TCONS_00000768-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000768-protein
Unique NameTCONS_00000768-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length286

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000768-protein ID=TCONS_00000768-protein|Name=TCONS_00000768-protein|organism=Clytia hemisphaerica|type=polypeptide|length=286bp
MIFKHSSLSTKLFLRDVGVTLPEEITKLHFLRQGAILAAAGSNIYILKPY
KHHVLAVYSEHNADIHTLVSLGDHVVSIDEDNVLNVWSSARADNRETYLN
FALDKDVFSITCCIHPSTYLNKILLGSKQGKLQLWNIRTNKMIHEFKGWE
EPVVVMEQSPAIDVIGIGLQSGHVILYNIKFEKKLMSFHQDFGNITSIAF
RTDGQPVMATGSTIGHVTFWDLEKKRLITVLRHAHVNSVSGMKFLQRQPT
MITSSPDNSLKMWIFDNPDGSARLLRXYFTSSEIFP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000474XLOC_000474Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000768TCONS_00000768Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR0110426-blade_b-propeller_TolB-like
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 51..88
e-value: 5.0
score: 12.6
coord: 139..178
e-value: 57.0
score: 5.9
coord: 224..264
e-value: 0.23
score: 20.5
coord: 94..136
e-value: 470.0
score: 0.2
coord: 181..221
e-value: 0.21
score: 20.7
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 232..263
score: 9.64
NoneNo IPR availableGENE3D1.10.10.670coord: 135..189
e-value: 2.6E-7
score: 30.0
NoneNo IPR availableGENE3D2.80.10.50coord: 190..220
e-value: 8.4E-4
score: 18.9
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 6..134
e-value: 4.8E-13
score: 48.3
IPR011042Six-bladed beta-propeller, TolB-likeGENE3D2.120.10.30coord: 221..274
e-value: 2.0E-7
score: 30.0
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 58..273
score: 19.433
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 22..268

Blast
[Close]
BLAST of TCONS_00000768-protein vs. Swiss-Prot (Human)
Match: WDR36 (WD repeat-containing protein 36 OS=Homo sapiens GN=WDR36 PE=1 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 9.914e-85
Identity = 125/266 (46.99%), Postives = 179/266 (67.29%), Query Frame = 0 
Query:   11 KLFLRDVGVTLPEEITKLHFLRQGAILAAAGSNIYILKPYKHHVLAVYSEHNADIHTLVSLGDHVVSIDEDNVLNVWSSARADNRETYLNFALDKDVFSITCCIHPSTYLNKILLGSKQGKLQLWNIRTNKMIHEFKGWEEPVVVMEQSPAIDVIGIGLQSGHVILYNIKFEKKLMSFHQDFGNITSIAFRTDGQPVMATGSTIGHVTFWDLEKKRLITVLRHAHVNSVSGMKFLQRQPTMITSSPDNSLKMWIFDNPDGSARLLR 276
            KL L  V  ++P++I  +     G ++ AA  N++        ++  +  H A+IH L   GDH++S+D D +L +W      + E YL    DK VF I+  +HPSTYLNKILLGS+QG LQLWN+++NK+++ F GW+  V  ++Q+PA+DV+ IGL SG VI++NIKF + LM F QD+G ITSI+FRTDG PVMA GS  GH+  WDLE K+LI  +R+AH  +++G+ FL R+P ++T+  DN+L++WIFD P G  RLLR
Sbjct:  113 KLSLVAVSNSVPQDICCMA--ADGRLVFAAYGNVFSAFARNKEIVHTFKGHKAEIHFLQPFGDHIISVDTDGILIIW---HIYSEEEYLQLTFDKSVFKISAILHPSTYLNKILLGSEQGSLQLWNVKSNKLLYTFPGWKVGVTALQQAPAVDVVAIGLMSGQVIIHNIKFNETLMKFRQDWGPITSISFRTDGHPVMAAGSPCGHIGLWDLEDKKLINQMRNAHSTAIAGLTFLHREPLLVTNGADNALRIWIFDGPTGEGRLLR 373
The following BLAST results are available for this feature:
BLAST of TCONS_00000768-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR369.914e-8546.99WD repeat-containing protein 36 OS=Homo sapiens GN... [more]
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