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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002429 ID=TCONS_00002429|Name=TCONS_00002429|organism=Clytia hemisphaerica|type=transcript|length=1383bp
ggggtgtatacattgaaatattattttgggCCATGTTTCCGTTGATTTTG
ACTATTGAATTAGACTGTTCAAGTGTAAAacaagctttgaaaaaatcaaa
tatctcaAGCACATGTTCGCTTACATACCCGGTGATTAACGAGAAATACC
TTTTCCATGTGTATCACTTAAAGCAATCATCTTGAATGGAATTGGTTAAT
TTTATGACATGCCTTCATAATTGTCAGATCTGGCAGTGTTTAAAGACGTG
TGAGGGAGAGAGTTTATTTACATATAAGTCGTATGGATAAACTTATAGCT
CTCTACAATCGCATAACTTTAACTTGCCAAAAAATCTTCCTTCTTTAATT
AGCAAGTACTTGAACTTTGAAGTAGCAGGAGAAAAGCAGAATACATTGAT
AAACAAGAGGAGCAGGATCACATAACAAGAAGAAAAGACAATTTCAGCCA
AGAAACCAAAGAAGAGCTAAAACAACATTATAAAGCTATGAACAACCAAG
GAAACCCAGGGTACGAGCGCCAGCACAATGAAGGCGTTAACATGACGCCA
ATTGCAAATCAACCAATACCTTTACAGCAGAATCCAGTTGGATTTCCTGT
TCAGATGCAATCATTGGACCATTATCCATCTAACCATAAATGCTTGGCTT
GCACAGGATTGATATGCACGGGATGTACGTACTGTTGTTGTCCAATAGGT
ATGGCTGCTGTCGCATCATCGAATCACGTTGATATGGCAATGACAATGAG
AAACTACGAAGCTGCTGATATCCATTCTCGACGAACAAAAACGTTGGCCA
TTGTTGCTATTGCCGTTGGAACTTTTTTACTTATTCTGTTTTTTATCCTC
GCCTTTACTGCTGGTCGAAAGCACTTTTGATAGAGTTTATTATTCTCCGA
TTCAGTTTTGTTAAAGTAATATTTCCTTTTaacactttcaaccaatcatt
TTGTGCTATGCTAAATAATTTAAGCGGGAACTAATATTGTCgcttttttc
gtgatttttcggcaaaatcgcgaaaattaaattCCACAAGCTATAAATTT
GACCATTTCCCATCAAAAATCccaaggaaaaaaaagaaatgtgtGCGAAA
AAGGGAGAAACTGCAAAAATCGATTTCCacgaaatgtgattttttcaact
ttttcgactgcgaaaattagttcctgctAAAATTAGTTCACTTATATgtc
cttaagggctctgaccatagtcaaaaattAGTATTTCAGTTTAATGTCGA
TATTTTGGCTGAAGGTTCCTTTTAGgaactagcaaaaaactgcGTTTACA
GAATTGTGAAATATTAATTCCTTCGCCAGATATTTAGTATCAAACTTTGT
GTATCTAAAACCTcatcttttaaaatcaaaact Run BLAST on NCBI transcript from alignment at sc0000020:302134..307451+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002429 ID=TCONS_00002429|Name=TCONS_00002429|organism=Clytia hemisphaerica|type=transcript|length=5318bp|location=Sequence derived from alignment at sc0000020:302134..307451+ (Clytia hemisphaerica)
ggggtgtatacattgaaatattattttgggCCATGTTTCCGTTGATTTTG
ACTATTGAATTAGACTGTTCAAGTGTAAAacaagctttgaaaaaatcaaa
tatctcaAGCACATGTTCGCTTACATACCCGGTGATTAACGAGAAATACC
TTTTCCATGTGTATCACTTAAAGCAATCATCTTGAATGGAATTGGTTAAT
TTTATGACATGCCTTCATAATTGTCAGATCTGGCAGTGTTTAAAGACGTG
TGAGGGAGAGAGTTTATTTACATATAAGTCGTATGGATAAACTTATAGCT
CTCTACAATCGCATAACTTTAACTTGCCAAAAAATCTTCCTTCTTTAATT
AGCAAGTACTTGAACTTTGAAGTAGCAGGAGAAAAGCAGAATACATTGAT
AAACAAGAGGAGCAGGATCACATAACAAGAAGAAAAGACAATTTCAGCCA
AGAAACCAAAGAAGAGCTAAAACAACATTATAAAGCTATGAACAACCAAG
GTATCTAGACGTTTTCCAtactacacccccttctcagaGAGCCGGTGGGA
TTTAATCAgctagtgggggtaaaaataacggaccaaaaatCGATGGAGAT
CTTGATATTCCAATAGTTtggttaccttaagggaacttattttggcggga
actaattttggcgagcagcgaaaatcttacaaaattttaattttggcggg
aactaattttggcaaatgacagcgtaaatctgttctatcttgccttattt
tgagcaattttgatgaatttcaggggttatttaggcaaggaaacaaaaaa
ttaaattttggcgggaacttattttggcgagtgagcaaaatatttaattt
tggcgggaactaaatttggcgaatttcgtctaaattcgccaaattcgcca
aaattagttcccgccaaaataagttcccttaaggtagttttggctgggga
tttgaattccattgtcttctagccagaaaattcagtggggatgaaaaaaa
tagcacaatattttgcagtggggatttgcttatatgattattttcagcgg
agaCGAAAATCAGAGTATAAtcttccaccggggacgatattttggccaat
ttttacagtgggaagggttcccagtgggtctatgagaagggggtgtcata
CGGCCAAGAGGAATTTTTCGGCTGCCATAAATTTGATTTAGGAGCTAGCT
CAAAAATCTGGTACAGTGAAACTCTAAACAGTCTTTATCTTTATCGAACC
GTCACGAGGGGTACaagtttgttcgagttaaggaaatttcgggttatgga
gtaaggtttgcaagacattagcgaggttaagcacgggtttattttgtgta
cataacttgccaaaaCAAACCATCCNttagcgaggttaagcacgggATTA
TTTTGTGTACATAACTTGCGAAAGCAAACCATGtaagtgaaatcttatgt
acaggcctacggtatcgcattgaacggtctaaataaacacttgcttaacc
tcgctattgttaactgaagtgacgagaaaacttgttcaagtTCAGCGAGA
CATTCGCGCCGTAGAGGTTTGAGTTTAAGAGACTCTTATTAATTGAAGGA
catcaattctttcaattttcacggtataaaaatagtaaaaatattttaaa
atggcACATTACACTATTTACTAACATGTAATTACTTGGCTTTTGGCTTT
TTGCccataatttttcgaaatttccttaatttCCATTAAACTTATTATgc
gagatttaaaaaattgatgtAAATACTTGGGGTCCCCTCGTTGGGCTCTA
AATTGATNAAAATTATTATgcgagatttaaaaaattgatgtGAATGTTAA
TACTTGGGGTCCCCTCGTCGGGCTCAAAATTGACACTGTTACAAGAAACT
GTTCAAGtgatcaaaaataatttttttacgcTCTTATGAATTTACTTAAG
GctgtgtaaaatatttttgcctcgATTGTTTACAGGAAACCCAGGGTACG
AGCGCCAGCACAATGAAGGCGTTAACATGACGCCAATTGCAAATCAACCA
ATACCTTTACAGCAGGTTCGTAACTTATGGCTAAGTTTGAATCTTCAtga
tttgtgaaaaaaatcttcaatatatatatagtattttaatatttgcgcgc
gtttcatactttcacaaaacacatctttttacatctttttatctgtggtg
gtgtctagataacactgcttggcctacctacacaaccctatttccatcat
ataggaggatattttcacaaatggccgaaatcctgtgtaggtcgaaaact
gaggaacagataatgtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatttgtattgtctttttgt
tttgtgggtttttgtctttattgtttccattttgagtagttgaaggtttt
atacttctagactatatatatatatatatatgtataAATTAGTTTTCTCA
ATgtagacacatatttcatatcaggacagtgtctgtctattgttatagta
tgctgatataagcaaaaaatgttttttcctctttctaatcaatcttgctc
cacatccgtgtcaaacCAGTGTGAAAAATCTtgctaaataaaattgaaga
ggagcaaacgatatcacttttatttaaatACAAAACCTTTAATGATTTGT
AACagagaaacaaaaaaaacaaaaaaNacacatgagctgcattttagtct
ccattgccatattccattttaaatctgtatatatttgaaataattctgtg
tcgtgtttgaaaaatcaagccaccaatcgttaaacgagacagatccagaa
ataaccattttcatgTANTCTTAGCAGAAAAGTAACTTTGATCTTTTGAC
TACAATTTCTTCATATTTATAGAATCCAGTTGGATTTCCTGTTCAGATGC
AATCATTGGACCATTATCCATCTAACCATAAATGCTTGGCTTGCACAGGA
TTGATATGCACGGGATGTACGTACTGTTGTTGTCCAATAGGTATGGCTGC
TGTCGCATCATCGAATCACGTAAGTGGCTACCATTATTGGCCATTATCAC
ACCCCTGNTGTGTCGAGTAcgttgtcgagtttgaaaatcatgccaCGTCC
CACTGTCACTGTACTGACCGTTGtttaacagcgacagatccagaagcaAC
ATTGtgtcttattcaaatttacacatttcagtttatttacNATGTACGTA
CTGTTGTTGTCCAATAGGTATGGCTGCTGTCGCATCATCGAATCACGTAA
GTGGCTACCATTATTGGCCAttatcacacccctgtctcacagccccggtg
aaacctTTTTCCTCTGTGGGGATAAAGATTCtttttgaaatcccaatggg
gatagaaattctattcaatgttaaacaagaagcccgttgggcgtgaaggc
ccagcaaaagtgaAATGTTTGcgcgcgattttcgcgaatttcggaatttc
taaaaattccaaaaaatgtttaacaagatttcaaatttccccCAGGAAAG
GGATGGCCAAAGGATTTAANNNNNNNNNNNNNNNNNNNNNNNNAGCCcta
aagctttatgaaaacttgagcaaaaactataagatatgacagaatgttga
aaaaggtttacaaagaaaaatcactaaaaggtttctttggtttgaaaagt
ctctaaagcaaagaaaatattcaagaaagtatgaatcaacacgAATCAAT
TTCCTcccttcgaccgccatcttgttttgttttgaaaacgtttgttgttt
aaggagcgcgaaatcagaaaatatatcttttttagccagtacccgacttt
agtaagcttttccctgtccagacggcaaaaagtgtgatactggtattaag
cgccgtttctaccaaaacggacagacagaaggaaacacggacaaaaaaat
agtgaGACTCTCattaaaggcccactcgctagcgctgggccaaaaatcCA
GTGTGGATGGTTTTGAGTGCAATatttaaattgaatttcgagtggggatg
aaatcaaagtcaatttgccagtggggctgaaattccaaggCATTTTCCCA
ACGGGGACAAATTTTTAGCCacatttcccagtggggctgggataccagcg
ggtctgtgacatagGGGTGTATTATCTCAAGAATACACAGAGAGCCTGCA
ATctcccatttttctttctagcaatgaaagtgaaatctcacttttgtccc
tgtgacaaaatcttttcataggcgtagcgagataccctgcaaaatttatg
gatgagagcggtttttacgacactgtaattattgtctttgtttcatcaaa
agatAATGGATATGTCATAAACGTGTGCACTCCCTCACAAATTTTGCAAG
GTATCTCGCTTCGTCTAtgcttttgggtatttccctcactttttgtccca
tgaaacaaaaaaagggtgggatggagcatgttgcattgcaccaacgcgaa
aaaaaattctcgtctccccaagcctttaatcattcatatatattttttca
ctttttatccAGGTTGATATGGCAATGACAATGAGAAACTACGAAGCTGC
TGATATCCATTCTCGACGAACAAAAACGTTGGCCATTGTTGCTATTGCCG
TTGGAACTTTTTTACTTATTCTGTTTTTTATCCTCGCCTTTACTGCTGGT
CGAAAGCACTTTTGATAGAGTTTATTATTCTCCGATTCAGTTTTGTTAAA
GTAATATTTCCTTTTaacactttcaaccaatcattTTGTGCTATGCTAAA
TAATTTAAGCGGGAACTAATATTGTCgcttttttcgtgatttttcggcaa
aatcgcgaaaattaaattCCACAAGCTATAAATTTGACCATTTCCCATCA
AAAATCccaaggaaaaaaaagaaatgtgtGCGAAAAAGGGAGAAACTGCA
AAAATCGATTTCCacgaaatgtgattttttcaactttttcgactgcgaaa
attagttcctgctAAAATTAGTTCACTTATATgtccttaagggctctgac
catagtcaaaaattAGTATTTCAGTTTAATGTCGATATTTTGGCTGAAGG
TTCCTTTTAGgaactagcaaaaaactgcGTTTACAGAATTGTGAAATATT
AATTCCTTCGCCAGATATTTAGTATCAAACTTTGTGTATCTAAAACCTca
tcttttaaaatcaaaact
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002429-exon-sc0000020-1491911889:302134..302633 | TCONS_00002429-exon-sc0000020-1491911889:302134..302633 | Clytia hemisphaerica | exon |
| TCONS_00002429-exon-sc0000020-1510915933:302134..302633 | TCONS_00002429-exon-sc0000020-1510915933:302134..302633 | Clytia hemisphaerica | exon |
| TCONS_00002429-exon-sc0000020-1575043694:302134..302633 | TCONS_00002429-exon-sc0000020-1575043694:302134..302633 | Clytia hemisphaerica | exon |
| TCONS_00002429-exon-sc0000020-1491911889:304119..304198 | TCONS_00002429-exon-sc0000020-1491911889:304119..304198 | Clytia hemisphaerica | exon |
| TCONS_00002429-exon-sc0000020-1510915933:304119..304198 | TCONS_00002429-exon-sc0000020-1510915933:304119..304198 | Clytia hemisphaerica | exon |
| TCONS_00002429-exon-sc0000020-1575043694:304119..304198 | TCONS_00002429-exon-sc0000020-1575043694:304119..304198 | Clytia hemisphaerica | exon |
| TCONS_00002429-exon-sc0000020-1491911889:305156..305302 | TCONS_00002429-exon-sc0000020-1491911889:305156..305302 | Clytia hemisphaerica | exon |
| TCONS_00002429-exon-sc0000020-1510915933:305156..305302 | TCONS_00002429-exon-sc0000020-1510915933:305156..305302 | Clytia hemisphaerica | exon |
| TCONS_00002429-exon-sc0000020-1575043694:305156..305302 | TCONS_00002429-exon-sc0000020-1575043694:305156..305302 | Clytia hemisphaerica | exon |
| TCONS_00002429-exon-sc0000020-1491911889:306796..307451 | TCONS_00002429-exon-sc0000020-1491911889:306796..307451 | Clytia hemisphaerica | exon |
| TCONS_00002429-exon-sc0000020-1510915933:306796..307451 | TCONS_00002429-exon-sc0000020-1510915933:306796..307451 | Clytia hemisphaerica | exon |
| TCONS_00002429-exon-sc0000020-1575043694:306796..307451 | TCONS_00002429-exon-sc0000020-1575043694:306796..307451 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000020 | supercontig | sc0000020:302134..307451 + |
Blast
The following BLAST results are available for this feature:
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