TCONS_00002560 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002560
Unique NameTCONS_00002560
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1225

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002560 ID=TCONS_00002560|Name=TCONS_00002560|organism=Clytia hemisphaerica|type=transcript|length=1225bp
CTTGCTGATCGTCGATTTTTATACTGCGCTCGAATTTAGCAATGGCCTTA
GCTTGGCCTTCCACCATTGAACTACAGAAACTCTTAAATTTATCATCTTC
ATGTTCATGTGAGTCCTCAAGAGCTGAGTTCCCAGGATATGAGCTACATC
TGTTATGGATATTAGATTGATTCTGACTCTGGTGTATTTCTCTCGCTGGT
GAAGGGGTTCTACCACTTTGATTTTGGATACCAGAATACATATTGCTAGG
AAGTGTTTGACTTTTGTGTATTCCCGAACTACCCGGGATATCAACAAAGT
CAAAGGGCCCTTGTCTTCCTGAGGGCCCTTGAAAACACAAGTCCTGATGA
CTATTATTCTCAGGGTAAGAATCATAGTCCTCATAAAGCCGAGGTAACGG
CATACTTGGTGTCTCGGGGAACGCAGCTTCAAATTGTGCATCTAACTCAC
CAGTCATTGCCAGTCTCTTGGCATCTACACGAAAGAATTCTTCAGCAATC
TGGTAACTTTCACTGGTATAAAATCGACCATGATTAGCTTTGACAATCTC
CTTAACTTTCCTTAAAATATGTGTAGCATCTTTGTTAGTTGCTAAATCTT
TAGTATTGTCAATACCGATATAACCTTGAGAATATTGATTGATAATTTTC
TGGAGCATTGGAGGAGCATTCATCACAAGATCATccaaacttttcttctt
tcgtTTTCGTTGGTCATCATGTGTAAAAACCACAAGCAAATAATCCTTCA
AATTCTCACCAAATAGTTTCatgagaacttcaaaaacaAATGCATTCTCG
TGTGTAAAACGACCCTCACCAATCACCAAAATCATTGCATGAATCCCAGG
GCTTGTAATTCGGATACACTTCAGAATCTCATTTGCAGTTTGCTTTAAAT
CTGCATCACCTCTTGTATCCAACAACCCTGGAGTATCGACAACCAATATT
GTACGTCCATCGCGTATCGTTTTATCGAAAAGCGATTCTCTCGTTTCTGA
GGTGAAACTACAACTTTCTTTGAAAACCTCACGACCCAGCAATGTATTAC
CAGTACTGCTTTTCCCAGATCCTGTTTTCCCGATCAAAACAATACGTAAT
TCATCTTCGATTGTACCCATTacaacttattttttctaaaagtatTTGAA
ATAAACTTGataaaatacacccctgtgtcacagacccggtggacccctca
ccccggtggaaaaataggccaaaaa
Run BLAST on NCBI

protein sequence of TCONS_00002560-protein

>TCONS_00002560-protein ID=TCONS_00002560-protein|Name=TCONS_00002560-protein|organism=Clytia hemisphaerica|type=polypeptide|length=373bp
MGTIEDELRIVLIGKTGSGKSSTGNTLLGREVFKESCSFTSETRESLFDK
TIRDGRTILVVDTPGLLDTRGDADLKQTANEILKCIRITSPGIHAMILVI
GEGRFTHENAFVFEVLMKLFGENLKDYLLVVFTHDDQRKRKKKSLDDLVM
NAPPMLQKIINQYSQGYIGIDNTKDLATNKDATHILRKVKEIVKANHGRF
YTSESYQIAEEFFRVDAKRLAMTGELDAQFEAAFPETPSMPLPRLYEDYD
SYPENNSHQDLCFQGPSGRQGPFDFVDIPGSSGIHKSQTLPSNMYSGIQN
QSGRTPSPAREIHQSQNQSNIHNRCSSYPGNSALEDSHEHEDDKFKSFCS
SMVEGQAKAIAKFERSIKIDDQQ
Run BLAST on NCBI

transcript from alignment at sc0000020:381062..382286

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002560 ID=TCONS_00002560|Name=TCONS_00002560|organism=Clytia hemisphaerica|type=transcript|length=1225bp|location=Sequence derived from alignment at sc0000020:381062..382286 (Clytia hemisphaerica)
tttttggcctatttttccaccggggtgaggggtccaccgggtctgtgaca
caggggtgtattttatCAAGTTTATTTCAAatacttttagaaaaaataag
ttgtAATGGGTACAATCGAAGATGAATTACGTATTGTTTTGATCGGGAAA
ACAGGATCTGGGAAAAGCAGTACTGGTAATACATTGCTGGGTCGTGAGGT
TTTCAAAGAAAGTTGTAGTTTCACCTCAGAAACGAGAGAATCGCTTTTCG
ATAAAACGATACGCGATGGACGTACAATATTGGTTGTCGATACTCCAGGG
TTGTTGGATACAAGAGGTGATGCAGATTTAAAGCAAACTGCAAATGAGAT
TCTGAAGTGTATCCGAATTACAAGCCCTGGGATTCATGCAATGATTTTGG
TGATTGGTGAGGGTCGTTTTACACACGAGAATGCATTtgtttttgaagtt
ctcatGAAACTATTTGGTGAGAATTTGAAGGATTATTTGCTTGTGGTTTT
TACACATGATGACCAACGAAAacgaaagaagaaaagtttggATGATCTTG
TGATGAATGCTCCTCCAATGCTCCAGAAAATTATCAATCAATATTCTCAA
GGTTATATCGGTATTGACAATACTAAAGATTTAGCAACTAACAAAGATGC
TACACATATTTTAAGGAAAGTTAAGGAGATTGTCAAAGCTAATCATGGTC
GATTTTATACCAGTGAAAGTTACCAGATTGCTGAAGAATTCTTTCGTGTA
GATGCCAAGAGACTGGCAATGACTGGTGAGTTAGATGCACAATTTGAAGC
TGCGTTCCCCGAGACACCAAGTATGCCGTTACCTCGGCTTTATGAGGACT
ATGATTCTTACCCTGAGAATAATAGTCATCAGGACTTGTGTTTTCAAGGG
CCCTCAGGAAGACAAGGGCCCTTTGACTTTGTTGATATCCCGGGTAGTTC
GGGAATACACAAAAGTCAAACACTTCCTAGCAATATGTATTCTGGTATCC
AAAATCAAAGTGGTAGAACCCCTTCACCAGCGAGAGAAATACACCAGAGT
CAGAATCAATCTAATATCCATAACAGATGTAGCTCATATCCTGGGAACTC
AGCTCTTGAGGACTCACATGAACATGAAGATGATAAATTTAAGAGTTTCT
GTAGTTCAATGGTGGAAGGCCAAGCTAAGGCCATTGCTAAATTCGAGCGC
AGTATAAAAATCGACGATCAGCAAG

Coding sequence (CDS) from alignment at sc0000020:381062..382286

>TCONS_00002560 ID=TCONS_00002560|Name=TCONS_00002560|organism=Clytia hemisphaerica|type=CDS|length=1119bp|location=Sequence derived from alignment at sc0000020:381062..382286 (Clytia hemisphaerica)
ATGGGTACAATCGAAGATGAATTACGTATTGTTTTGATCGGGAAAACAGG
ATCTGGGAAAAGCAGTACTGGTAATACATTGCTGGGTCGTGAGGTTTTCA
AAGAAAGTTGTAGTTTCACCTCAGAAACGAGAGAATCGCTTTTCGATAAA
ACGATACGCGATGGACGTACAATATTGGTTGTCGATACTCCAGGGTTGTT
GGATACAAGAGGTGATGCAGATTTAAAGCAAACTGCAAATGAGATTCTGA
AGTGTATCCGAATTACAAGCCCTGGGATTCATGCAATGATTTTGGTGATT
GGTGAGGGTCGTTTTACACACGAGAATGCATTtgtttttgaagttctcat
GAAACTATTTGGTGAGAATTTGAAGGATTATTTGCTTGTGGTTTTTACAC
ATGATGACCAACGAAAacgaaagaagaaaagtttggATGATCTTGTGATG
AATGCTCCTCCAATGCTCCAGAAAATTATCAATCAATATTCTCAAGGTTA
TATCGGTATTGACAATACTAAAGATTTAGCAACTAACAAAGATGCTACAC
ATATTTTAAGGAAAGTTAAGGAGATTGTCAAAGCTAATCATGGTCGATTT
TATACCAGTGAAAGTTACCAGATTGCTGAAGAATTCTTTCGTGTAGATGC
CAAGAGACTGGCAATGACTGGTGAGTTAGATGCACAATTTGAAGCTGCGT
TCCCCGAGACACCAAGTATGCCGTTACCTCGGCTTTATGAGGACTATGAT
TCTTACCCTGAGAATAATAGTCATCAGGACTTGTGTTTTCAAGGGCCCTC
AGGAAGACAAGGGCCCTTTGACTTTGTTGATATCCCGGGTAGTTCGGGAA
TACACAAAAGTCAAACACTTCCTAGCAATATGTATTCTGGTATCCAAAAT
CAAAGTGGTAGAACCCCTTCACCAGCGAGAGAAATACACCAGAGTCAGAA
TCAATCTAATATCCATAACAGATGTAGCTCATATCCTGGGAACTCAGCTC
TTGAGGACTCACATGAACATGAAGATGATAAATTTAAGAGTTTCTGTAGT
TCAATGGTGGAAGGCCAAGCTAAGGCCATTGCTAAATTCGAGCGCAGTAT
AAAAATCGACGATCAGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001379XLOC_001379Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002560-proteinTCONS_00002560-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002560-exon-sc0000020-1491911889:381062..382286TCONS_00002560-exon-sc0000020-1491911889:381062..382286Clytia hemisphaericaexon
TCONS_00002560-exon-sc0000020-1510915933:381062..382286TCONS_00002560-exon-sc0000020-1510915933:381062..382286Clytia hemisphaericaexon
TCONS_00002560-exon-sc0000020-1575043694:381062..382286TCONS_00002560-exon-sc0000020-1575043694:381062..382286Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:381062..382286 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.493833	0.672467	1.29473	1.02055	0.707553	1.44186	3.11196	3.08709	3.7277	3.65993	1.36311	1.31654	2.11582	1.82563	1.21542	1.72912	1.2812	1.12883	7.04831	3.7475	0.144937	0.153299	0.348817	0.317163
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006703G_AIG1
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00002560 vs. Swiss-Prot (Human)
Match: GIMA4 (GTPase IMAP family member 4 OS=Homo sapiens GN=GIMAP4 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.686e-23
Identity = 77/212 (36.32%), Postives = 127/212 (59.91%), Query Frame = -1 
Query:  488 ELRIVLIXXXXXXXXXXXXXXXGREVF-----KESCSFTSETRESLFDKTIRDGRTILVVDTPGLLDTRGDADLKQTANEILKCIRITSPGIHAMILVIGEGRFTHENAFVFEVLMKLFGENLKDYLLVVFTHDDQRKRKKKSLDDLVMNAPPMLQKIINQYSQGYIGIDNTKDLATNKDA--THILRKVKEIVKANHGRFYTSESYQIAEE 1102
            +LRIVL+GKTG+GKS+TGN++LGR+VF      +S +   E R S + +T      ++VVDTPG+ DT  +    +T+ EI++CI +TSPG HA++LV+  GR+T E     E ++K+FGE  + +++++FT  D       +L D +  AP  +Q +++ +   Y  ++N K     ++A    +L  ++ +V+ N    YT+  YQ AEE
Sbjct:   30 QLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET-----ELVVVDTPGIFDT--EVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDD--LGDTNLHDYLREAPEDIQDLMDIFGDRYCALNN-KATGAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAEE 231
The following BLAST results are available for this feature:
BLAST of TCONS_00002560 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GIMA42.686e-2336.32GTPase IMAP family member 4 OS=Homo sapiens GN=GIM... [more]
back to top