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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000077 ID=TCONS_00000077|Name=TCONS_00000077|organism=Clytia hemisphaerica|type=transcript|length=1686bp
GCATTTTCCATATTTTTGGTCAATATTCTCTCGTTTTATTATTATCGACT
GATCTTTTGCTTGGGGCTGGATCCTTGATTCTCAAGCTGTGAAACTGAGA
AAGACCGACATCTCTTTATAGTAACAGAAATTTTCTTAATACAAATTTCT
TATTGTGGGTTCGGTGACTCTCACTTCAAGAATTTTTCGATCATTTTGTG
CTGCCATAAGCAACAACGTGTCAATCCaagAACATCACATGGGTTTGAAA
ACGATCAACAAGAACACGAAACGAACAATTCGTTTTCACCAATACGACCA
CCAAGGGAAGAAGATCAAACATCCCAAGAAACAAAAAGTCATGACTATTA
GTTATACTCTCAAAcaacaatctgaaaaaaataacaatacaAATACGAAC
AATGTCACTCGATCTGAGCATAATTACAGCATGCAGTTATTACCGAAACA
GCGTGGTGCTggcaaattgaccaaaaaaacaAGCGAACATTATATTATTT
GTGAGATTGGTAAAATATTGTTACGCGAAGCTGAGAAAGTTAAATCCttt
gaaaaacaattaggtGAAAGTTACAACAAATTTGATTTGGACAGTTTGCA
ATCATTTCATGAATATGCTGGATATTTAGAACTTGTTAATCCTATTTGCA
GTCCTGATTCTGTGGATACTGCTGATAAACTTGTTTTGAATCTGGGAATC
TAAATCATCGATGTCATATTTTGATAATGTCTTTGGCAATCGAATTATGG
AGAATGTGAAGAGATTTTGCAAGAGATTATGGATTGCGTTGATATAAGCT
CGTTTTATTGGACCAAGCTCGTTCAAGGCTTTATTTACGCTACTGAttga
ataccctggtgttgacTAATGAGAACTTCTTGAAGGTCGAATAATACGGA
GGAAACGAGGTTGTTATTGCCTATTGGGCATTTAATTCCATTGAATACTT
TCAAATATCTATCTATGTTCTTTTCGTTCAatgaaaattaagaataatga
tATTTCGAAACCACATTGAATGGATGGAGTTACGTAACCTTTGTTTATTG
CTTTGCAGACATCTCATCATGACATTTTTGGGACTCTCAACTTGGTACTA
TTTTATACCAAGATAATCTATGGTTGTTTTCATCTGATTATATTTAaggg
aatttatttttttgaggaCTCATTATGGAGAGCAGCTAAAGTcctaaaag
ttttcaaatttttattttggcgagagCTAGTTCTATCCCAAATTAGTTTC
CTTAAGATTTTATATGGCAAGATAAGTTATTCATCACCAACCAATTTAGA
TGAATTCATAAACCGGTATTACAGAAATATTTCGAGGAGTCTTATGCCAT
ACTCCAATAATttacctactctcgggtacctaatagccgttccccccgct
aattaatttttcgaaagttttccactcaggaaattcttattccaacaccc
tccgcttattaatttttgagaaattctccACCCAACCCGCTCGTTCcaaa
ccccccgcttattataGGTACCCGAGAGAGTACAATGTTATTGAATAGAG
AAAATATTGTAAATAGGGTTATGAACATCAAACATGAATTTAGTAATTGA
TTAAATTATAATAGAACTAAGTGAGAAAGACACCTCCAAACAGTTTGATG
AAACTGTTTCTCGTTTCATTTTTCTACGTTTAAAAT Run BLAST on NCBI transcript from alignment at sc0000001:1678237..1682564+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000077 ID=TCONS_00000077|Name=TCONS_00000077|organism=Clytia hemisphaerica|type=transcript|length=4328bp|location=Sequence derived from alignment at sc0000001:1678237..1682564+ (Clytia hemisphaerica)
GCATTTTCCATATTTTTGGTCAATATTCTCTCGTTTTATTATTATCGACT
GATCTTTTGCTTGGGGCTGGATCCTTGATTCTCAAGCTGTGAAACTGAGA
AAGACCGACATCTCTTTATAGTAACAGAAATTTTCTTAATACAAATTTCT
TATTGTGGGTTCGGTGACTCTCACTTCAAGAATTTTTCGATCATTTTGTG
CTGCCATAAGCAACAACGTGTCAATCCaaggtaacattcaaattctttcG
CTTGATAATCTTTGTCAAGTCATTATTATGTTTTAAATGATTGGATtatt
atacacccccttctcacagacccggtaggattcttTCAGCTAGCGAggat
aaaaataacagactgaaGCTCAATGGGGAAtaatattcccatatttttaa
tGGCTGGCgatttaattcttttgttttcaaaaaatattttgcaatgagga
ttggtttaattgattattttcagtggggacaaaaagtggagtataatttt
ccaccgcgcggggacgatattttggccaatttttccagtgggaagggctc
ccagtgggtttgtgagaaggggttgttATTATGATTTCATCGGATGGAGT
CGCATTTCTTGTGTAGTGTAGGTCAAGTAAGCAACGTGTTCATTTTGGAT
AACTGTTTACTTAGTTACTATTTTTTATTCGATGCGCTTCTTTGATAATA
ttgagaccatgttcagacatgtgaacgtcaaaattcgaaacgttaAAAAA
GAAGGGTGAACATGGTCTGAAAGACATCGTCACCAAGAAACTGTCATAAA
CGATGCTCTACTTTTCGATACGCTTTCTTTTTCGATGATAATCGAATTCG
AGAGCGTCAACTAACTGTATAATGTTTTCTCGTTCTTCTCTTTTGAAGAA
TTTCGCTGGGAAATGAACCCACTTTATTTCCCATCCTAAAAGGAGTGACC
CgtgtgttttccaaacaaaatttctaaatgcgAGGCAactttaaggcttc
actttttcttgcttgagcaaggttaaagattcctctctagctcctccggg
gcttcaaactcaatggttcAACCCTCGCCCACATGAGACAATGGGTTTTA
AAGGTTTTACAGGTTTTAAATCTACACTCATTCAAAgcaagagattttca
aattttgttgctTGAGTACTCAGCTCTTttaagacaggggtgtttatttt
TTCGAAAGCTCTCTTTGTTTTCCCAGTTAGGTTGCGAACAtcagataaac
gttgaaacaaccttGTGTACCATCTGGTGGGTTgtctttgtaaaagattt
ttgaagtcttttgaaattaaaaaaaaaatccttagCAGCACGAGTAGCTT
GCTCGAGGCTATAAAATCCTAATTCTGTACAGTGGGAAACTCATGAGTCA
TCTTGTAAAGTGCTGACCACGagaaaaaattcgtaaaataagTAAAGTTA
CATcaccattttttttgcattgagTGTGCTTTATAATCATCCCTGCATCA
CATGACATAACAAACCATCTCATTTCCATGGTAATCGTACAGGTGTTGCA
TACATAATTGATTACAAAACAAGCTTGTTGTTCACTTCATCCTCTCGTGT
TTTACATCTCCGTCATCAATTATTCACACATTCTCAAATCCCAATcatca
atacacgttttttataagaacatactatattagaacagaagttttaaaag
aagtttccaaaatattaagaacaagtttataGCTTTTCAGAATCTAAAAA
TCGCcctatttcttaagaaattggacaaaaatagtgaaaataagaacatc
ttattaagaatatttttagaatttaaacttaaaaaagttcagaacattcg
aaggcttcaaagattttagatgttcttatgaaaaacctGTAGGGCTTATT
CATGGTATACTGAATGTGCTATTTTGCGTGGCTTTTCCCATCGCTCCCTT
TTTGTCTCACAACAATGACGTGTGGTTTTTCTGTGGGATTGCCACTTTTA
AGGTGTAttaatagtgtaggttttaagatGTCACTTGATTTTAAtgtaca
tttttgaaaatatttagatcTAATTGTAGTATtagtaactttgcagtgaa
tcaATATTCAAATTTGACACCAGAaggactattttataaaaccattttgt
aggtttatCGGGTAAATAGCTCGGGGGGGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgggggggggtactaccct
tgtcgaccgacgggggtgctccgctgaggttcgaaaaatggaccctacgt
gggactcgaaatttgcgaaaaagtgaccttgaaaaaaattccgaaatttt
ctcaaattttctactttttccccaaattttccaaaaaaaggcatcCTACG
ATAGactgatttttctgttttggtgtttttgccaccctacctgggactcg
tggaggttaaaaaaggtaccctgaccagcggagctaaaattgcatttttt
tcaCGAAGCAAGAAAAGTTTTCTTAGCAGCTTTTACAAAATACCATACCC
GTGGAAGAAATTCATAGGTAGCCTAGACTCACCCGAAGAAGTTTCAGCCC
TTACTGTTTTCTCTATCAGGATATaggggtaccttttttgttgtaggttt
taaggggtatccactggtatgcttctccttttctttatttttaacttctt
ttttttttaattctttttccaGAACATCACATGGGTTTGAAAACGATCAA
CAAGAACACGAAACGAACAATTCGTTTTCACCAATACGACCACCAAGGGA
AGAAGATCAAACATCCCAAGAAACAAAAAGTCATGACTATTAGTTATACT
CTCAAAcaacaatctgaaaaaaataacaatacaAATACGAACAATGTCAC
TCGATCTGAGCATAATTACAGCATGCAGTTATTACCGAAACAGCGTGGTG
CTggcaaattgaccaaaaaaacaAGCGAACATTATATTATTTGTGAGATT
GGTAAAATATTGTTACGCGAAGCTGAGAAAGTTAAATCCtttgaaaaaca
attaggtGAAAGTTACAACAAATTTGATTTGGACAGTTTGCAATCATTTC
ATGAATATGCTGGATATTTAGAACTTGTTAATCCTATTTGCAGTCCTGAT
TCTGTGGATACTGCTGATAAACTTGTTTTGAATCTGGGAATCTAAATCAT
CGATGTCATATTTTGATAATGTCTTTGGCAATCGAATTATGGAGAATGTG
AAGAGATTTTGCAAGAGATTATGGATTGCGTTGATATAAGCTCGTTTTAT
TGGACCAAGCTCGTTCAAGGCTTTATTTACGCTACTGAttgaataccctg
gtgttgacTAATGAGAACTTCTTGAAGGTCGAATAATACGGAGGAAACGA
GGTTGTTATTGCCTATTGGGCATTTAATTCCATTGAATACTTTCAAATAT
CTATCTATGTTCTTTTCGTTCAatgaaaattaagaataatgatATTTCGA
AACCACATTGAATGGATGGAGTTACGTAACCTTTGTTTATTGCTTTGCAG
ACATCTCATCATGACATTTTTGGGACTCTCAACTTGGTACTATTTTATAC
CAAGATAATCTATGGTTGTTTTCATCTGATTATATTTAagggaatttatt
tttttgaggaCTCATTATGGAGAGCAGCTAAAGTcctaaaagttttcaaa
tttttattttggcgagagCTAGTTCTATCCCAAATTAGTTTCCTTAAGAT
TTTATATGGCAAGATAAGTTATTCATCACCAACCAATTTAGATGAATTCA
TAAACCGGTATTACAGAAATATTTCGAGGAGTCTTATGCCATACTCCAAT
AATttacctactctcgggtacctaatagccgttccccccgctaattaatt
tttcgaaagttttccactcaggaaattcttattccaacaccctccgctta
ttaatttttgagaaattctccACCCAACCCGCTCGTTCcaaaccccccgc
ttattataGGTACCCGAGAGAGTACAATGTTATTGAATAGAGAAAATATT
GTAAATAGGGTTATGAACATCAAACATGAATTTAGTAATTGATTAAATTA
TAATAGAACTAAGTGAGAAAGACACCTCCAAACAGTTTGATGAAACTGTT
TCTCGTTTCATTTTTCTACGTTTAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000077-exon-sc0000001-1491911889:1678237..1678466 | TCONS_00000077-exon-sc0000001-1491911889:1678237..1678466 | Clytia hemisphaerica | exon |
| TCONS_00000077-exon-sc0000001-1510915933:1678237..1678466 | TCONS_00000077-exon-sc0000001-1510915933:1678237..1678466 | Clytia hemisphaerica | exon |
| TCONS_00000077-exon-sc0000001-1575043694:1678237..1678466 | TCONS_00000077-exon-sc0000001-1575043694:1678237..1678466 | Clytia hemisphaerica | exon |
| TCONS_00000077-exon-sc0000001-1491911889:1681109..1682564 | TCONS_00000077-exon-sc0000001-1491911889:1681109..1682564 | Clytia hemisphaerica | exon |
| TCONS_00000077-exon-sc0000001-1510915933:1681109..1682564 | TCONS_00000077-exon-sc0000001-1510915933:1681109..1682564 | Clytia hemisphaerica | exon |
| TCONS_00000077-exon-sc0000001-1575043694:1681109..1682564 | TCONS_00000077-exon-sc0000001-1575043694:1681109..1682564 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:1678237..1682564 + |
Blast
The following BLAST results are available for this feature:
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