TCONS_00002391 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002391
Unique NameTCONS_00002391
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length782

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002391 ID=TCONS_00002391|Name=TCONS_00002391|organism=Clytia hemisphaerica|type=transcript|length=782bp
TTGTGGTAAATGACGAAAAAAGAATGAGGTTGCCCAACCACAAATATCTT
TAGTCAAAATGGCTGCCTGCTGTAAATTCCAATCTCCTGTATAGACCGAG
AAGCATCTTGTATCGTAATACAAATAGTTCTCTTGAAGCGTGAAATAAAT
AAGTAGAAAATAAACCGGTTAGGTAATATATAGCTCTTACCGATAAACGT
TCCGTTTGAAACATTCCGTTTGAGCAGTAGCGTGATGGATCGACCAAAAT
ATGGGTATTTCAtacccggcggaacaaccgttaaaTAAAGTGGTGAGGCT
GAAGGCTCAGATGGGATAAAATTCACTaggaatttgaaaaagaaatctca
TGTTCTCAAACGTGGGGCATGAGgttgaagtctccccagtctccccactT
CCACCGGGCCTGTATTATAACTCCTTTTGGCTGAAAAACTGCTAACAGTA
GGGTGTAAAGTAGCCAAGGGGCACAaaaattagtaatcagaggcTTCTTT
TGCCCTCCCTTGATTTACTTATATTATTCAAGAAAGTCACTTACGGAAAT
CGACATGAAATGTTTGATAAAACATTTGCATATCAGCATTGGGGCAACTA
CTACTGATAACCATGCGCTTATTCTGTGAGTCTCGACAAACCATTTTCCC
TGAACAATGATGTATCAATCTACCAAGTTCCCTATCGAAGCTGAAATAAG
CAGCTCGGTTTGTGTTACAGATCTGTATATCATTTTCAACAGTAACAAGT
TCCTTGACTCCATGCCCAATCTCGCAATCTCT
Run BLAST on NCBI

transcript from alignment at sc0000019:603594..604375

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002391 ID=TCONS_00002391|Name=TCONS_00002391|organism=Clytia hemisphaerica|type=transcript|length=782bp|location=Sequence derived from alignment at sc0000019:603594..604375 (Clytia hemisphaerica)
AGAGATTGCGAGATTGGGCATGGAGTCAAGGAACTTGTTACTGTTGAAAA
TGATATACAGATCTGTAACACAAACCGAGCTGCTTATTTCAGCTTCGATA
GGGAACTTGGTAGATTGATACATCATTGTTCAGGGAAAATGGTTTGTCGA
GACTCACAGAATAAGCGCATGGTTATCAGTAGTAGTTGCCCCAATGCTGA
TATGCAAATGTTTTATCAAACATTTCATGTCGATTTCCGTAAGTGACTTT
CTTGAATAATATAAGTAAATCAAGGGAGGGCAAAAGAAgcctctgattac
taattttTGTGCCCCTTGGCTACTTTACACCCTACTGTTAGCAGTTTTTC
AGCCAAAAGGAGTTATAATACAGGCCCGGTGGAagtggggagactgggga
gacttcaacCTCATGCCCCACGTTTGAGAACAtgagatttctttttcaaa
ttcctAGTGAATTTTATCCCATCTGAGCCTTCAGCCTCACCACTTTAttt
aacggttgttccgccgggtaTGAAATACCCATATTTTGGTCGATCCATCA
CGCTACTGCTCAAACGGAATGTTTCAAACGGAACGTTTATCGGTAAGAGC
TATATATTACCTAACCGGTTTATTTTCTACTTATTTATTTCACGCTTCAA
GAGAACTATTTGTATTACGATACAAGATGCTTCTCGGTCTATACAGGAGA
TTGGAATTTACAGCAGGCAGCCATTTTGACTAAAGATATTTGTGGTTGGG
CAACCTCATTCTTTTTTCGTCATTTACCACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001278XLOC_001278Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002391-exon-sc0000019-1491911889:603594..604375TCONS_00002391-exon-sc0000019-1491911889:603594..604375Clytia hemisphaericaexon
TCONS_00002391-exon-sc0000019-1510915933:603594..604375TCONS_00002391-exon-sc0000019-1510915933:603594..604375Clytia hemisphaericaexon
TCONS_00002391-exon-sc0000019-1575043694:603594..604375TCONS_00002391-exon-sc0000019-1575043694:603594..604375Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:603594..604375 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.247663	0	0.0701042	0	0.250491	0.461863	0.238808	0.52166	0.521752	0.581647	0.125458	0.618533	0.0823565	0	0.140631	0.113189	0.697199	0.666966	0	0	2.69387	1.92716	0.567931	0.451791	0	0	0.424494	0.543638	0.137443	0.21005
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002391 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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