TCONS_00002389 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002389
Unique NameTCONS_00002389
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length431

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002389 ID=TCONS_00002389|Name=TCONS_00002389|organism=Clytia hemisphaerica|type=transcript|length=431bp
AACGTCAAGAATTTAGTGTCTCGCAGGTTCTATTTTCGTACTTTGGCTCG
TCTCGCAAACCTGGTACACCCCCTGCATAACCAGTAGCAAACCCTTGTCA
GACATCCCATTTGGAAAagtttgaccaaaatatcgtcccactGGTAAAAT
TTctcactgagaaattgactttgattttattttcatttagctTTCGTAAG
AAATTTATATTCCCATTGGGGCTGCGAACAGGGATGTCAGCAGATGCGAT
AATACAGTATTATAATATTATAGATAATTTGTACAATTTTTACATACATA
TATAAGAACCTTTATAACTTCAAACGATAGTGTACTTTAATTGGAAGGTC
TAGTAGAGACCATTAGTttttaaaatgataattagTCGACGGAAGGTTAG
ACAAACAATGAACGGTATAATTCGATGTAAT
Run BLAST on NCBI

transcript from alignment at sc0000019:538261..538691

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002389 ID=TCONS_00002389|Name=TCONS_00002389|organism=Clytia hemisphaerica|type=transcript|length=431bp|location=Sequence derived from alignment at sc0000019:538261..538691 (Clytia hemisphaerica)
ATTACATCGAATTATACCGTTCATTGTTTGTCTAACCTTCCGTCGActaa
ttatcattttaaaaACTAATGGTCTCTACTAGACCTTCCAATTAAAGTAC
ACTATCGTTTGAAGTTATAAAGGTTCTTATATATGTATGTAAAAATTGTA
CAAATTATCTATAATATTATAATACTGTATTATCGCATCTGCTGACATCC
CTGTTCGCAGCCCCAATGGGAATATAAATTTCTTACGAAagctaaatgaa
aataaaatcaaagtcaatttctcagtgagAAATTTTACCagtgggacgat
attttggtcaaactTTTCCAAATGGGATGTCTGACAAGGGTTTGCTACTG
GTTATGCAGGGGGTGTACCAGGTTTGCGAGACGAGCCAAAGTACGAAAAT
AGAACCTGCGAGACACTAAATTCTTGACGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001276XLOC_001276Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002389-exon-sc0000019-1491911889:538261..538691TCONS_00002389-exon-sc0000019-1491911889:538261..538691Clytia hemisphaericaexon
TCONS_00002389-exon-sc0000019-1510915933:538261..538691TCONS_00002389-exon-sc0000019-1510915933:538261..538691Clytia hemisphaericaexon
TCONS_00002389-exon-sc0000019-1575043694:538261..538691TCONS_00002389-exon-sc0000019-1575043694:538261..538691Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:538261..538691 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	38.2673	20.5809	10.685	13.6851	0.324937	1.35078	0	0.259414	0	0	0	0	0	0.122964	0	0	1.38637	1.35031	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002389 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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