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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002413 ID=TCONS_00002413|Name=TCONS_00002413|organism=Clytia hemisphaerica|type=transcript|length=1434bpRun BLAST on NCBI protein sequence of TCONS_00002413-protein >TCONS_00002413-protein ID=TCONS_00002413-protein|Name=TCONS_00002413-protein|organism=Clytia hemisphaerica|type=polypeptide|length=459bp LDDNSTKELFKYLKKSLMYKDYSRYEVLKAAMNLINTHGTLWKEYLTKDARun BLAST on NCBI transcript from alignment at sc0000020:25183..49086+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002413 ID=TCONS_00002413|Name=TCONS_00002413|organism=Clytia hemisphaerica|type=transcript|length=23904bp|location=Sequence derived from alignment at sc0000020:25183..49086+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000020:25183..49086+ >TCONS_00002413 ID=TCONS_00002413|Name=TCONS_00002413|organism=Clytia hemisphaerica|type=CDS|length=20700bp|location=Sequence derived from alignment at sc0000020:25183..49086+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002413 vs. Swiss-Prot (Human)
Match: PRKDC (DNA-dependent protein kinase catalytic subunit OS=Homo sapiens GN=PRKDC PE=1 SV=3) HSP 1 Score: 174.481 bits (441), Expect = 6.773e-46 Identity = 120/448 (26.79%), Postives = 220/448 (49.11%), Query Frame = 2
Query: 5 DDNSTKELFKYLKKSLMYK-DYSRYEVLKAAMNLINTHGTLWKEYLTKDAEEIIQALNHWSDHLNRDVKYLAMDTVNYVLLQISVFISEQGKVGQKQYASTLLKLMQKFSKTLSSSQPSAKELSMAINGYGKLSEACKEYMPENEMKKMFEEIIKRTEQCFMNLKGRDDSDLHQLPTFLEALLRILNNLPEISQSTLNPLERILITLFDYYPWLGKNGQFVFKRGFTMFVQVLAGHPSLMKYSLGTLLYQCLIRSCSHALPELQQESGEEETDDYR-SKDVQI------SYKTFLPLWIHLIDHQNYNILPMSEE-------ESRNLKEIVYDGVINAVLSTLNKLNLTAQKEXXXXXXXXXXXXXXXXKHDADPTSGLVATMPNDFQVFVNIVEFVRGLISTHSMSSFERWQLVFVENVITLSSRYPLVSGFYKLLQTTCQIIEKIK 1303
D +++E+F ++ K++ + D RY V A + L H + + L + + + L W H N ++K A+ + L Q+S +++ ++ + + L M++F + + + KELS+AI GYG + CK + ++ M+ E+I+R +Q F+ D ++Q+P+FL+++ +L L + + LE +++ D +P Q V R LA +++ + T+++Q LIR CS P + + E E++D+R S +V+ +YK ++ L+ HL+ +++E S +L ++YD + +VL + KL+LT + ++ + D +DP + L P DF F+N+VEF R ++ FE W F +I S+R PL+SGFYKLL T + +KIK
Sbjct: 241 DPQTSREIFNFVLKAIRPQIDLKRYAVPSAGLRLFALHASQFSTCLLDNYVSLFEVLLKWCAHTNVELKKAALSALESFLKQVSNMVAKNAEM----HKNKLQYFMEQFYGIIRNVDSNNKELSIAIRGYGLFAGPCK-VINAKDVDFMYVELIQRCKQMFLTQTDTGDDRVYQMPSFLQSVASVLLYLDTVPEVYTPVLEHLVVMQIDSFPQYSPKMQLVCCRAIVKVFLALAAKGPVLRNCISTVVHQGLIRICSK--PVVLPKGPESESEDHRASGEVRTGKWKVPTYKDYVDLFRHLLSSDQMMDSILADEAFFSVNSSSESLNHLLYDEFVKSVLKIVEKLDLTLEIQTVGEQENGDEAPGVWMIPTSDPAANLHPAKPKDFSAFINLVEFCREILPEKQAEFFEPWVYSFSYELILQSTRLPLISGFYKLLSITVRNAKKIK 681 The following BLAST results are available for this feature:
BLAST of TCONS_00002413 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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