TCONS_00000577-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000577-protein
Unique NameTCONS_00000577-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length456

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000577-protein ID=TCONS_00000577-protein|Name=TCONS_00000577-protein|organism=Clytia hemisphaerica|type=polypeptide|length=456bp
MRECISIHIGQAGCQIGNACWELYCMEHNIKPDGLMNEEGSQRDDESFST
FFNETGNGKHVPRALFLDLEPNVIDEIRTGAYSKLYHPEQLISGSEDAAN
NYARGHYTVGKQMIDDVLDKVRRLTENCTGLQGFLMFHSFGGGTGSGFTS
LLMERITADYSRKSKLEFAIYPAPRVSTAVVEPYNACLTTHTTLDNSDCA
FMVDNEAIYDICRRNLDIDRPSYTNLNRLIGQIVSSITASLRFDGSLNVD
LNEFQTNLVPYPRIHFPVATIAPVLSAAKAYHEKISVSEITHQCFEPANQ
MVKCDPRLGKYMAVCLLYRGDVVPKDVNTAIAHLKTKKNIQFVDWCPTGF
KVGINYQPPTTVPGGDLAKVPRSVCMLSNTTAVAEAWARLDHKFDLMYAK
RAFIHWYVGEGMEEGEFAEARENMASLERDYEEVASDSVADDYDEDEEGE
GSGEEY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000341XLOC_000341Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000577TCONS_00000577Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002452Alpha_tubulin
IPR000217Tubulin
IPR003008Tubulin_FtsZ_GTPase
IPR018316Tubulin/FtsZ_2-layer-sand-dom
IPR017975Tubulin_CS
IPR008280Tub_FtsZ_C
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0005200structural constituent of cytoskeleton
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005874microtubule
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0005874 microtubule
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0005200 structural constituent of cytoskeleton
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 417..437
NoneNo IPR availableGENE3D1.10.287.600coord: 383..454
e-value: 1.3E-29
score: 101.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 428..456
NoneNo IPR availableCDDcd02186alpha_tubulincoord: 2..434
e-value: 0.0
score: 833.725
IPR002452Alpha tubulinPRINTSPR01162ALPHATUBULINcoord: 44..57
score: 59.48
coord: 119..127
score: 43.42
coord: 147..159
score: 60.89
coord: 384..400
score: 83.89
coord: 160..171
score: 66.53
coord: 346..359
score: 93.16
coord: 213..225
score: 78.73
coord: 273..288
score: 65.13
coord: 87..100
score: 86.97
coord: 18..33
score: 77.78
coord: 359..378
score: 77.86
coord: 320..341
score: 71.47
coord: 421..437
score: 62.48
IPR000217TubulinPRINTSPR01161TUBULINcoord: 133..151
score: 68.74
coord: 379..407
score: 53.56
coord: 52..71
score: 63.16
coord: 94..105
score: 62.68
coord: 152..173
score: 37.12
coord: 177..190
score: 67.87
coord: 107..131
score: 50.6
coord: 10..30
score: 62.18
coord: 191..211
score: 55.99
IPR003008Tubulin/FtsZ, GTPase domainSMARTSM00864Tubulin_4coord: 48..245
e-value: 5.7E-70
score: 248.4
IPR003008Tubulin/FtsZ, GTPase domainGENE3D3.40.50.1440coord: 1..263
e-value: 7.9E-123
score: 408.5
IPR003008Tubulin/FtsZ, GTPase domainPFAMPF00091Tubulincoord: 3..212
e-value: 3.4E-64
score: 216.6
IPR003008Tubulin/FtsZ, GTPase domainSUPERFAMILY52490Tubulin nucleotide-binding domain-likecoord: 1..243
IPR018316Tubulin/FtsZ, 2-layer sandwich domainSMARTSM00865Tubulin_C_4coord: 247..392
e-value: 4.3E-51
score: 185.7
IPR018316Tubulin/FtsZ, 2-layer sandwich domainGENE3D3.30.1330.20coord: 264..382
e-value: 3.1E-55
score: 184.9
IPR018316Tubulin/FtsZ, 2-layer sandwich domainPFAMPF03953Tubulin_Ccoord: 262..390
e-value: 4.8E-48
score: 162.4
IPR017975Tubulin, conserved sitePROSITEPS00227TUBULINcoord: 141..147
IPR008280Tubulin/FtsZ, C-terminalSUPERFAMILY55307Tubulin C-terminal domain-likecoord: 245..437

Blast
[Close]
BLAST of TCONS_00000577-protein vs. Swiss-Prot (Human)
Match: TBA1C (Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1)

HSP 1 Score: 753.821 bits (1945), Expect = 0.000e+0
Identity = 362/457 (79.21%), Postives = 413/457 (90.37%), Query Frame = 0 
Query:    1 MRECISIHIGQAGCQIGNACWELYCMEHNIKPDGLM-NEEGSQRDDESFSTFFNETGNGKHVPRALFLDLEPNVIDEIRTGAYSKLYHPEQLISGSEDAANNYARGHYTVGKQMIDDVLDKVRRLTENCTGLQGFLMFHSFGGGTGSGFTSLLMERITADYSRKSKLEFAIYPAPRVSTAVVEPYNACLTTHTTLDNSDCAFMVDNEAIYDICRRNLDIDRPSYTNLNRLIGQIVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPVATIAPVLSAAKAYHEKISVSEITHQCFEPANQMVKCDPRLGKYMAVCLLYRGDVVPKDVNTAIAHLKTKKNIQFVDWCPTGFKVGINYQPPTTVPGGDLAKVPRSVCMLSNTTAVAEAWARLDHKFDLMYAKRAFIHWYVGEGMEEGEFAEARENMASLERDYEEVASDSVADDYDEDEEGEGSGEEY 456
            MRECISIH+GQAG QIGNACWELYC+EH I+PDG M +++     D+SF+TFF+ETG GKHVPRA+F+DLEP VIDE+RTG Y +L+HPEQLI+G EDAANNYARGHYT+GK++ID VLD++R+L + CTGLQGFL+FHSFGGGTGSGFTSLLMER++ DY +KSKLEF+IYPAP+VSTAVVEPYN+ LTTHTTL++SDCAFMVDNEAIYDICRRNLDI+RP+YTNLNRLI QIVSSITASLRFDG+LNVDL EFQTNLVPYPRIHFP+AT APV+SA KAYHE+++V+EIT+ CFEPANQMVKCDPR GKYMA CLLYRGDVVPKDVN AIA +KTK+ IQFVDWCPTGFKVGINYQPPT VPGGDLAKV R+VCMLSNTTAVAEAWARLDHKFDLMYAKRAF+HWYVGEGMEEGEF+EARE+MA+LE+DYEEV +DS         +GE  GEEY
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSA--------DGEDEGEEY 449
The following BLAST results are available for this feature:
BLAST of TCONS_00000577-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA1C0.000e+079.21Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C P... [more]
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