGAAGTTCATCTTACCAAAAGATTCAACTTCTCTTCTGCTTC
TACTCCAATGCATTTCCAGGTATGAaaaccttatcggggaaaaaatatTG
TAGTTTTAATTagtcgggggaaaatttcgtcagggaaaaatttcgtcacc
tagaggcattttcgtcacttttccccgaccaaatttacaattCAGTCAGT
TCCACCCGACTAAATTGTTCAAATTAAATCGtctccttcactagctcgaa
aaagatcttgtaattcgacgtttaaagcactagtTTCTGTAATTCAGGGT
gtaaaaatttggatttgatATTTGGTTGGAGTgtgaaattttgagtaaaa
ttttcGCTCGGGAACAAAAAAAtggggtaaaagttttggtcgggtgataa
aatgtcggggagttatttcgtcaccccctcaaaattttcgtcactttccc
ccgacatttttttccccgataaggtagtttcTCTTTCAATTGTCAAGTAC
CGGGGTGTGCAACAAATaggtttctctctttgaaactaactttCTCGAAA
TCGAAATATTTTAATAGAACCATTCcttttccattggaaagaagaaagat
aaacttaaattttgattggtcTTTCGTTAAATTTGATCAACTAGATTTAA
AATTATGcccaattgaataaaaaaagttactttcggagAGTACTCGAATA
tgttgaaaatgaaagaaaaattttgtggcgcacccggtatattatCGACA
GCCGAGGTTTGTCTGtgtttttctaaagatttttcTCCGCTTTTTGCGTT
TTTATTACTATATATGGTGGCGTGTCTAATTAACGTTCTTTTCTCCGTCA
TTTTTTTACGTTTTAGCGTACGATTGAAAGTTACGTGGACAAACGTATGG
GAAGTACGTACGGTCCGGTGGCCGGTAAACAGATGTCCGTATTCATTGAT
GATATCAACATGCCGGTCATTAATGAGTGGGGTGATCAGGTGAGGTTGTT
TCATTGTTATTGTTTTATGCAGATCTTTACACAGAAGAACATCTATTTag
cggacactctaaaaggcgggcCTGTCTCCACGATGGTGGAGATACTCCAC
TGTGATAATATCCGTACGTGTCTAGAGCCTTTCTCTGCAGCGTTTTGCAT
TTCGCTAGCGGATTAAGCTTGCCGTATATTTCTTTCCAGTGGTTATGCTT
ATTTTTAACAGTTCATCATGAAAATTCTCATAAAAAGCATGTACTAAAGG
ATATTctcagggctcgaaataacgatatttaggtggtcggacacattgtc
cgatcaaaaattgatttgggtcggacatgtcctaagGCTTTTAANTAATA
CaagcttctgatagaatttCACATTGATCAcaaagaagctaaacaaatgc
caattaatggtcagaagcccatgatttttacttgaagcatgcttttgtgt
aaataaagaagttactaattctatgtaaattgtaatttcttttggaaatt
tcacaacgcctctgacaaattttttgaaggcaCTGAAAGTAATTaggtcg
gacatgatgtccgactagaatcgatttgggtcggacatttcagcaattgg
gtcggacaatgtccgatgtccgaccgttatttcgagccctgtatTCTACA
TAAGTATTCTTGTGTTTCAGTGTCATATCAGGCACATGTTTTACATCAGa
cccctattgttatattgtgttcgattttgtgctgaataaacaaaaaatag
tttttctttcctttttgaaCCTTtattgctccacatccatgtcaattcaa
tgtggaaaagcttgttggacctaccccggtggaggtcctataaattaacc
tttgtccgtccgtccgttagttaccagcttttctcgagattggctcatta
gttttttctgattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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Naatttttcagctcaaaaaaagcatctttatcaataagaatcactattaa
taaacatacatcaatgttcttagccaaattactcaattttttggagatgt
ttttgtttttggttcgaaaggtttttttataagaaacaaacgactaattt
taatagatcgtcactatttgtgttctgaatgattgtttaatggtcacgtc
acgtagacatgggatcatcccccccaggaagatggggggggaattagatt
ttggtgccaggggggaagtgaaaatttcaagcttgatggggggagaaagg
cgaatagggggtatattcagtcctctacctagtggggggagtaataggat
aaatacagaccttcctggtgtgtttgagcattcaggcttatgagcctgtc
tttcCTTTCTTgggattttgagagtcttttttttgctatagcttgcgaat
tgaggcgagtctggatcatcacttcgcaacccttatacgatacggctagg
gggatttcccaattggggggagcacgaattttaaagacaggtggggggga
aaggccagatgggggattttagctcatattaggggggaccaaaaagctgg
aggacgccatggtagatatcaattataaacgtgttaaatgcataatccag
gtaggtccatcaaagtatcacttgttgatTTAAAATTAATGAGTAAGCAT
CAACTTAgtttaaaacaaaacctttaattataGATAACAAACGAAATCGT
GCGTCAACTAATGAGCGATGGTGGTTTTTACAACCTTGATAAACCTGGTG
ACTTCACCACAATTGTTGATATTCAATTCCTTGCCGCCATGATCCACCCG
GGCGGTGGGCGTAAAGATATTCCAGAACGCTTAAAAAGACAGTTCTCTAT
TTTCAATTGCACTCTGCCCTCTAACAATTCAATCGACAAGATCTTTGGTA
CCTACCTTTAAATGCGCGGTCGGTTTCTAAGGGGACTGGTGATGAATTAA
TAATACGTTGGGTTTAAGattagtgagtttatgtattcgagataaatcga
gggggtggtataaagcaaagttgacatgtctccaaaatcactgtccactt
tgctcgacgacggtaaaaacaccaaaataccgtcgtctgtttaggggagc
aaaggcgatataaaGCCGTACATCagctatcgactttgttttgtatcatt
tcacttaccgtcgccctcgatatcctccgatacataaactcggtagtatt
aatgcaacgacttcagatGTCTTGGCGTCATTCCTTGCTAGTAAACTCGG
ACCCAGTCTTTGCACGCTTTAAAGGTTGATAGGTATATTAAACAAGAAGC
CTCTCAGTTAGTTTTGTAAATTTCAAATCTCTAATACCCTCTAATTTTGC
TATCCTCACAGGTTTTCAAATTACTTGTAAAACATCTGCTTATTCTTCAT
TCCAAACTAGATCCTCGTAGGGAAAATaatttccaatgcaatatcattcT
ACTTAAGAAGTCATATTGCTTCCTGTCctctaccttaagtggataaattt
tggcgtggatttaatttggcgatttgCCAAAACACGAtctttggcgggaa
tttaatttggcgatagatcaatttcgtaaaatttggcggggatttaattt
ggcgaattggaaattttgtcacactgaaatgggtgaaaattactcaaaaa
tatactaaaaagttgtgatttttcacataattctctttttgttaaatttc
gcggggatttaatttggcgaattggaaattttgtcacactgaaatgggtg
aaaattactcaaaaatatactaaaaagttgtgatttttcacataattctc
tttttgttaaatttcgcggggatttaatttggcgaattgccgaatttgga
agttttggcgaggatttaatccccgccaaaatttatccacttaatgTAAT
CCATCTTTGAAACAAAAGTGAGCTGCCCTTTTGAGGACGGTTCGaaacga
tttggaataacccgtaGTTACACGTACTGTTCTATcacattttaataatt
tttgtaataattttttcatttaccaGGTGTCATTCGTTGTGGTCATTTTT
GCAAAGAGCGTGGTTTCACGGACGAAGTTAGAACTCTGGCAAATGATTTG
GTTGCTTGCACAAGAAGGTTGTGGCAATATACTAAGGTTTGTTTGGTTCT
ACTTTATAATGCCTGTCTTCAAAGAGACTGACGTATTTTCAAACCTAACT
TTCGACAAACGCTACAAATTTTAACTGAtcataaaacaaataaaacacaA
TTGGTTGGTTTTCCTCGTGTAGTGCTCAATCGTGATCCTTGTAAAACGAA
AAATAATGTCTTGATCAATTACCCTTTAAAATATCGACCCGATGactgaa
tttttaataaatcttttttccTTGTATAATTTTGATCTCCAGTTGACGCT
CtccaattcgattttcaaagggaATTGAATTTTTGGAGTGAAtagaatag
tagagcgtcgtttatgagagttttttgttgacAGTAACTTTCAATatcaa
ataagggagcctatcaaatagtagaacgtcgattAAGAAAGCTTCAACCG
TCAACTGAGTTTTTTTACTTACCGTAAGTCAACTCTAGGTCCAATGGTTG
ATTCCACAATTGCGGAACTTAACAAAACATGAGAAACTTCTATAGCTTGC
CCTACAGAATCTATCCGTTTTTATGGTTTTGTGGTTTTGTGATAATAATC
TCTTCCCGCATTATTTTCCGTCTTTCTTTAGGTCAAAATGTTGCCAACGC
cggcaaaatttcattacgTCTTTAACTTACGTGATTTATCACGTATTTGG
CAAGGGATGCTTAACGCTGTCAGTGACGTCATCACAGAAACGTCCACGCT
TTTGTCTCAATGGCAACACGAATGCACACGCGTTATTTGTGACCGCTTCG
TGAATGAGATGGATAAGAGCTGGTTCAGGAAAGTTGCTGTACAGATATGT
GATGAGGAGATTGGGGCTAGTCATGATTTGTCATGCTTGGAAGAGGAAGC
TTACTTTGTTGATTTCTTGAGGTGAGTTAAGATCTGGACATTTCGTGCTA
TGGAAATAAACCCTCCTTATTTCATCTAGCGGAGTGTTTGTGATTGTAAA
TAGCTAAAAATCTCCCATTAAAGCTTAAAACAACTTTAAAGCTTGACAAA
GTCTATCAAGGATAGTTACCAATAGGAAAGTTAACGTTAAATTTGAAAAG
ATTCTCCTAATACATCTGATATCAGATTTCCATGATGGTAACCCCTCAAA
GCATCCAATCTGATGTCTGACTTTCCATAGCCTTCTGATGGCTATATTGT
CTTAGTTGGTTTGTTGGCAATACAGTGAGAAAGAGTtgtgccctccccta
cctttgggtagatagctatcgaaaaaaGAGCCTTCTGGATTGCTCTTCCA
CTCTTAAAAGCTTTTATCTTTCATTTCAAtcttatgtttcatttttcaga
gATGCGCCAGAGCCCACAGGAGATGAACCAGATGATGCTGATTTCGAAGC
TCCCAAGATTTATGAGCCCGTTACTATCTTGGAACCATTTTCGAAACATA
TGACTCGAAGTATTATAGACGAAATCAATTTACCGGGTGATTGATAAAAA
TCTCGGTTACTGATCCCTTTAGATGAACCAAAGCCTAAGTCTAATGCATT
CACAGTTTTGTAAACATtccctttttcttttattgataaaaatctcGGTT
ACTGACTCCTTAAGACCAACCAAAGTCTAGTCTAGTCTAATGCATTCACG
GTTTCATAAACATctccttttctcttttttttttaaagattgaaagTATG
GACAGCTTACGCGAGAGATTGTCACACTTCATGCATCAATATAATGAAAG
CGTTCGTGGTTCTGGTCTTGATCTGGTTTTCTTTGAAGATGCTATCACCA
GCTTGCTGAAGGTAAAGTTTGtcaagaaaattttaagtttaagcAACTTT
AGGTTTCTGCTACCCAATATCAAAAGTGGAACACAACCCTAGCATGCGTT
TAAAGaaactatttttttgttttgaaatagataaaaactttcaagaaaat
gcatagtaagggtcgattttgcgcctaaatttggctaaattttctcttCA
CTGTAATGTTCTAATTTTGAGACCCTAATTTTTTCCCGCCCAtacggtcg
ttttcagatcggtTTTGGCCAGTAGTGTCAAATTTAAAATAGACataagt
tgtataaaattttccGCTACtagcaaaaaccggggtctttccgtagaaaa
tattacgtcatgaatatcatgaatcttattttcttttttctttctacaGA
TTTCTCGTATCCTAGCAACGCCACGTGGCAATGCATTGTTGGTAGGCGTT
GGAGGATCTGGTAAACAGAGTTTGACAAGACTCGCTTCTTTTATTGCTGG
TTATAAAACATTCCAAATCACTATCACAAGGTCCGTGAGTTTCCGGAAGT
CTTTACTTCCGATCTTTAAAATATTTCTGAGGAGCTTTTTTCTCGATTAT
CGGTGCACGGTGCAGAGTTCTagatcactgacctttatatatccctgaac
caagctatatccgccatctttgatcgaaatttcttttgaattggtacctg
taaagaagccat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001322XLOC_001322Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002476-exon-sc0000020-1491911889:882986..884170TCONS_00002476-exon-sc0000020-1491911889:882986..884170Clytia hemisphaericaexon
TCONS_00002476-exon-sc0000020-1510915933:882986..884170TCONS_00002476-exon-sc0000020-1510915933:882986..884170Clytia hemisphaericaexon
TCONS_00002476-exon-sc0000020-1575043694:882986..884170TCONS_00002476-exon-sc0000020-1575043694:882986..884170Clytia hemisphaericaexon
TCONS_00002476-exon-sc0000020-1491911889:887720..887854TCONS_00002476-exon-sc0000020-1491911889:887720..887854Clytia hemisphaericaexon
TCONS_00002476-exon-sc0000020-1510915933:887720..887854TCONS_00002476-exon-sc0000020-1510915933:887720..887854Clytia hemisphaericaexon
TCONS_00002476-exon-sc0000020-1575043694:887720..887854TCONS_00002476-exon-sc0000020-1575043694:887720..887854Clytia hemisphaericaexon
TCONS_00002476-exon-sc0000020-1491911889:888652..888774TCONS_00002476-exon-sc0000020-1491911889:888652..888774Clytia hemisphaericaexon
TCONS_00002476-exon-sc0000020-1510915933:888652..888774TCONS_00002476-exon-sc0000020-1510915933:888652..888774Clytia hemisphaericaexon
TCONS_00002476-exon-sc0000020-1575043694:888652..888774TCONS_00002476-exon-sc0000020-1575043694:888652..888774Clytia hemisphaericaexon
TCONS_00002476-exon-sc0000020-1491911889:893762..893871TCONS_00002476-exon-sc0000020-1491911889:893762..893871Clytia hemisphaericaexon
TCONS_00002476-exon-sc0000020-1510915933:893762..893871TCONS_00002476-exon-sc0000020-1510915933:893762..893871Clytia hemisphaericaexon
TCONS_00002476-exon-sc0000020-1575043694:893762..893871TCONS_00002476-exon-sc0000020-1575043694:893762..893871Clytia hemisphaericaexon
TCONS_00002476-exon-sc0000020-1491911889:894467..894756TCONS_00002476-exon-sc0000020-1491911889:894467..894756Clytia hemisphaericaexon
TCONS_00002476-exon-sc0000020-1510915933:894467..894756TCONS_00002476-exon-sc0000020-1510915933:894467..894756Clytia hemisphaericaexon
TCONS_00002476-exon-sc0000020-1575043694:894467..894756TCONS_00002476-exon-sc0000020-1575043694:894467..894756Clytia hemisphaericaexon
TCONS_00002476-exon-sc0000020-1491911889:895185..895254TCONS_00002476-exon-sc0000020-1491911889:895185..895254Clytia hemisphaericaexon
TCONS_00002476-exon-sc0000020-1510915933:895185..895254TCONS_00002476-exon-sc0000020-1510915933:895185..895254Clytia hemisphaericaexon
TCONS_00002476-exon-sc0000020-1575043694:895185..895254TCONS_00002476-exon-sc0000020-1575043694:895185..895254Clytia hemisphaericaexon
TCONS_00002476-exon-sc0000020-1491911889:895524..895646TCONS_00002476-exon-sc0000020-1491911889:895524..895646Clytia hemisphaericaexon
TCONS_00002476-exon-sc0000020-1510915933:895524..895646TCONS_00002476-exon-sc0000020-1510915933:895524..895646Clytia hemisphaericaexon
TCONS_00002476-exon-sc0000020-1575043694:895524..895646TCONS_00002476-exon-sc0000020-1575043694:895524..895646Clytia hemisphaericaexon
TCONS_00002476-exon-sc0000020-1491911889:896035..896347TCONS_00002476-exon-sc0000020-1491911889:896035..896347Clytia hemisphaericaexon
TCONS_00002476-exon-sc0000020-1510915933:896035..896347TCONS_00002476-exon-sc0000020-1510915933:896035..896347Clytia hemisphaericaexon
TCONS_00002476-exon-sc0000020-1575043694:896035..896347TCONS_00002476-exon-sc0000020-1575043694:896035..896347Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:882986..896347 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0865227	0.134234	0.244274	0.39727	0.259018	0.205053	0.104596	0.0231809	0.014469	0.135724	1.54398e-08	0.0540038	0.0577227	0	0.0177414	0	0	0	0	0	0.0416339	0.0574558	0.0496208	0.0419371	0	0	0.0593405	0	0	0
Blast
[Close]
BLAST of TCONS_00002476 vs. Swiss-Prot (Human)
Match: DYH5 (Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3)

HSP 1 Score: 337.421 bits (864), Expect = 9.399e-98
Identity = 166/293 (56.66%), Postives = 206/293 (70.31%), Query Frame = 3 
Query: 1443 GVIRCGHFCKERGFTDEVRTLANDLVACTRRLWQYTKVKMLPTPAKFHYVFNLRDLSRIWQGMLNAVSDVITETSTLLSQWQHECTRVICDRFVNEMDKSWFRKVAVQICDEEIGASHDL--SCLEEEAYFVDFLRDAPEPTGDEPDDADFEAPKIYEPIESMDSLRERLSHFMHQYNESVRGSGLDLVFFEDAITSLLKISRILATPRGNALLVGVGGSGKQSLTRLASFIAGYKTFQITITRSVSFRKSLLPIFKIFLRSFFLDYRCTVQSSRSLTFIYP*TKLYPPSLIE 2315
            GVI  GH+C +RGF++EVR     LV  TRRLWQ TK+KMLPTPAKFHYVFNLRDLSR+WQGMLN  S+VI E + LL  W+HEC RVI DRF    D +WF K  V + +EE G    L   C   + YFVDFLRDAPE  G+  ++AD E PKIYEPIES   L+ERL+ F+  YNES+RG+G+D+VFF DA+  L+KISR++ TP+GNALLVGVGGSGKQSLTRLASFIAGY +FQIT+TRS +   +L+   K+        YR   Q  + +TFI+   ++   S +E
Sbjct: 2742 GVIGVGHYCTQRGFSEEVRDSVTKLVPLTRRLWQMTKIKMLPTPAKFHYVFNLRDLSRVWQGMLNTTSEVIKEPNDLLKLWKHECKRVIADRFTVSSDVTWFDKALVSLVEEEFGEEKKLLVDC-GIDTYFVDFLRDAPEAAGETSEEADAETPKIYEPIESFSHLKERLNMFLQLYNESIRGAGMDMVFFADAMVHLVKISRVIRTPQGNALLVGVGGSGKQSLTRLASFIAGYVSFQITLTRSYN-TSNLMEDLKVL-------YRTAGQQGKGITFIFTDNEIKDESFLE 3025

HSP 2 Score: 173.711 bits (439), Expect = 1.349e-53
Identity = 77/105 (73.33%), Postives = 92/105 (87.62%), Query Frame = 1 
Query: 1147 TNFLIDTIAKQGKAALLIGEQGTAKTIMIQSYMKHYDPEVHLTKRFNFSSASTPMHFQRTIESYVDKRMGSTYGPVAGKQMSVFIDDINMPVINEWGDQVSFVVV 1461
            T+FLI TIAKQGKA LLIGEQGTAKT++I+ +M  YDPE H+ K  NFSSA+TP+ FQRTIESYVDKRMG+TYGP AGK+M+VFIDD+NMP+INEWGDQV+  +V
Sbjct: 2572 TDFLIQTIAKQGKAVLLIGEQGTAKTVIIKGFMSKYDPECHMIKSLNFSSATTPLMFQRTIESYVDKRMGTTYGPPAGKKMTVFIDDVNMPIINEWGDQVTNEIV 2676

HSP 3 Score: 56.225 bits (134), Expect = 1.349e-53
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 3 
Query: 1050 GKWCHWSSRVEEYIYPMDHNPEYSSILVPNVLN 1148
            G W HW++R +EY+YP D  PEY SILVPNV N
Sbjct: 2537 GTWTHWNTRTQEYLYPSDTTPEYGSILVPNVDN 2569
The following BLAST results are available for this feature:
BLAST of TCONS_00002476 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DYH59.399e-9856.66Dynein heavy chain 5, axonemal OS=Homo sapiens GN=... [more]
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