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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023491 ID=TCONS_00023491|Name=TCONS_00023491|organism=Clytia hemisphaerica|type=transcript|length=2199bp
ttgatatGATCggataaaattattttcatttttgattattttatagAATA
ATTCTAAACAATACTACTAAACCACACAGAAAGGGGTTTCATTGACCTTT
AGTATGAGACATTGAGAAGTCATTATGGCATTTTAGAGGAACTTGAGAAA
TGATATGTTTGGTGTTAGCAGAATTTTTTTCGTGTTATTGCTGATCCCAA
ACTGATATTTTATCAAGGAGACATACTAAGTGGTACTTACTTTGGTTATT
TGGAGAATTTACAAAACGATAGACAATAACGTAAACAACCATCATGGATT
TCTTGAAATTGGATATGAAGACATTATTGAGATCTGGAACAATAATGAAT
GCAAACGAATTGTATATCACACTTGCTGCCATTCAAGGCGAGTTACAAAA
TACAGTTGGCGAGTTGTTTGCTATGTTTTGCCTCGAAAATAAAGATGGCG
GGGAGAATCGACATGCAACACAAGCTTTCAGTACTATCTTGAAGAAATGT
AAAGATTTGAATCAACTCGAAACGCTGGAATACGGTTTCATTAAAAATCG
TATTTACGATACCAATGATGAAGGAGAAATGGTATTACGAGAtgaaatca
atttgaaaattcTGGACACTTTATTTTTGTATGACTCAATGAAAAACTTG
AAAGGTTTTCCAACATTTCAGGAGAAATTACAACACAGACGCAGGCTAAA
ATCTTGTAAACAAGCTTTACATCAACAGTGTTGTTTAGCCTGTAACCAca
aatgtaaaaaatgtgatAAGAAAGAATGTAAGGATGATTCTTGTCATCCA
GgggctaaatgtaatcaacacCCCTGTCGCAATTGTGACGAAACTAAGGA
AATTTGTCTCCATTCTTCAAGTATATGCTGCAAAAAATGTGAGACTTGTT
TTTATTGTGGCTCCAAAATGAAGTTAGAAGTTAGCGAACGGTGTAATAGA
CTACGGCTAACATGTGGACTTGAAACATTGAGAAAATTTCGACAACTTTT
agagaaattgacttttaaaGATTGTGAATTGTTGCTAGATGGTAAACATA
CCTTACCGGGTTTCCAGCTCTGTAGAAGTTTCCGAGAACTTTCTGATTAT
TTGTTGAAAGCTTATAAAGAAGTTTTGAATTATATGTCGATCGCAGAACA
TTTTATCAAACAACAACCTCTTTCTtctaaagatattcaaaagaaAGTTG
ACAGCCTGGCTACAATTTTTAAAACGGAAGATCGTGATTGGCTGTTGTAC
ATGCagcatgatgacgtcattaagaTTTTAGGATTCATTAATGAAGCTAG
AGCCCAACCCTCTGAAGAATATCATTACGTCATcaataaaattgaagaat
tgaaatcagACGAGAAATTTAAGAGACACAGGAGTGAAGTTATGGTCGAA
CGTGAAAATGGGGACTCTACTGGCAGCTTATCAAGAGATGTGAATTTTAA
CTTGGAAAGTGTAACcataaatgaaattgaaaattctaaaagtgaAATCG
AGACAAACGAAAACGAAGTCTTCGAAACAGAGACTTTAAATGAACAGCTG
ATAAATAATGATTCACAACAACACGAGGAAGACGTAGCTGTTGCCAAGGT
AACCGGAGAACATGAAGGCGAGGCTACATCAACTGATGTTACCGATTCAA
CAACTTTAAAACCtgaattaaaagaaaatgagggCACTGATGTCACCTCG
GCAGATTTCCGACCTGAAGAATCAGCAAGAAGCAAATGTGAATCTCCAGT
CGATTATGAGTTGAACAAACAACCAGATTCTAAAACGTCTATTCATTCTA
GAACCGACCCAGAAATGATTGAAGTCATCAACAACTTGCAACAATCAGTA
GACGAGCTGAAGGAAAGTTCAGTGACTTATCAAAAAGANTAACAACTTGC
AACAATCAGTTGACGAGCTGAAGGAAAGTTCAGTGACTTATCAAAAAGAA
CTGGATGAAAAATTACAAACTTTTGAACTTGAACATATTGAAACATCATC
TAACGTTGAGGAAATGAACAATAAAGTGCTGAGTCAGCTTTCCGTTGTCA
TGGAGAAGTTGGTTACCATGGAGGAGCAAAGAAAGGTCGAAGCGGAACGG
CAACAAGCGGAAATtgaagaaatcaagaaaaatcagaaaaagttgtTAGA
GATGCTTGAAAccaaacagaaagaaaaagACCAAACAGCTTTTGCGTCC Run BLAST on NCBI transcript from alignment at sc0000455:80902..86057+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023491 ID=TCONS_00023491|Name=TCONS_00023491|organism=Clytia hemisphaerica|type=transcript|length=5156bp|location=Sequence derived from alignment at sc0000455:80902..86057+ (Clytia hemisphaerica)
ttgatatGATCggataaaattattttcatttttgattattttatagAATA
ATTCTAAACAATACTACTAAACCACACAGAAAGGGGTTTCATTGACCTTT
AGTATGAGACATTGAGAAGTCATTATGGCATTTTAGAGGAACTTGAGAAA
TGATATGTTTGGTGTTAGCAGAATTTTTTTCGTGTTATTGCTGATCCCAA
ACTGATATTTTATCAAGGAGACATACTAAGTGGTACTTACTTTGGTTATT
TGGAGAATTTACAAAACGATAGACAATAACGTAAACAACCATCATGGATT
TCTTGAAATTGGATATGAAGACATTATTGAGGTAGGTGGTGAAAGACAAT
GGAAGAGAATATAGATTGAATATTTAAACTTCTCTTAGAGGATTgttaaa
tacacccctgttttacagccccggtggaactttttacctcagtggggata
agaactaattttcaaatcccactggggatagaaattctattgttccaagg
ctaGAAAAACCCGGTGAGGGAtaggtttggagtgcaatttttaaactttg
tgatgaaatcaaagtcattttcctagtggggctgaaatttcagggtatct
ttttaccggggacaaaatttttgcctaattttccagtggggtatTTAAAT
ATGGCTATGGGGTAGAGGACctatttttaactttcttttggAAACTTTAG
ATAATCTCTTAGTCACTTTACTCTATGAAgaaacccccttctcacagacc
cagtagaaCTTTTTCAACCAGTTGGGTTAGTTGCTTTATACACTGAAAGT
CGATGAGGATTTGAGTTCCGTGGAATAAATAGCATAATAGTTTGCAGCCA
GAATTTCTTTATTACAATGATGGTGAAAGCCTATtaagaatttagcttat
ttccttgtttttcgaaatttggaattcgggcgaaaaagtcgattttgggc
catttcttaaatttaatcggatatttcaatttggctcgggtttatagact
tccaggctatattatgagccttattggaccctttttgattttttgaatcc
tcagatcctaaggtcctaagttttaagtctcatgttaaaaatcagagtta
aaactctacccttccaacctaagttagagcgcttccaaaccgattgtggt
tataagatttcgtgggaatttccctttttttctcaaatattacgaccatg
attgtaaataattttcaaCGGGGACTAAAATGGCTGCAGTATCTTAGCCC
AACCAGGTCTGTAAGAAGGGGTGTATGAAAGTTTTCTCCGAAAAAAAAGC
AATAAACAGCCCAAAAAATTAACCAAATTGGCTTAAATGTTGTCAAAACT
TAAAGATTGACCATTCTTCAATTTCTAGTGGTATGTACTTTCCCGTCTCC
CCCAAGATGAGCACCCTCCTATGAACAGATTTTAAAATTGGTGTTAGATG
TAAAATGACCTGTAGAGGTACTTTACTTTAGTAATTCGAGACATATCTCA
AAGAAAACTCTGATAGTTGTTAGAAGGGTGCTATAAGATGTGAGAGTCCA
CTCgccaataaaaatatttatgcTTTAACACGATATATCTTGTTTGTTTT
AACGTCATTGGTCTTATAATCATAGGAAATAAATAGAACTTGACATTTGA
AATACCTAAATTTGTTTTTCTCGTATGGTCATATACGTCAAAGCAATAtt
agatttttgatattttgaaagcGTAAGCCAAGGTAGGGCAGGTAGAAATT
CACAAATAGAGATTTATATGTTCTTTTGGATGtagagttttgatttttca
attttactttttgtttttgaagtaGATAACACcgccctcttctcacagac
ccagtggtcTGTAGGGGTATAAATAGcgaactgaaactcgatggggatcg
atATTCCCTTAACTTTTATGACCAGGGattcaaattcttttgttttaaag
tcagAAAAATTCAGTATGGATGGTAAAGTGGGGACGAAAATGggggtata
attttccaccgggaacgatattttggccaatttttccagtggggagggtt
ggcagtgggtctgtgagaagagggtgtggTAGAGAGAGAGGCTTAACTTT
TCAATATCCATCCTCTCGATCCATCATAGGGAATAAGGTAGCCATCTCTG
ATACATCCTATCAACCCTTTCTAAAAGATCCCTGTAAAGGGATTGGATTC
GAGTTTGCCAGGATCGTCAAATGTGTGAAGTTATTGAATTTGTGTACTCA
CCCAAATACTGATATTTTGCAGTCATTTGACTCTGGCTTAATTAAACCCA
GTTTTCTTGTGACGCTAGGATTATTGGGTTTATTGAAAACCTTAATGGTG
TAAATAACTCAATCTTTTTAGAATATAGCGTGGAAACTCTTTAACTTAAA
CCACTATAACTCAAATGCCTTCTTATAGAGAACAAGCTTTCTAGTTCCTT
CAATTAACAAAACCTCACTCGATATCTCGagatttttttaactcaaacct
TATTGCGTTCCTCATCTTCGAAATGTGGAGACTCCGCACGCTTAATTTGC
TCTCTGTTACTCGTCCTTGACAGAGTTCACAAATTTGTCAGAGTTAAAAC
CACACTTTTAAAGGCTGATAGATATATTATAGATAGATTCTAGTTACAGA
GGTTCGACCTATGGAGAGCGTCTACCATATTATTGTCCTATAATGTCCTT
TTTTTATAGATCTGGAACAATAATGAATGCAAACGAATTGTATATCACAC
TTGCTGCCATTCAAGGCGAGTTACAAAATACAGTTGGCGAGTTGTTTGCT
ATGTTTTGCCTCGAAAATAAAGATGGCGGGGAGAATCGACATGCAACACA
AGCTTTCAGTACTATCTTGAAGAAATGTAAAGATTTGAATCAACTCGAAA
CGCTGGAATACGGTTTCATTAAAAATCGTATTTACGATACCAATGATGAA
GGAGAAATGGTATTACGAGAtgaaatcaatttgaaaattcTGGACACTTT
ATTTTTGTATGACTCAATGAAAAACTTGAAAGGTTTTCCAACATTTCAGG
AGAAATTACAACACAGACGCAGGCTAAAATCTTGTAAACAAGCTTTACAT
CAACAGTGTTGTTTAGCCTGTAACCAcaaatgtaaaaaatgtgatAAGAA
AGAATGTAAGGATGATTCTTGTCATCCAGgggctaaatgtaatcaacacC
CCTGTCGCAATTGTGACGAAACTAAGGAAATTTGTCTCCATTCTTCAAGT
ATATGCTGCAAAAAATGTGAGACTTGTTTTTATTGTGGCTCCAAAATGAA
GTTAGAAGTTAGCGAACGGTGTAATAGACTACGGCTAACATGTGGACTTG
AAACATTGAGAAAATTTCGACAACTTTTagagaaattgacttttaaaGAT
TGTGAATTGTTGCTAGATGGTAAACATACCTTACCGGGTTTCCAGCTCTG
TAGAAGTTTCCGAGAACTTTCTGATTATTTGTTGAAAGCTTATAAAGAAG
TTTTGAATTATATGTCGATCGCAGAACATTTTATCAAACAACAACCTCTT
TCTtctaaagatattcaaaagaaAGTTGACAGCCTGGCTACAATTTTTAA
AACGGAAGATCGTGATTGGCTGTTGTACATGCagcatgatgacgtcatta
agaTTTTAGGATTCATTAATGAAGCTAGAGCCCAACCCTCTGAAGAATAT
CATTACGTCATcaataaaattgaagaattgaaatcagACGAGAAATTTAA
GAGACACAGGAGTGAAGTTATGGTCGAACGTGAAAATGGGGACTCTACTG
GCAGCTTATCAAGAGATGTGAATTTTAACTTGGAAAGTGTAACcataaat
gaaattgaaaattctaaaagtgaAATCGAGACAAACGAAAACGAAGTCTT
CGAAACAGAGACTTTAAATGAACAGCTGATAAATAATGATTCACAACAAC
ACGAGGAAGACGTAGCTGTTGCCAAGGTAACCGGAGAACATGAAGGCGAG
GCTACATCAACTGATGTTACCGATTCAACAACTTTAAAACCtgaattaaa
agaaaatgagggCACTGATGTCACCTCGGCAGATTTCCGACCTGAAGAAT
CAGCAAGAAGCAAATGTGAATCTCCAGTCGATTATGAGTTGAACAAACAA
CCAGATTCTAAAACGTCTATTCATTCTAGAACCGACCCAGAAATGATTGA
AGTCATCAACAACTTGCAACAATCAGTAGACGAGCTGAAGGAAAGTTCAG
TGACTTATCAAAAAGANTAACAACTTGCAACAATCAGTTGACGAGCTGAA
GGAAAGTTCAGTGACTTATCAAAAAGAACTGGATGAAAAATTACAAACTT
TTGAACTTGAACATATTGAAACATCATCTAACGTTGAGGAAATGAACAAT
AAAGTGCTGAGTCAGCTTTCCGTTGTCATGGAGAAGTTGGTTACCATGGA
GGAGCAAAGAAAGGTCGAAGCGGAACGGCAACAAGCGGAAATtgaagaaa
tcaagaaaaatcagaaaaagttgtTAGAGATGCTTGAAAccaaacagaaa
gaaaaaggTATTTTATCTTCATGTTTCTAAATTTCCTCACTTTTTAGATA
CTTAACTTGCATGATAAAGTATGCTAAAGACTTTTCATCTATTGATGTCC
TTCGCGTTGATCTTACATATGCTCACATACACTTTTTGCAATGAACCCAG
GGTACTGCGTTTCTCGACGTTTGCAAGGTAACAGGTATGTCcgagtcaaa
aatcaaaaatcaatacCATTTAACGGAGAGAAagatttgacatttttgag
accTTTTGAGGAGACTTGAAAAagggtacccttatggctctcACATCACA
TACCCCTAACCTGTACTCCCCTCCCCTGCAATTAACTTCTAAACACAACT
TAAACCAAAACACTCAGATCCTTAGTTTTTGCGTGTTATTGATAATTACT
GTCATGACGAGTCTTTATCCATTCATTGTAcctaaattttgactttcatT
CGACATTCAATTCGAAATCCATACACTCATCATATATTCACACCTTTATC
CCAATTTTATTTATAGCTTCCAAGAAGAAACATAATATTTTCAAGCACAA
GTAAGTATACACTTGAACCAATATTTTTCGTTCTAGACCAAACAGCTTTT
GCGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023491-exon-sc0000455-1491911889:80902..81232 | TCONS_00023491-exon-sc0000455-1491911889:80902..81232 | Clytia hemisphaerica | exon |
| TCONS_00023491-exon-sc0000455-1510915933:80902..81232 | TCONS_00023491-exon-sc0000455-1510915933:80902..81232 | Clytia hemisphaerica | exon |
| TCONS_00023491-exon-sc0000455-1575043694:80902..81232 | TCONS_00023491-exon-sc0000455-1575043694:80902..81232 | Clytia hemisphaerica | exon |
| TCONS_00023491-exon-sc0000455-1491911889:83611..85458 | TCONS_00023491-exon-sc0000455-1491911889:83611..85458 | Clytia hemisphaerica | exon |
| TCONS_00023491-exon-sc0000455-1510915933:83611..85458 | TCONS_00023491-exon-sc0000455-1510915933:83611..85458 | Clytia hemisphaerica | exon |
| TCONS_00023491-exon-sc0000455-1575043694:83611..85458 | TCONS_00023491-exon-sc0000455-1575043694:83611..85458 | Clytia hemisphaerica | exon |
| TCONS_00023491-exon-sc0000455-1491911889:86038..86057 | TCONS_00023491-exon-sc0000455-1491911889:86038..86057 | Clytia hemisphaerica | exon |
| TCONS_00023491-exon-sc0000455-1510915933:86038..86057 | TCONS_00023491-exon-sc0000455-1510915933:86038..86057 | Clytia hemisphaerica | exon |
| TCONS_00023491-exon-sc0000455-1575043694:86038..86057 | TCONS_00023491-exon-sc0000455-1575043694:86038..86057 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000455 | supercontig | sc0000455:80902..86057 + |
Blast
The following BLAST results are available for this feature:
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